prot_S-ischiensis_contig8.19420.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19420.1
Unique Nameprot_S-ischiensis_contig8.19420.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length432
Homology
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: D8LNH6_ECTSI (RNA polymerase sigma factor SigD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNH6_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 5.430e-47
Identity = 128/338 (37.87%), Postives = 179/338 (52.96%), Query Frame = 0
Query:   97 ELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLE-LSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQN-LICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPR-VMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAE-ARAVARSSMAKLRKLCFSFAPEEREDLMGYLLV 430
            E  LG+K+Q  M+L +LK  L    G     +E  AE  +E +  L+  L EG+ AK  +V+ NL LV  IV      K   G  + G F++ DL Q+AT+GLIRAVEKFDPE+G+ FATY  WW+RK L E +Q  N ++ +P   A R++K+ RV  EL+  LGR PT+ E+A    +  +QV  C    S + +  LD YMG G G            A           D++      P   +  EK+ + S+R +L++   ++LD  ER CL LRYGL DG  +S+ + A  M     +  R +   +MAKLR  C    PEER+ LM YL V
Sbjct:   55 EYELGTKIQRMMKLLKLKDVLQPAAGEDEVSSEVWAEGAMESVESLRQALDEGEKAKQELVLDNLNLVDIIV------KNYVGTFAYGRFTEKDLTQDATVGLIRAVEKFDPEKGFFFATYGRWWVRKYLHEGVQNHNRMVRIPNSAAYRIAKVKRVRDELEGELGRAPTKPEIALETDLTVQQVEACLEQDSFR-IERLDGYMGHGFG------MADTVFASHFGEGFLYGSDMLTHPGETPAPTVEGEKVIQSSLRGDLSSAFVRLLDATERECLVLRYGLHDGVTNSIEQTAAIMDFCDPDDVRIITTQAMAKLRDGCL---PEERKKLMSYLSV 376          
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: A0A8J7E1T7_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Nodosilinea sp. LEGE 07088 TaxID=2777968 RepID=A0A8J7E1T7_9CYAN)

HSP 1 Score: 163 bits (413), Expect = 3.160e-43
Identity = 123/342 (35.96%), Postives = 180/342 (52.63%), Query Frame = 0
Query:   91 RLSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQNL-ICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDR---RERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRKLCFSFAPEEREDLMGYL 428
            RLS ++E+SLG +VQ  M+L +   SLT+ LGR PT AEWA EA L  + L  ++ +G+AA+ RMV  NL LV  I   +T  KR             DLVQE TLGL R VEKFDP +GYRF+TYA WWIR+ +  ++ ++   I +P+ + ++++KI R  ++L + LGR  T EEVA H  +   QV + ++  S QPM SL+A +G  G                 +       D  GQ    P    ++   K+ +        FK+LDR   ++R  L LR+GL  G   SL++V + +  ++   R + R ++ KL           R+DL  YL
Sbjct:   24 RLSREEEISLGKQVQRFMQLTQQADSLTKALGREPTLAEWATEAKLSATELNQQIADGEAARYRMVEANLRLVVSIAKKYT--KRN--------LDLMDLVQEGTLGLQRGVEKFDPTKGYRFSTYAYWWIRQAVTRAIAEKGRSIRLPIHIFEKLTKIKRAQRQLAQDLGRTATLEEVANHLDMPLAQVRK-FLAQSRQPM-SLNALVGEKGD----------------TELADMLEDEQGQ---SPEEYAAQSSLKQDI--------FKVLDRLTPQQREVLVLRFGLGSGEGLSLSKVGQQLNVSRERVRQIERDAIKKLHYA--------RQDLRAYL 318          
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: Q8S9C9_CYAPA (RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa TaxID=2762 RepID=Q8S9C9_CYAPA)

HSP 1 Score: 165 bits (417), Expect = 1.040e-42
Identity = 110/328 (33.54%), Postives = 168/328 (51.22%), Query Frame = 0
Query:   92 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGL-ELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQNL-ICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRKLCFSFA 417
            L  +DE+ L  +++   +L ++K  +  + G  PT  EWA  A L +   L+  ++ G  A+DR+V  N  L W +  A    K+R      G  S  DL+QE  +GLIRAVEKFDP  GYRF TYATWWIR+ +  S+Q  +  I +P    +++++I R T  L R+LGR PTE E+AEH G+ P ++ +   + +     SLD                     VP++    +    +G          +++  +E +R  +A TL K L  RE   LR+R+GLDDG   +L +V E +  T+   R +   ++ KLR+  FS A
Sbjct:  127 LKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDAEELRHMVRVGTLARDRLVRAN--LRWVVAVAKKYHKQR------GTMSMQDLIQEGNIGLIRAVEKFDPRMGYRFTTYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQPTEAEIAEHVGLDPSRMRKFVESAAAVATVSLD---------------------VPINES-DNQSATIGDFIRSENEGPADRAERELMRESVARTLAKALSEREYMVLRMRFGLDDGEPKTLNQVGETLGVTRERVRQIEMKALRKLRRPGFSSA 424          
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: K9Y6K9_HALP7 (RNA polymerase, sigma 70 subunit, RpoD subfamily n=5 Tax=Cyanobacteria TaxID=1117 RepID=K9Y6K9_HALP7)

HSP 1 Score: 160 bits (406), Expect = 4.020e-42
Identity = 112/321 (34.89%), Postives = 176/321 (54.83%), Query Frame = 0
Query:   92 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQ-NLICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRK 411
            L+H+ E+ LG +VQ  M+L E K  L E LGR  T  EW  +AG+    L+  ++EG+ AK +M+  NL LV  I   +   KR             DL+QE TLGL R VEKFDP RGY+F+TYA WWIR+ +  ++ QQ   I +P+ + ++++KI +V +EL + LGR+ T  E+AE  G+ P Q+ E +++ + QP+ SLD  +G                   LS       +++   E  P       L +ES+R ++ +++   L  ++R  L LR+GL+DG   SLA+V + +  ++   R +   ++AKLR+
Sbjct:   33 LTHEQEIILGKQVQKMMKLIEQKEELEEELGREATDEEWTQKAGISQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQ--KRN--------MEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELAQKLGRNATPTEIAEELGLEPSQIRE-YLSIARQPI-SLDVRVG-------------DNQDTELS-------ELLEDDENSPETY----LTQESMRQDI-DSMLSELTPQQREVLSLRFGLEDGNELSLAKVGKKLNLSRERVRQLEHQALAKLRR 316          
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: A0A1C0VBJ4_9CYAN (RNA polymerase subunit sigma n=2 Tax=unclassified Limnothrix TaxID=2632864 RepID=A0A1C0VBJ4_9CYAN)

HSP 1 Score: 159 bits (403), Expect = 8.570e-42
Identity = 109/321 (33.96%), Postives = 167/321 (52.02%), Query Frame = 0
Query:   92 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQN-LICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRK 411
            L+H+ E+ LG +VQ    L+E K  LT RLG  P  AEWAA  GL L  LKA ++EGD AK +MV  NL LV  +   +   KR             DL+QE T+G+ R VEKFDP +GYRF+TYA WWIR+ +  ++ ++   I +P+ + ++++KI +  + L + LGR  T  E+ +  G++PKQ+ + ++  + QP+ SLD  +G                   L    PS  +   Q  LR  +                 T+   L  ++R  L LR+GL DG   +LA++ + +Q ++   R + R ++ KLRK
Sbjct:   24 LTHEQEIVLGKQVQRLNVLQEEKDKLTLRLGYEPGLAEWAAAIGLSLDELKAAIREGDRAKRKMVEANLRLVVSVAKKYI--KRN--------VDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRTLSQQLGRSATIAELGDEIGLSPKQIRD-YLERARQPL-SLDLRVG---------DNQDTELGELLEDEGPSPEEFATQSSLRGDI----------------ETIMADLTPQQREVLSLRFGLSDGQALTLAKIGDRLQISRERVRQIEREALTKLRK 307          
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: UPI0019DF3EF8 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019DF3EF8)

HSP 1 Score: 158 bits (400), Expect = 2.280e-41
Identity = 112/338 (33.14%), Postives = 172/338 (50.89%), Query Frame = 0
Query:   92 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQN-LICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRKLCFSFAPEEREDLMGYL 428
            L+H++E+ LG  VQ    L   + +L E+LGRSPT AEWA  +GL    L A ++EG+ AK +MV  NL LV  +   +   KR             DL+QE T+G+ R VEKFDP +GYRF+TYA WWIR+ +  ++ +++  I +P+ + ++++KI R  ++L +  GR  T  E+A    ++PK V E ++  S QP+ SLD  +G                +  L    PS  +   Q  LR  +                + L   L  ++R  L LR+GLDDG   +LA++ E +  ++   R + R ++ KLRK         R D+  YL
Sbjct:   23 LTHEEEIVLGKCVQRLTELERHREALEEKLGRSPTQAEWAEASGLSTQALAAAIREGEQAKRKMVEANLRLVVSVAKKYI--KRN--------VDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKRAQRQLSQKHGRTATVSELAAELELSPKLVRE-YLEKSRQPL-SLDLRVG---------DNQDTELSDLLEDDGPSPEEFATQAALRRDL----------------DKLMVDLTPQQRQVLNLRFGLDDGQTMTLAKIGEMLSISRERVRQIEREALTKLRK--------HRSDMREYL 315          
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: A0A1U7J1H4_9CYAN (RNA polymerase subunit sigma n=21 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A1U7J1H4_9CYAN)

HSP 1 Score: 158 bits (400), Expect = 2.920e-41
Identity = 107/321 (33.33%), Postives = 167/321 (52.02%), Query Frame = 0
Query:   92 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQ-NLICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRK 411
            L+H++E+  G +VQA M L E K  LTE LG  P+  EWA  AGL+ + L   +++G+ AK +M+  NL LV  I   +   KR             DL+QE TLGL R VEKFDP +GY+F+TYA WWIR+ +  ++ QQ   I +P+ + ++++KI RV +EL + LGR P   E+ E   + PKQ+ E  V  + QP+ SLD  +G                            +++    + P    +++  K+ +R      L   L  +++  + LRYGL+DG   SLA+V   M  ++   R + + ++  LR+
Sbjct:   33 LTHEEEIIFGKQVQAYMALLEQKEGLTETLGHEPSSNEWAEAAGLDEAQLNHTVRQGERAKRKMIEANLRLVVAIAKKYQ--KRN--------LEFLDLIQEGTLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELSQQLGRSPNANEIGEALELEPKQIREFLVL-ARQPI-SLDVRIG--------------------DNQDTELQELLEDDGISPETFTAQESLKQDIR-----NLLSELTPQQKEVITLRYGLEDGNELSLAKVGNRMNISRERVRQLEQQALKHLRR 316          
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: UPI001A0CF0F9 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Gloeomargaritaceae cyanobacterium C42_A2020_066 TaxID=2747801 RepID=UPI001A0CF0F9)

HSP 1 Score: 158 bits (399), Expect = 3.270e-41
Identity = 107/338 (31.66%), Postives = 176/338 (52.07%), Query Frame = 0
Query:   92 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQN-LICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRKLCFSFAPEEREDLMGYL 428
            L+H++E+ LG +VQ+  +L++ + SL E+LGR P+  EWAA AG+ L  L+  +Q G+ AK +M+  NL LV  +   +   KR             DL+QE T+G+ R VEKFDP +GYRF+TYA WWIR+ +  ++ +++  I +P+ + ++++KI +  ++L ++LGR  T  E+A    + P+QV + ++  + QP+ SLD  +G                   L     +  D   Q  LR  + G                +   L  ++R  L LRYGL+DG   +L+ + E +  ++   R + R ++ KLRK         R D+ GYL
Sbjct:   24 LTHEEEIRLGRQVQSLSQLQDQRTSLAEQLGREPSQEEWAAAAGISLWDLQRIVQAGERAKRKMIEANLRLVVAVAKKYV--KRN--------VDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQSLGRAATVGELAAELDLTPRQVRD-YLERARQPL-SLDVRVG---------DNQDTELGELLEDQGLTPEDFTDQTALRHEIQG----------------VMAELTPQQRRVLSLRYGLEDGQPLTLSRIGELLNISRERVRQIEREALTKLRK--------RRGDMRGYL 316          
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: UPI0019A4C0BC (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbyaceae cyanobacterium LF-bin-369 TaxID=2804781 RepID=UPI0019A4C0BC)

HSP 1 Score: 158 bits (399), Expect = 3.610e-41
Identity = 107/338 (31.66%), Postives = 177/338 (52.37%), Query Frame = 0
Query:   92 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQNL-ICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRKLCFSFAPEEREDLMGYL 428
            LSH+ E+  G +V A + L++L+  LT +L R PT  EWA+ A L+ + L  R+Q+G+ AK RM+  NL LV  +         ++ Q  D      DL+QE T+G+ R VEKFDP +GYRF+TYA WWIR+ +  ++ ++   I +P+ + ++++KI +  ++L + LGR  T  E+AEH  ++P+QV +       +   SLD  +G G                            +G +   P     +     ++R +L N L + L +++R  L LR+GL DG   +LA++ + ++ ++   R V R ++ KLRK         +  +MGYL
Sbjct:   28 LSHEQEIIYGKQVNALVALQDLRSQLTVQLDRLPTALEWASAADLDAATLNDRIQQGERAKRRMIEANLRLVVSVA--------KKYQKRD--VDLMDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKGRSIRLPIHIVEKLNKIKKAQRDLTQELGRVATTVELAEHLDLSPEQVRD--YLQYARSTISLDVRVGEG------------------------QETHLGDLLEDPGASPEDYTSARALRHDL-NKLMEDLTQQQREVLNLRFGLSDGQSLTLAKIGDRLKISRERVRQVEREALIKLRK--------RKIGVMGYL 320          
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: A0A1Z3HSX7_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Halomicronema hongdechloris C2206 TaxID=1641165 RepID=A0A1Z3HSX7_9CYAN)

HSP 1 Score: 158 bits (399), Expect = 4.080e-41
Identity = 110/338 (32.54%), Postives = 176/338 (52.07%), Query Frame = 0
Query:   92 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQ-NLICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRKLCFSFAPEEREDLMGYL 428
            L+H+ E+ LG +VQ  M L + K +L +RL R PTPAEWA  A +  + LK +L++G  AK +M+  NL LV  I   +   KR             DL+QE TLGL R VEKFDP +GY+F+TYA WWIR+ +  ++ QQ   I +P+ + ++++KI R+ +EL ++LGR P   E+A+   + PKQV + ++  + QP+ SLD  +G                            +++    + P     ++  K+ +R  LA      L  +++  + LRYGL+DG   SLA+V   M  ++   R + + ++  LR+         + D+  YL
Sbjct:   33 LTHEQEIVLGKQVQQMMTLLDTKEALEDRLDREPTPAEWAEAADIPEAELKTKLRQGQRAKRKMIEANLRLVVAIAKKYQ--KRN--------LEFLDLIQEGTLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRIQRELSQSLGRSPNAIEIADALELEPKQVRD-YLLMARQPI-SLDVRIG--------------------DNQDTELQELLEDDSVSPENYTVQESLKQDIRDLLAE-----LTPQQKEVITLRYGLEDGNELSLAKVGHRMNISRERVRQLEQQALKHLRR--------RKADVRSYL 325          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNH6_ECTSI5.430e-4737.87RNA polymerase sigma factor SigD n=2 Tax=Ectocarpu... [more]
A0A8J7E1T7_9CYAN3.160e-4335.96RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
Q8S9C9_CYAPA1.040e-4233.54RNA polymerase sigma factor n=1 Tax=Cyanophora par... [more]
K9Y6K9_HALP74.020e-4234.89RNA polymerase, sigma 70 subunit, RpoD subfamily n... [more]
A0A1C0VBJ4_9CYAN8.570e-4233.96RNA polymerase subunit sigma n=2 Tax=unclassified ... [more]
UPI0019DF3EF82.280e-4133.14RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A1U7J1H4_9CYAN2.920e-4133.33RNA polymerase subunit sigma n=21 Tax=Cyanobacteri... [more]
UPI001A0CF0F93.270e-4131.66RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
UPI0019A4C0BC3.610e-4131.66RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A1Z3HSX7_9CYAN4.080e-4132.54RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 383..398
score: 20.32
coord: 362..374
score: 42.83
coord: 398..409
score: 25.38
coord: 213..221
score: 81.29
coord: 189..202
score: 61.06
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 186..225
e-value: 7.3E-13
score: 48.1
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 361..411
e-value: 2.2E-6
score: 27.1
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 152..411
e-value: 2.6E-17
score: 60.9
NoneNo IPR availableGENE3D1.20.120.1810coord: 53..233
e-value: 4.8E-28
score: 100.6
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGBcoord: 88..417
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 88..417
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..431
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..16
score: 5.0
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 237..310
e-value: 2.5E-12
score: 49.1
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 353..423
e-value: 3.4E-10
score: 41.5
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 245..282
e-value: 3.2E-9
score: 36.8
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 237..304
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 344..413
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 89..230

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1338282..1344773 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19420.1mRNA_S-ischiensis_contig8.19420.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 1338255..1344937 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19420.1 ID=prot_S-ischiensis_contig8.19420.1|Name=mRNA_S-ischiensis_contig8.19420.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=432bp
MRHFVQWSCAFFALSCRSGPVEVAGFMPMSLAGHSSCARRPQRGLPRQRS
WSASMAASSAAAAGTAERLRKGGFQVTTWSKKPGGNKSSRRLSHQDELSL
GSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDA
AKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIR
AVEKFDPERGYRFATYATWWIRKLLWESMQQQNLICVPVKVAQRVSKINR
VTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGR
GGGGGRGAEMGSGKEAVPLSEAVPSAMDVVGQVELRPRVMGSEKLWKESV
RWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARA
VARSSMAKLRKLCFSFAPEEREDLMGYLLVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR007627RNA_pol_sigma70_r2
IPR007630RNA_pol_sigma70_r4
IPR014284RNA_pol_sigma-70_dom
IPR036388WH-like_DNA-bd_sf
IPR007624RNA_pol_sigma70_r3
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2