mRNA_S-ischiensis_contig8.19609.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19609.1
Unique NamemRNA_S-ischiensis_contig8.19609.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19609.1 vs. uniprot
Match: D8LEY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY9_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 9.740e-26
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 1
Query:   10 LQRLRVYVAATRHLSFALDEGACGLAEEDFVQAKKSGQAVTAQDLHRWLTVARLHAVSLGDTAMTEEHWAHMKAMEEKVAARVR 261
            L RLR+Y+ ATR    +LD+ +  LAEEDFV+A++ GQAVT +D HR LT+ARL A+SLGD AMT  HW+HMK +E +VAARV+
Sbjct:   98 LARLRIYLEATRRTELSLDDKSSALAEEDFVKARQQGQAVTGEDFHRMLTIARLTALSLGDEAMTASHWSHMKDLEARVAARVQ 181          
BLAST of mRNA_S-ischiensis_contig8.19609.1 vs. uniprot
Match: A0A6H5KW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW72_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.450e-24
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 EHSLQRLRVYVAATRHLSFALDEGACGLAEEDFVQAKKSGQAVTAQDLHRWLTVARLHAVSLGDTAMTEEHWAHMKAMEEKVAARVR 261
            E  L RLRVY+ ATR    +LDE +  LAEEDFV+A++ GQA+T +D HR LT+ARL A+SLGD AMT  HW+HMK +E +VAARV+
Sbjct:  586 EALLARLRVYLEATRRTELSLDEKSSALAEEDFVKARQQGQAITGEDFHRMLTIARLTALSLGDEAMTASHWSHMKDLEARVAARVQ 672          
BLAST of mRNA_S-ischiensis_contig8.19609.1 vs. uniprot
Match: A0A1V9ZJ56_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJ56_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.750e-13
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   10 LQRLRVYVAATRHLSFALDEGACGLAEEDFVQAKKSGQAVTAQDLHRWLTVARLHAVSLGDTAMTEEHWAHMKAMEEKVAARV 258
            L+  R+Y+AA RH    L E    LAE+ +V  +K    V A DLHR + VARLHAVS+G   ++E  W H+ AM+E+V AR+
Sbjct:  418 LECFRIYLAAYRHAVADLGEAGASLAEQWYVAKRKEDATVGADDLHRLVRVARLHAVSVGHETVSEADWNHVVAMQEQVKARM 500          
BLAST of mRNA_S-ischiensis_contig8.19609.1 vs. uniprot
Match: A0A5J4XJ68_9CHLO (E2F target 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XJ68_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 1.470e-12
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 EHSLQRLRVYVAATRHLSFALDEGACGLAEEDFVQAKKSGQAVTAQDLHRWLTVARLHAVSLGDTAMTEEHWAHMKAMEEKVAARVRC 264
            E SL  +R Y+   +HL F + +      E+DF+ A++  Q+VTA D H+ LT+ARL +VS  +T MT+  W  MKAME    +R++ 
Sbjct:  444 EESLPAIRAYLHQVQHLDFDMGKANSAWLEQDFIDARRQDQSVTASDFHKQLTLARLISVSRAETQMTKVRWHQMKAMEHARLSRLKA 531          
BLAST of mRNA_S-ischiensis_contig8.19609.1 vs. uniprot
Match: A0A5D6YA16_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YA16_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.460e-10
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 EHSLQRLRVYVAATRHLSFALDEGACGLAEEDFVQAKKSGQAVTAQDLHRWLTVARLHAVSLGDTAMTEEHWAHMKAMEEKVAARVRC 264
            E  L   RVY    R L  A+      +AE+ +V  +++ Q V+ +DLHRWL +ARL A+S GD ++T+  W HM A+E +   R++ 
Sbjct:  519 EPLLDAFRVYFGVLRSLEIAIGNEQAEVAEKHYVACRQAKQEVSLEDLHRWLRLARLVALSRGDDSVTKAAWDHMLALEAQRLERLQA 606          
BLAST of mRNA_S-ischiensis_contig8.19609.1 vs. uniprot
Match: A0A6P4YWC0_BRABE (Mini-chromosome maintenance complex-binding protein n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YWC0_BRABE)

HSP 1 Score: 65.1 bits (157), Expect = 5.490e-10
Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   10 LQRLRVYVAATRHLSFALDEGACGLAEEDFVQAKKSG-QAVTAQDLHRWLTVARLHAVSLGDTAMTEEHWAHMKAMEEKVAARVRCQQHPE 279
            L ++R Y+  T  + + L EG   + EEDFV+ +    + +TA+DLH  L VARL A+S+G T +++E W   K +E +   RV+ Q  P+
Sbjct:  543 LAKVRSYLTVTELMEYTLPEGMQKVIEEDFVKMRSDDPKNMTAEDLHSLLVVARLLALSVGQTTLSQEVWDRAKQLETERKTRVKAQPQPQ 633          
BLAST of mRNA_S-ischiensis_contig8.19609.1 vs. uniprot
Match: UPI001E676B4E (mini-chromosome maintenance complex-binding protein-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E676B4E)

HSP 1 Score: 62.8 bits (151), Expect = 3.550e-9
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   10 LQRLRVYVAATRHLSFALDEGACGLAEEDFVQAKKSGQAVTAQDLHRWLTVARLHAVSLGDTAMTEEHWAHMK--AMEEKVAARVRCQ 267
            LQ LR Y+   R L + L E    + ++DFV ++K    +TA DLH  L +ARL AVS G+T++T + W  +K  A E+K+    + Q
Sbjct:  548 LQTLRSYLTTARLLDYTLSEEMQKMVQDDFVDSRKRDNGITASDLHSLLILARLVAVSCGETSLTPDIWKSVKILANEQKLRLSAKLQ 635          
BLAST of mRNA_S-ischiensis_contig8.19609.1 vs. uniprot
Match: C3YJ57_BRAFL (Mini-chromosome maintenance complex-binding protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YJ57_BRAFL)

HSP 1 Score: 62.4 bits (150), Expect = 4.650e-9
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   10 LQRLRVYVAATRHLSFALDEGACGLAEEDFVQAKKSG-QAVTAQDLHRWLTVARLHAVSLGDTAMTEEHWAHMKAMEEKVAARVRCQ 267
            L ++R Y+  T  + + L E    + EEDFVQ + +  + +TA+DLH  L VARL A+S+G T +++E W   K +E +   RV+ Q
Sbjct:  339 LAKVRSYLTVTELMEYTLPEDIQKVIEEDFVQMRSADPKNMTAEDLHSLLVVARLLALSIGQTTLSQEVWGRAKQLETERKTRVKAQ 425          
BLAST of mRNA_S-ischiensis_contig8.19609.1 vs. uniprot
Match: K3WBK2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBK2_GLOUD)

HSP 1 Score: 62.4 bits (150), Expect = 4.840e-9
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   10 LQRLRVYVAATRHLSFALDEGACGLAEEDFVQAKKSGQAVTAQDLHRWLTVARLHAVSLGDTAMTEEHWAHMKAMEEKVAARV 258
            L+  RVY+   R  S A+      +AE+ +V  +++ Q V+ +DLHRWL +ARL A+S G+  ++   W HM A+E K  +R 
Sbjct:  553 LESFRVYLGVLRTWSVAIGNEQAEIAEKHYVACRQAHQEVSLEDLHRWLRLARLVALSQGEGVVSRTAWDHMLALERKRQSRA 635          
BLAST of mRNA_S-ischiensis_contig8.19609.1 vs. uniprot
Match: A0A2K1IR71_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IR71_PHYPA)

HSP 1 Score: 61.2 bits (147), Expect = 1.230e-8
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 1
Query:   22 RVYVAATRHLSFALDEGACGLAEEDFVQAKKSGQAVTAQDLHRWLTVARLHAVSLGDTAMTEEHWAHMKAMEEKVAARVRC 264
            R Y+   R +  +LDE    + E D V A++  + +     HRWLT+ARL AVS  +  +  E W  ++ +E + AAR+RC
Sbjct:  525 RRYIMKAREMDHSLDESTQKIVENDLVAARQEDRTLAPDVFHRWLTMARLMAVSYLEPTLKLERWRKVRDLEHQCAARLRC 605          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEY9_ECTSI9.740e-2659.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW72_9PHAE1.450e-2459.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9ZJ56_9STRA7.750e-1345.78Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A5J4XJ68_9CHLO1.470e-1239.77E2F target 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608... [more]
A0A5D6YA16_9STRA5.460e-1037.50Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6P4YWC0_BRABE5.490e-1037.36Mini-chromosome maintenance complex-binding protei... [more]
UPI001E676B4E3.550e-938.64mini-chromosome maintenance complex-binding protei... [more]
C3YJ57_BRAFL4.650e-937.93Mini-chromosome maintenance complex-binding protei... [more]
K3WBK2_GLOUD4.840e-937.35Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2K1IR71_PHYPA1.230e-835.80Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2529147..2530447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog2880.D8LEY9
Preferred nameMCMBP
KEGG koko:K03549,ko:K06997
KEGG TC2.A.72
GOsGO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0016020,GO:0016043,GO:0022402,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0098813,GO:1901360,GO:1901576,GO:1902969,GO:1903047
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsKOG2545@1,KOG2545@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size334
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817292.0460188-CDS-S-ischiensis_contig8:2529148..25293461622817292.0460188-CDS-S-ischiensis_contig8:2529148..2529346Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2529149..2529346 -
1695741001.2845469-CDS-S-ischiensis_contig8:2529148..25293461695741001.2845469-CDS-S-ischiensis_contig8:2529148..2529346Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2529149..2529346 -
1622817292.0571-CDS-S-ischiensis_contig8:2530315..25304471622817292.0571-CDS-S-ischiensis_contig8:2530315..2530447Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2530316..2530447 -
1695741001.2969787-CDS-S-ischiensis_contig8:2530315..25304471695741001.2969787-CDS-S-ischiensis_contig8:2530315..2530447Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2530316..2530447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19609.1prot_S-ischiensis_contig8.19609.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2529149..2530447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19609.1

>prot_S-ischiensis_contig8.19609.1 ID=prot_S-ischiensis_contig8.19609.1|Name=mRNA_S-ischiensis_contig8.19609.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp
EHSLQRLRVYVAATRHLSFALDEGACGLAEEDFVQAKKSGQAVTAQDLHR
WLTVARLHAVSLGDTAMTEEHWAHMKAMEEKVAARVRCQQHPEQPAGPGG
STEGGGGIAA
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mRNA from alignment at S-ischiensis_contig8:2529147..2530447-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19609.1 ID=mRNA_S-ischiensis_contig8.19609.1|Name=mRNA_S-ischiensis_contig8.19609.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1301bp|location=Sequence derived from alignment at S-ischiensis_contig8:2529147..2530447- (Schizocladia ischiensis KU_0333)
GAGCACTCCCTCCAGCGGTTGCGCGTGTACGTGGCAGCCACGCGCCACCT GAGCTTTGCATTGGATGAGGGGGCGTGCGGGCTGGCTGAGGAGGACTTTG TGCAGGCGAAGAAGAGCGGCCAGGCGGTCACGGTGAGTGGGGGGGCGGGG AGGGAGAAGGGAGGGAGGGAGTAGGTGAGTGGGGGAGCGGGGGAGTGAGT GAGAGCATGAGTGATGGCATGGGGGAATGAGTGAGTGAGTGAGTGTGAGT AGGTGGGTGGGTGGGTTTTTTGATGGAATGGTGGGCGGGCGGGAGGGAGG GTGGGCGAGTGGGTGCGGTCGCATACACAGATGCTGAAGCAGGTCAGTGC CGTAGTATTGTCGGACCGTGACGTGGCCCCGCGTAGAACAGCGAGAGCAT CGCTGCATCGACTGTAAGTACTTCAAAGTACTTTTCACCAGCAAGAGAAT GGCCGCACATAGCGTACAATAGCCAGAGAATGATTGAGGGAGGGGGGGAT GGAGGGAGGGGTGATGCCGAGCTGGTGTCGCAGACCGCCGCCTCTGCCCG CCCCCCGTTGTGCTTCCCCTTCCCCTTTCCCCCCGCTTCCCCGGCGCCTC TCCATGCTCTCTCTCTCTCCCCCCCTCCTCTCCTCAGCCCCTGCCCCCCC ACACCAGCGCACAGCACTCACTGTAACGGCTACAATATGGCGGTGGCCAT TAGAAGCAACGACCAACCGTTGACCGAAAGCCATCACCCCAACTGTCACG GCACGCTTGTAGGCGACTGTCCGCCGATTTGGGCCACTAAGTATCCGGTG ACAGTACTACAAGTAGTGCTAGGCTTAAGGATACCGTGCAGCATCTTTCC TGCGACTGTCTGCCCCTCCCTTCTGCCCTCACACTCCCTCCCGCCTCTCT CGCTCCACCCCTTGACCCATTCCCTGCACAAGCCCCCTCACACACCCCGC TAGCTACTGTAGGTGCAAGACTCGCGCGGCTGGCTCACCCACCGCACCCC TCCCCCACTTGCTACTAATATGAAAACAGTGAATCTCGCACACGTGCAAT TGTACCTCGTTACAATTTATATGAATCACCCCCCCCCCACTGCCCACACA GGCACAAGACTTGCACCGCTGGCTCACAGTTGCTCGCCTCCACGCCGTCT CCCTGGGAGACACCGCCATGACGGAGGAGCACTGGGCCCACATGAAGGCG ATGGAGGAAAAGGTGGCGGCGCGGGTTCGCTGCCAGCAGCACCCGGAGCA GCCTGCTGGCCCGGGTGGCTCCACGGAGGGGGGGGGGGGCATAGCTGCTG C
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2529147..2530447-

>mRNA_S-ischiensis_contig8.19609.1 ID=mRNA_S-ischiensis_contig8.19609.1|Name=mRNA_S-ischiensis_contig8.19609.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig8:2529147..2530447- (Schizocladia ischiensis KU_0333)
GAGCACTCCCTCCAGCGGTTGCGCGTGTACGTGGCAGCCACGCGCCACCT
GAGCTTTGCATTGGATGAGGGGGCGTGCGGGCTGGCTGAGGAGGACTTTG
TGCAGGCGAAGAAGAGCGGCCAGGCGGTCACGGAGCACTCCCTCCAGCGG
TTGCGCGTGTACGTGGCAGCCACGCGCCACCTGAGCTTTGCATTGGATGA
GGGGGCGTGCGGGCTGGCTGAGGAGGACTTTGTGCAGGCGAAGAAGAGCG
GCCAGGCGGTCACGGCACAAGACTTGCACCGCTGGCTCACAGTTGCTCGC
CTCCACGCCGTCTCCCTGGGAGACACCGCCATGACGGAGGAGCACTGGGC
CCACATGAAGGCGATGGAGGAAAAGGTGGCGGCGCGGGTTCGCTGCCAGC
AGCACCCGGAGCAGCCTGCTGGCCCGGGTGGCTCCACGGAGGGGGGGGGG
GGCATAGCTGCTGCACAAGACTTGCACCGCTGGCTCACAGTTGCTCGCCT
CCACGCCGTCTCCCTGGGAGACACCGCCATGACGGAGGAGCACTGGGCCC
ACATGAAGGCGATGGAGGAAAAGGTGGCGGCGCGGGTTCGCTGCCAGCAG
CACCCGGAGCAGCCTGCTGGCCCGGGTGGCTCCACGGAGGGGGGGGGGGG
CATAGCTGCT
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