mRNA_S-ischiensis_contig8.19420.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19420.1
Unique NamemRNA_S-ischiensis_contig8.19420.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: D8LNH6_ECTSI (RNA polymerase sigma factor SigD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNH6_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 3.190e-46
Identity = 128/338 (37.87%), Postives = 179/338 (52.96%), Query Frame = 3 
Query:  453 ELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLE-LSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQN-LICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPR-VMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAE-ARAVARSSMAKLRKLCFSFAPEEREDLMGYLLV 1454
            E  LG+K+Q  M+L +LK  L    G     +E  AE  +E +  L+  L EG+ AK  +V+ NL LV  IV      K   G  + G F++ DL Q+AT+GLIRAVEKFDPE+G+ FATY  WW+RK L E +Q  N ++ +P   A R++K+ RV  EL+  LGR PT+ E+A    +  +QV  C    S + +  LD YMG G G            A           D++      P   +  EK+ + S+R +L++   ++LD  ER CL LRYGL DG  +S+ + A  M     +  R +   +MAKLR  C    PEER+ LM YL V
Sbjct:   55 EYELGTKIQRMMKLLKLKDVLQPAAGEDEVSSEVWAEGAMESVESLRQALDEGEKAKQELVLDNLNLVDIIV------KNYVGTFAYGRFTEKDLTQDATVGLIRAVEKFDPEKGFFFATYGRWWVRKYLHEGVQNHNRMVRIPNSAAYRIAKVKRVRDELEGELGRAPTKPEIALETDLTVQQVEACLEQDSFR-IERLDGYMGHGFG------MADTVFASHFGEGFLYGSDMLTHPGETPAPTVEGEKVIQSSLRGDLSSAFVRLLDATERECLVLRYGLHDGVTNSIEQTAAIMDFCDPDDVRIITTQAMAKLRDGCL---PEERKKLMSYLSV 376
[Close]
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: A0A8J7E1T7_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Nodosilinea sp. LEGE 07088 TaxID=2777968 RepID=A0A8J7E1T7_9CYAN)

HSP 1 Score: 163 bits (413), Expect = 1.150e-42
Identity = 123/342 (35.96%), Postives = 180/342 (52.63%), Query Frame = 3 
Query:  435 RLSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQNL-ICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDR---RERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRKLCFSFAPEEREDLMGYL 1448
            RLS ++E+SLG +VQ  M+L +   SLT+ LGR PT AEWA EA L  + L  ++ +G+AA+ RMV  NL LV  I   +T  KR             DLVQE TLGL R VEKFDP +GYRF+TYA WWIR+ +  ++ ++   I +P+ + ++++KI R  ++L + LGR  T EEVA H  +   QV + ++  S QPM SL+A +G  G                 +       D  GQ    P    ++   K+ +        FK+LDR   ++R  L LR+GL  G   SL++V + +  ++   R + R ++ KL           R+DL  YL
Sbjct:   24 RLSREEEISLGKQVQRFMQLTQQADSLTKALGREPTLAEWATEAKLSATELNQQIADGEAARYRMVEANLRLVVSIAKKYT--KRN--------LDLMDLVQEGTLGLQRGVEKFDPTKGYRFSTYAYWWIRQAVTRAIAEKGRSIRLPIHIFEKLTKIKRAQRQLAQDLGRTATLEEVANHLDMPLAQVRK-FLAQSRQPM-SLNALVGEKGD----------------TELADMLEDEQGQ---SPEEYAAQSSLKQDI--------FKVLDRLTPQQREVLVLRFGLGSGEGLSLSKVGQQLNVSRERVRQIERDAIKKLHYA--------RQDLRAYL 318
[Close]
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: Q8S9C9_CYAPA (RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa TaxID=2762 RepID=Q8S9C9_CYAPA)

HSP 1 Score: 165 bits (417), Expect = 3.830e-42
Identity = 110/328 (33.54%), Postives = 168/328 (51.22%), Query Frame = 3 
Query:  438 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGL-ELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQNL-ICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRKLCFSFA 1415
            L  +DE+ L  +++   +L ++K  +  + G  PT  EWA  A L +   L+  ++ G  A+DR+V  N  L W +  A    K+R      G  S  DL+QE  +GLIRAVEKFDP  GYRF TYATWWIR+ +  S+Q  +  I +P    +++++I R T  L R+LGR PTE E+AEH G+ P ++ +   + +     SLD                     VP++    +    +G          +++  +E +R  +A TL K L  RE   LR+R+GLDDG   +L +V E +  T+   R +   ++ KLR+  FS A
Sbjct:  127 LKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDAEELRHMVRVGTLARDRLVRAN--LRWVVAVAKKYHKQR------GTMSMQDLIQEGNIGLIRAVEKFDPRMGYRFTTYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQPTEAEIAEHVGLDPSRMRKFVESAAAVATVSLD---------------------VPINES-DNQSATIGDFIRSENEGPADRAERELMRESVARTLAKALSEREYMVLRMRFGLDDGEPKTLNQVGETLGVTRERVRQIEMKALRKLRRPGFSSA 424
[Close]
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: K9Y6K9_HALP7 (RNA polymerase, sigma 70 subunit, RpoD subfamily n=5 Tax=Cyanobacteria TaxID=1117 RepID=K9Y6K9_HALP7)

HSP 1 Score: 160 bits (406), Expect = 1.430e-41
Identity = 112/321 (34.89%), Postives = 176/321 (54.83%), Query Frame = 3 
Query:  438 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQ-NLICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRK 1397
            L+H+ E+ LG +VQ  M+L E K  L E LGR  T  EW  +AG+    L+  ++EG+ AK +M+  NL LV  I   +   KR             DL+QE TLGL R VEKFDP RGY+F+TYA WWIR+ +  ++ QQ   I +P+ + ++++KI +V +EL + LGR+ T  E+AE  G+ P Q+ E +++ + QP+ SLD  +G                   LS       +++   E  P       L +ES+R ++ +++   L  ++R  L LR+GL+DG   SLA+V + +  ++   R +   ++AKLR+
Sbjct:   33 LTHEQEIILGKQVQKMMKLIEQKEELEEELGREATDEEWTQKAGISQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQ--KRN--------MEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELAQKLGRNATPTEIAEELGLEPSQIRE-YLSIARQPI-SLDVRVG-------------DNQDTELS-------ELLEDDENSPETY----LTQESMRQDI-DSMLSELTPQQREVLSLRFGLEDGNELSLAKVGKKLNLSRERVRQLEHQALAKLRR 316
[Close]
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: A0A1C0VBJ4_9CYAN (RNA polymerase subunit sigma n=2 Tax=unclassified Limnothrix TaxID=2632864 RepID=A0A1C0VBJ4_9CYAN)

HSP 1 Score: 159 bits (403), Expect = 3.010e-41
Identity = 109/321 (33.96%), Postives = 167/321 (52.02%), Query Frame = 3 
Query:  438 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQN-LICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRK 1397
            L+H+ E+ LG +VQ    L+E K  LT RLG  P  AEWAA  GL L  LKA ++EGD AK +MV  NL LV  +   +   KR             DL+QE T+G+ R VEKFDP +GYRF+TYA WWIR+ +  ++ ++   I +P+ + ++++KI +  + L + LGR  T  E+ +  G++PKQ+ + ++  + QP+ SLD  +G                   L    PS  +   Q  LR  +                 T+   L  ++R  L LR+GL DG   +LA++ + +Q ++   R + R ++ KLRK
Sbjct:   24 LTHEQEIVLGKQVQRLNVLQEEKDKLTLRLGYEPGLAEWAAAIGLSLDELKAAIREGDRAKRKMVEANLRLVVSVAKKYI--KRN--------VDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRTLSQQLGRSATIAELGDEIGLSPKQIRD-YLERARQPL-SLDLRVG---------DNQDTELGELLEDEGPSPEEFATQSSLRGDI----------------ETIMADLTPQQREVLSLRFGLSDGQALTLAKIGDRLQISRERVRQIEREALTKLRK 307
[Close]
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: UPI0019DF3EF8 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019DF3EF8)

HSP 1 Score: 158 bits (400), Expect = 7.920e-41
Identity = 112/338 (33.14%), Postives = 172/338 (50.89%), Query Frame = 3 
Query:  438 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQN-LICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRKLCFSFAPEEREDLMGYL 1448
            L+H++E+ LG  VQ    L   + +L E+LGRSPT AEWA  +GL    L A ++EG+ AK +MV  NL LV  +   +   KR             DL+QE T+G+ R VEKFDP +GYRF+TYA WWIR+ +  ++ +++  I +P+ + ++++KI R  ++L +  GR  T  E+A    ++PK V E ++  S QP+ SLD  +G                +  L    PS  +   Q  LR  +                + L   L  ++R  L LR+GLDDG   +LA++ E +  ++   R + R ++ KLRK         R D+  YL
Sbjct:   23 LTHEEEIVLGKCVQRLTELERHREALEEKLGRSPTQAEWAEASGLSTQALAAAIREGEQAKRKMVEANLRLVVSVAKKYI--KRN--------VDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKRAQRQLSQKHGRTATVSELAAELELSPKLVRE-YLEKSRQPL-SLDLRVG---------DNQDTELSDLLEDDGPSPEEFATQAALRRDL----------------DKLMVDLTPQQRQVLNLRFGLDDGQTMTLAKIGEMLSISRERVRQIEREALTKLRK--------HRSDMREYL 315
[Close]
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: A0A1U7J1H4_9CYAN (RNA polymerase subunit sigma n=21 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A1U7J1H4_9CYAN)

HSP 1 Score: 158 bits (400), Expect = 1.010e-40
Identity = 107/321 (33.33%), Postives = 167/321 (52.02%), Query Frame = 3 
Query:  438 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQ-NLICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRK 1397
            L+H++E+  G +VQA M L E K  LTE LG  P+  EWA  AGL+ + L   +++G+ AK +M+  NL LV  I   +   KR             DL+QE TLGL R VEKFDP +GY+F+TYA WWIR+ +  ++ QQ   I +P+ + ++++KI RV +EL + LGR P   E+ E   + PKQ+ E  V  + QP+ SLD  +G                            +++    + P    +++  K+ +R      L   L  +++  + LRYGL+DG   SLA+V   M  ++   R + + ++  LR+
Sbjct:   33 LTHEEEIIFGKQVQAYMALLEQKEGLTETLGHEPSSNEWAEAAGLDEAQLNHTVRQGERAKRKMIEANLRLVVAIAKKYQ--KRN--------LEFLDLIQEGTLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELSQQLGRSPNANEIGEALELEPKQIREFLVL-ARQPI-SLDVRIG--------------------DNQDTELQELLEDDGISPETFTAQESLKQDIR-----NLLSELTPQQKEVITLRYGLEDGNELSLAKVGNRMNISRERVRQLEQQALKHLRR 316
[Close]
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: UPI001A0CF0F9 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Gloeomargaritaceae cyanobacterium C42_A2020_066 TaxID=2747801 RepID=UPI001A0CF0F9)

HSP 1 Score: 158 bits (399), Expect = 1.130e-40
Identity = 107/338 (31.66%), Postives = 176/338 (52.07%), Query Frame = 3 
Query:  438 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQN-LICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRKLCFSFAPEEREDLMGYL 1448
            L+H++E+ LG +VQ+  +L++ + SL E+LGR P+  EWAA AG+ L  L+  +Q G+ AK +M+  NL LV  +   +   KR             DL+QE T+G+ R VEKFDP +GYRF+TYA WWIR+ +  ++ +++  I +P+ + ++++KI +  ++L ++LGR  T  E+A    + P+QV + ++  + QP+ SLD  +G                   L     +  D   Q  LR  + G                +   L  ++R  L LRYGL+DG   +L+ + E +  ++   R + R ++ KLRK         R D+ GYL
Sbjct:   24 LTHEEEIRLGRQVQSLSQLQDQRTSLAEQLGREPSQEEWAAAAGISLWDLQRIVQAGERAKRKMIEANLRLVVAVAKKYV--KRN--------VDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQSLGRAATVGELAAELDLTPRQVRD-YLERARQPL-SLDVRVG---------DNQDTELGELLEDQGLTPEDFTDQTALRHEIQG----------------VMAELTPQQRRVLSLRYGLEDGQPLTLSRIGELLNISRERVRQIEREALTKLRK--------RRGDMRGYL 316
[Close]
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: UPI0019A4C0BC (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbyaceae cyanobacterium LF-bin-369 TaxID=2804781 RepID=UPI0019A4C0BC)

HSP 1 Score: 158 bits (399), Expect = 1.250e-40
Identity = 107/338 (31.66%), Postives = 177/338 (52.37%), Query Frame = 3 
Query:  438 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQNL-ICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRKLCFSFAPEEREDLMGYL 1448
            LSH+ E+  G +V A + L++L+  LT +L R PT  EWA+ A L+ + L  R+Q+G+ AK RM+  NL LV  +         ++ Q  D      DL+QE T+G+ R VEKFDP +GYRF+TYA WWIR+ +  ++ ++   I +P+ + ++++KI +  ++L + LGR  T  E+AEH  ++P+QV +       +   SLD  +G G                            +G +   P     +     ++R +L N L + L +++R  L LR+GL DG   +LA++ + ++ ++   R V R ++ KLRK         +  +MGYL
Sbjct:   28 LSHEQEIIYGKQVNALVALQDLRSQLTVQLDRLPTALEWASAADLDAATLNDRIQQGERAKRRMIEANLRLVVSVA--------KKYQKRD--VDLMDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKGRSIRLPIHIVEKLNKIKKAQRDLTQELGRVATTVELAEHLDLSPEQVRD--YLQYARSTISLDVRVGEG------------------------QETHLGDLLEDPGASPEDYTSARALRHDL-NKLMEDLTQQQREVLNLRFGLSDGQSLTLAKIGDRLKISRERVRQVEREALIKLRK--------RKIGVMGYL 320
[Close]
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Match: A0A1Z3HSX7_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Halomicronema hongdechloris C2206 TaxID=1641165 RepID=A0A1Z3HSX7_9CYAN)

HSP 1 Score: 158 bits (399), Expect = 1.410e-40
Identity = 110/338 (32.54%), Postives = 176/338 (52.07%), Query Frame = 3 
Query:  438 LSHQDELSLGSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDAAKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIRAVEKFDPERGYRFATYATWWIRKLLWESMQQQ-NLICVPVKVAQRVSKINRVTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGRGGGGGXXXXXXXXXXAVPLSXXVPSAMDVVGQVELRPRVMGSEKLWKESVRWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARAVARSSMAKLRKLCFSFAPEEREDLMGYL 1448
            L+H+ E+ LG +VQ  M L + K +L +RL R PTPAEWA  A +  + LK +L++G  AK +M+  NL LV  I   +   KR             DL+QE TLGL R VEKFDP +GY+F+TYA WWIR+ +  ++ QQ   I +P+ + ++++KI R+ +EL ++LGR P   E+A+   + PKQV + ++  + QP+ SLD  +G                            +++    + P     ++  K+ +R  LA      L  +++  + LRYGL+DG   SLA+V   M  ++   R + + ++  LR+         + D+  YL
Sbjct:   33 LTHEQEIVLGKQVQQMMTLLDTKEALEDRLDREPTPAEWAEAADIPEAELKTKLRQGQRAKRKMIEANLRLVVAIAKKYQ--KRN--------LEFLDLIQEGTLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRIQRELSQSLGRSPNAIEIADALELEPKQVRD-YLLMARQPI-SLDVRIG--------------------DNQDTELQELLEDDSVSPENYTVQESLKQDIRDLLAE-----LTPQQKEVITLRYGLEDGNELSLAKVGHRMNISRERVRQLEQQALKHLRR--------RKADVRSYL 325
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNH6_ECTSI3.190e-4637.87RNA polymerase sigma factor SigD n=2 Tax=Ectocarpu... [more]
A0A8J7E1T7_9CYAN1.150e-4235.96RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
Q8S9C9_CYAPA3.830e-4233.54RNA polymerase sigma factor n=1 Tax=Cyanophora par... [more]
K9Y6K9_HALP71.430e-4134.89RNA polymerase, sigma 70 subunit, RpoD subfamily n... [more]
A0A1C0VBJ4_9CYAN3.010e-4133.96RNA polymerase subunit sigma n=2 Tax=unclassified ... [more]
UPI0019DF3EF87.920e-4133.14RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A1U7J1H4_9CYAN1.010e-4033.33RNA polymerase subunit sigma n=21 Tax=Cyanobacteri... [more]
UPI001A0CF0F91.130e-4031.66RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
UPI0019A4C0BC1.250e-4031.66RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A1Z3HSX7_9CYAN1.410e-4032.54RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1338255..1344937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue2.1e-44
Seed eggNOG ortholog2880.D8LNH6
EggNOG free text desc.Sigma-70 region 2
EggNOG OGs2SJXU@2759,COG0568@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionRNA polymerase sigma-70 like domain
Ec32 orthologEc-04_003820.1
Exons7
Model size1487
Cds size1296
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817280.5485623-UTR-S-ischiensis_contig8:1338254..13382811622817280.5485623-UTR-S-ischiensis_contig8:1338254..1338281Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1338255..1338281 -
1695740992.041364-UTR-S-ischiensis_contig8:1338254..13382811695740992.041364-UTR-S-ischiensis_contig8:1338254..1338281Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1338255..1338281 -
1622817280.6429405-UTR-S-ischiensis_contig8:1344773..13449371622817280.6429405-UTR-S-ischiensis_contig8:1344773..1344937Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1344774..1344937 -
1695740992.1749752-UTR-S-ischiensis_contig8:1344773..13449371695740992.1749752-UTR-S-ischiensis_contig8:1344773..1344937Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1344774..1344937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817280.5627422-CDS-S-ischiensis_contig8:1338281..13384741622817280.5627422-CDS-S-ischiensis_contig8:1338281..1338474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1338282..1338474 -
1695740992.0675318-CDS-S-ischiensis_contig8:1338281..13384741695740992.0675318-CDS-S-ischiensis_contig8:1338281..1338474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1338282..1338474 -
1622817280.574398-CDS-S-ischiensis_contig8:1339404..13397661622817280.574398-CDS-S-ischiensis_contig8:1339404..1339766Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1339405..1339766 -
1695740992.0791538-CDS-S-ischiensis_contig8:1339404..13397661695740992.0791538-CDS-S-ischiensis_contig8:1339404..1339766Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1339405..1339766 -
1622817280.585004-CDS-S-ischiensis_contig8:1341762..13419041622817280.585004-CDS-S-ischiensis_contig8:1341762..1341904Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1341763..1341904 -
1695740992.092957-CDS-S-ischiensis_contig8:1341762..13419041695740992.092957-CDS-S-ischiensis_contig8:1341762..1341904Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1341763..1341904 -
1622817280.5963655-CDS-S-ischiensis_contig8:1342909..13430421622817280.5963655-CDS-S-ischiensis_contig8:1342909..1343042Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1342910..1343042 -
1695740992.1120312-CDS-S-ischiensis_contig8:1342909..13430421695740992.1120312-CDS-S-ischiensis_contig8:1342909..1343042Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1342910..1343042 -
1622817280.6089818-CDS-S-ischiensis_contig8:1343477..13436341622817280.6089818-CDS-S-ischiensis_contig8:1343477..1343634Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1343478..1343634 -
1695740992.1321626-CDS-S-ischiensis_contig8:1343477..13436341695740992.1321626-CDS-S-ischiensis_contig8:1343477..1343634Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1343478..1343634 -
1622817280.6201136-CDS-S-ischiensis_contig8:1344348..13445051622817280.6201136-CDS-S-ischiensis_contig8:1344348..1344505Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1344349..1344505 -
1695740992.1438696-CDS-S-ischiensis_contig8:1344348..13445051695740992.1438696-CDS-S-ischiensis_contig8:1344348..1344505Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1344349..1344505 -
1622817280.6316347-CDS-S-ischiensis_contig8:1344621..13447731622817280.6316347-CDS-S-ischiensis_contig8:1344621..1344773Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1344622..1344773 -
1695740992.156296-CDS-S-ischiensis_contig8:1344621..13447731695740992.156296-CDS-S-ischiensis_contig8:1344621..1344773Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1344622..1344773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19420.1prot_S-ischiensis_contig8.19420.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1338282..1344773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19420.1

>prot_S-ischiensis_contig8.19420.1 ID=prot_S-ischiensis_contig8.19420.1|Name=mRNA_S-ischiensis_contig8.19420.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=432bp
MRHFVQWSCAFFALSCRSGPVEVAGFMPMSLAGHSSCARRPQRGLPRQRS
WSASMAASSAAAAGTAERLRKGGFQVTTWSKKPGGNKSSRRLSHQDELSL
GSKVQAAMRLRELKMSLTERLGRSPTPAEWAAEAGLELSVLKARLQEGDA
AKDRMVVLNLGLVWHIVGAHTGGKRRRGQGSDGPFSQTDLVQEATLGLIR
AVEKFDPERGYRFATYATWWIRKLLWESMQQQNLICVPVKVAQRVSKINR
VTQELKRALGRDPTEEEVAEHAGVAPKQVHECWVTGSLQPMASLDAYMGR
GGGGGRGAEMGSGKEAVPLSEAVPSAMDVVGQVELRPRVMGSEKLWKESV
RWELANTLFKILDRRERTCLRLRYGLDDGPVHSLAEVAEAMQTTKAEARA
VARSSMAKLRKLCFSFAPEEREDLMGYLLVS*
back to top

mRNA from alignment at S-ischiensis_contig8:1338255..1344937-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19420.1 ID=mRNA_S-ischiensis_contig8.19420.1|Name=mRNA_S-ischiensis_contig8.19420.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6683bp|location=Sequence derived from alignment at S-ischiensis_contig8:1338255..1344937- (Schizocladia ischiensis KU_0333)
GCTGTTAGAACGGGGCCACGCGCTCCTATATCGAGGGCTTTCGCCCGCTC
CCGGACGGCACACAAATAACCATCTCTGCTGCGTGTGTGTGGCTGGGGCT
GTGGAGCACCGTCGCGTGCTGCTGCTCGATATTGCGCAAAGAGAGAAAGG
AGCCAGTGGTAACGATGCGGCACTTCGTTCAATGGAGTTGCGCCTTCTTC
GCGTTGTCCTGCCGGTCGGGGCCGGTCGAGGTAGCCGGCTTCATGCCAAT
GTCTCTGGCTGGGCACTCGTCTTGCGCTCGACGACCACAAAGGGGCTTGC
CTCGTCAACGGTCGTGGTGAGTGTTGATGAGGGGCAACGCCGGGTTGAGG
TTTCACATTACCCAAGACAGAGCGCTGGCAGCACCTTTCCGGGTACTGAA
GCACCTGGGCCGCCGTTTTTCTGTCCTTGCAGGTCCGCGAGTATGGCGGC
GTCGAGCGCGGCGGCCGCTGGCACGGCCGAGCGGTTGCGGAAAGGCGGCT
TTCAGGTGACAACTTGGAGCAAAAAGCCGGGTGGCAACAAGTCCTCGCGG
CGATTATCTCACCAGGATGAACTTTCTTTGGGGTCCAAGGTAAGTCACTG
TTTGTCCTGGCCCTGGTGGGTGCTCTGGAAACTGGGTGGTCTACCTGTGT
CTGCCTGTGTCGACATGCTGTGCTGTTGCCCACGTGCCTGTGTGCCCGTG
GCTCGTTGTCCGTTTCCGAGCAGCCGGGCTCTGTTTGCTACTTGGTCGCT
CGTGGCTTGGTTCGAAGTCCGCCTCTTGGCGTGCACAGTAGCCCCCTTGA
CGCAACGGCCGACAACGACCAGGATGCGGGAACATGTGTCTTCCCTGCGC
CACCCACCCATTGCAGCAGACCTTCCTTCAGGTACAATCCCCCCAAAACT
GGCCGTCTACGCAAACAGCTCTCGTCCCTGGGCAGCACCAGGCGGGCAGC
TATAACCCACTCTCGTCTTTTCCGTCAGTAATGCACGCCACAACATGCAC
ACGTGACATACACACGCCCACAACATGAATGCCGTGAGCCCCGAAGAGGC
CATGGCACTCACTAATCGCACGCCCCCCTCACTGAAGGATGGGCACTTGC
ACTGTACTGGTCACCGCCATGTACCGCCGTTTTCACTTGTCCACGCCTGG
CATTGCGCCCCGAAGAGGCCATGGCACTCACTGATCGCACACCCCCCTCA
TTGAAGGATGGGCACTTGCACTGTACTGGTCACCGCCATGTACCGCCGTT
TTCACTTGTCCACGCCTGGCATTGCGCCCCCCTCCACCTCCTCCTACACG
CAGGTCCAGGCTGCGATGCGGCTACGAGAGCTCAAGATGTCCCTCACAGA
GAGGTTGGGGAGGAGTCCAACCCCCGCCGAGTGGGCGGCGGAGGCGGGGC
TCGAGCTCTCGGTGCTCAAGGCCCGGCTGCAGGAGGGGGACGCGGCCAAG
GACAGGATGGGTGAGTGCATGCGTGTGTGAGCGCGTGCGATTCCGTGCGT
GCGCAAGTGTGTGCATGCGCGTGTATGCGTGTATTGGTGCAGGTGTAGAG
TACAGTAGCGCTGGCCGCGAGGTGCAATTGTTGTACCCACACTTTGGGAA
AAAGGGGGACGCTCTGAACTCGGAAGGTGAAAATTATTATGAAATTAAAG
GGTATTTCCAGCTGTCAGCAGTCTCTGCACGACGGCACGCGCGACAATGT
AAGTGTTCGCCCATCTACCTGTGCTGCTGCAAAGCTTCTACTTTTCACGT
GGCTCCATCTGCTGCCCGTGTTCCTGGCGGGTGTGTCCAATCCTTTTCCC
CTACTCGGGCCAGCCGACCCCACTGCCCCAACGATCGCGAACAAAGCAAC
CTAGCTACTTTGCTCACCCTGTGAACCGTCTCCCCCAACCCGCAGTGGTG
CTGAATCTGGGCCTGGTGTGGCATATTGTCGGGGCGCACACGGGGGGGAA
GCGGCGGCGGGGCCAAGGCTCAGACGGGCCATTCTCGCAAACAGACCTTG
TGCAGGAGGCAACGCTGGGACTCATCAGGTGAGCCAACAGAGCGGCGCGT
GGGACCGGGGGGGGGGGGGGCAGTATGCTCCTGCAGCGTGTGGAAAGAAT
CGTGTGGATTTGTGACGTACTTCAAGTAGCAACCTGCATTGATGTGTCCA
GATGCTTCCAAGGTAGGTGAGGCGTACTTGGCGGATTTGGTCAATGGTCC
CGGTCTAAGGCGAGTGTGGCGTGTGTGAGTGCCATGTACACTGCTCTTCG
TAGGCATGAGTACAGTAGTTGATGTTTTGGCCGAGAAAAGCGCAAGGGAA
GGGATAGATTTGAGTGTGGGCGCGCACGACTGAATCCGCCAGGGCTGGTG
GGTTGTACTGGGCGCAGTCGAAGGTCTTCGGACTAAGCACGCGCAAGATG
AACACGCACAAGTAGTGGTACAGGTAGTGGTAACATGAACACGTATAAGT
AGTGGTGGCTCTCGGGGGCCTGGAGGGCGAGCTGTGGGCCAAAGGTCTCC
GCTCTCGGCAAAATAGCCAGCAGTCTCCACCAGACTGAAGGAACGTGTGG
TTACACGCCGCATGTGCCCGGTGGATACACACTCGTCGGAGGGTTAAAGG
TGTACAACACACAGGGCGGCAATACAACTTTTAGGGCGGTACAGGAGTGT
AGCGTGTGGGCGGTGTGCCAATTGTCCTGGGAGTAGGTGCTACTACTGTA
CTGCAGTAGTGCCAATACTTGATGCCTTCGGCCTTGCGCAGCTGAATGAG
CAGAAGGCGTGAAGTACAATAGGGAAGTTGGCTGGTTGAAGTTGTCAGAA
AAATTGGAAGTTGAAGCGGGCACATTGGAGAGAATGCAGTTCGACCCGCC
GGGTGCGCATATAGTCTCTCTCTCTCTCTCTCTATCTATATATCTCTCCC
TCTCCCTCTCCATCCCCCTCTCTATATCTGTGTGTCTCTGCCTCTCCAAC
TCATGCCTGGTGCCTCGTGCTCCCCCACTCCTCACTCCCCCCACAATGAC
CACGCCGCACACACACACACACACTGGGAACAGGGCGGTGGAGAAGTTTG
ACCCTGAAAGGGGGTACCGGTTTGCCACGTACGCCACGTGGTGGATCCGC
AAGCTCTTGTGGGAGAGCATGCAGCAGCAGAACCTCATCTGCGTCCCGGT
GAAGGTGGCACAACGCGTGTCCAAGGTGAGAGTGGTGGGGGCTGTGTGTC
TGTGGGGGTCAGTGATGCAATATCGATCAGTAGATAGTTATCGGGCTCGA
CTGATTTTGTGGGTGGCGTTACTCTCAGGTACGCAACGGGTTCCGTCATC
GGCGCCGCTTCTGCATGTCCCGCTTTGTGGCACAAGAGACCCCTCCTCCA
CTGCCATTCCCTCCCGCCCTCCTCCTCCTTTGGTTTTCTTTGTTTTTCTT
TGTTTTTCGCTCTATGTGCCCTGCGAGTGAAGGCCGAGTGAAAAGACGGG
CTTCCGGGGCAGGGGGCCCTGAACTCGCGTAAGTAGGAACACCTCCTCTT
TCCACTCGCTTTTCATCCTCATGCCAAAAACTACTTGGTAGGTAGTGTGG
GTCAAGTATCGAATATCGACTATCGATATACCCGGGTATATATTTACAGT
CAGTACTGTCGATAAATAGGTTGATTTGCTTAGATATTCCATCACTGATG
GGGGTGCTCCTTGGAAGGAAGCGAAGCCTCGAGCAACCGCCTTGCATCAC
GCTTGTGCTTCGAAGTATGCTTTTCTTTTTTCCTCTCCTTTGCCGCCCGC
GAACGGGTTTGCACGCGCGTGCTGTAGGGGGGGAGATGGGTTTTTCCAGA
CGTGGGTGTAGAGTATGTGTGGTCGACGTACGGTCTCTGGGTCTAGAGTA
GACGGCAGGTACAGCGTGGGGCTAGTACAGAAGTGCATGCATATGTGCAG
GTAGGAGTGCCGTTGCTTGTGTAACTGGCGGAGTGTGAACATGGGCATTT
GTTCTCCGTCTCGGTCGAGGAGCAGTTGGTCGGTGGTCTCGGGGCCTCGG
GACTGCAGCAGGCACAAGGAGAGTACACCAACACACACACACACACATAT
CTGCTGCAGCAAGTGTGTAGCTCGAGTACGTATGTATATATATGTGCAGT
GCTCACACTGTGCTTGCCGTAGCCCCGAGAAGATTGACCACGCGTCTCGA
TCGACACGGAGCAGGCATGTACACACAAATACATACACATGAACACACAC
AAATTCTACAGCGAGTGTGTAGCTCTGAGTATGTATGCACACACAATACA
TGTACACATGTACATATAGGGGTCCTGCTCCGTCTCGAACGAGTCGCGGG
GTCAATGGTCTCGGGACTACGGCAAGCACCACGTGAGTACATATATATAT
ATATGAACGAGACGCGGGCTCAATGGTCTCGGGACTGCGGCAAGCACCAC
GTGAGTACACACACATATATATAGAGAGATATGTGGTTCGAAGACAAGTA
GGAGAACGTACTTCTACTAGTGCAAGTGCCCTCTTGCTTTGTGCGCGGCG
GCGTTGTCCTGGGGCGTGGGTTTAGGCCTGCAGAAGCAGCCCCCCAACGG
GCTGCCCGGCGCTGTTGCCAGGGCACCGTATATAGCTCCCAGCCGCTCTC
GCCATGCCTGAGTGAGGCCTCGTTTCACGCTTGAGTCTTTTTCATTGGGA
GGATGGCGCCACACTGATGGCACGCAGGATCGAATTGCTGTTGTACTCGT
ACAGTTTTTGTGTTCCCTCGTCCTCTAAGGCTGACTCTCTTGTGGCGCGC
CGTACGAGAGCCGCTACTGTAGGTATACTCGTACGGTACTGTGTGTACGT
GGGACAGGGCGGTATGACGTAAGTACAGCGGTGGCAAGTACACGCAGCGG
TTGTAGTGCTAGTAACGGGGCCAAATGTTGGAGTCGTTAGCGAAGCTGTT
GTCCGGGTAGTGCACGGGTAGTGCAGAGTACAATTATGGTACTGGCAGTA
TGTACCCATGTGCTTGCCTTTCGACAGAACCTTTCGTAGTCCAGCATGTG
TTCGTACCTGAGTTTCCCCAGCCCAACCCATCGGAGACGCTCCGTCCCGC
CAACAAACAAGCAAGCAAGCGCTTCGCCCTCCCTCATGCAGAGTACCTCG
CTCTCCCCTCCCCCCGACCCCACCCCCACCCCCCCCTCCCTCCCCCCCCC
CCCCCCCCTCCTCCACAACAGATCAACCGCGTCACGCAGGAGCTCAAGCG
GGCCCTCGGCCGCGACCCGACGGAGGAGGAGGTGGCGGAGCACGCCGGCG
TGGCGCCCAAACAGGTCCACGAGTGCTGGGTCACGGGGTCCCTCCAGCCC
ATGGCGTCGCTGGACGCCTACATGGGGCGGGGGGGCGGCGGCGGGCGCGG
CGCGGAGATGGGCTCCGGGAAAGAGGCGGTGCCGCTGTCGGAGGCGGTGC
CCTCAGCGATGGACGTGGTGGGGCAGGTGGAGCTCCGGCCGCGGGTGATG
GGGTCGGAGAAGCTGTGGAAGGAGTCGGTGCGCTGGGAGCTGGCCAACAC
CCTCTTCAAGATACTGGACAGGCGGGAAAGGACGTGAGTGGTGATTCGTA
TAGGTTGCAACGAGGTACAATCGCGCGTGTGTAGATTGAGGGCTCTCACA
CGCGCGATTGAGTGCTCTCGTGTTCTCGTATGAGTGATTATCGCATCAAG
GAACCAAGAACAAGGAAGGGGGAAAAAGGGGGCGTGTGTGCACACGGCAT
GCGTGCTTGCATGCGTGCTGGCTGGCTGGCTGGCTGTGTGCGGTTGTGTG
TGTGCATGTATATGTGCACGCACGCACGCACACATGCACACACACAGAGA
GACGTCGCTGTGCTTGCTTGATTGATTCGGCCACGAATGGCTCCCCCACG
GGGAGGGGGGGGCCAGAAGATGTTGGGTGGGCTGACGAAGATTTTATCTG
CTCATCTTTTTCGTAGTAGCTCACGTGCGCGTGACGAGCACGCACGCTTG
TGGCGATTCAGCGCGAGGTGTGGAACAGATACCCTGGCCCTCCGGCCCTC
CGCCCCTTCCCCACACAAGCCTTTCCTGGCGAGCTACGTAAAGAAGGGCC
ACTGTTGATTGTTTCCGATACCTGGAGCCCCTTGTCGAGCTGGGCAAACA
ACCCTGGCCGACAAGGTGGTGGCAGTGCCCCGCCAGTTCCCCACGGCGTC
AACCTCGCCCCAGGAGGCAGCCGGAGCATGCCACCACACCTCTCAAGGTG
CTGGACCTTTTGTGCTGTTGTTGTTTGTCACATTGACCGCCCCGTCCAAC
CCGCCGCCCGCCTGCCTTTCGTTTGGTCCCTTGCCCGCTCTGCTGTGATT
CATATGAATTGTAGCGAGGTACAGTCGCACGTGTGTGAGATCGACTGTTC
TCGTATTTCTGTGTACTGTAGTTGTCCCATTTAAGCATTGAGTGTTCTTA
TATTGCCCGCTCTGCTGTCGTGCCGGCGCCGCCCCCGCCCGCCTCTTGCG
TGCTCCTGAGCAGGTGCCTCCGGCTCAGGTATGGGCTGGATGACGGGCCG
GTCCACTCGCTGGCGGAGGTGGCGGAGGCCATGCAAACCACCAAGGCGGA
GGCGCGGGCAGTGGCTCGGTCTTCAATGGCCAAGCTGCGCAAGCTGTGCT
TCTCCTTCGCCCCGGAGGAGCGGGAAGACCTGATGGGGTACCTCTTGGTT
TCATGACATCTATCCTATGTAGCTGCCAGACTT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:1338255..1344937-

>mRNA_S-ischiensis_contig8.19420.1 ID=mRNA_S-ischiensis_contig8.19420.1|Name=mRNA_S-ischiensis_contig8.19420.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2592bp|location=Sequence derived from alignment at S-ischiensis_contig8:1338255..1344937- (Schizocladia ischiensis KU_0333)
ATGCGGCACTTCGTTCAATGGAGTTGCGCCTTCTTCGCGTTGTCCTGCCG
GTCGGGGCCGGTCGAGGTAGCCGGCTTCATGCCAATGTCTCTGGCTGGGC
ACTCGTCTTGCGCTCGACGACCACAAAGGGGCTTGCCTCGTCAACGGTCG
TGATGCGGCACTTCGTTCAATGGAGTTGCGCCTTCTTCGCGTTGTCCTGC
CGGTCGGGGCCGGTCGAGGTAGCCGGCTTCATGCCAATGTCTCTGGCTGG
GCACTCGTCTTGCGCTCGACGACCACAAAGGGGCTTGCCTCGTCAACGGT
CGTGGTCCGCGAGTATGGCGGCGTCGAGCGCGGCGGCCGCTGGCACGGCC
GAGCGGTTGCGGAAAGGCGGCTTTCAGGTGACAACTTGGAGCAAAAAGCC
GGGTGGCAACAAGTCCTCGCGGCGATTATCTCACCAGGATGAACTTTCTT
TGGGGTCCAAGGTCCGCGAGTATGGCGGCGTCGAGCGCGGCGGCCGCTGG
CACGGCCGAGCGGTTGCGGAAAGGCGGCTTTCAGGTGACAACTTGGAGCA
AAAAGCCGGGTGGCAACAAGTCCTCGCGGCGATTATCTCACCAGGATGAA
CTTTCTTTGGGGTCCAAGGTCCAGGCTGCGATGCGGCTACGAGAGCTCAA
GATGTCCCTCACAGAGAGGTTGGGGAGGAGTCCAACCCCCGCCGAGTGGG
CGGCGGAGGCGGGGCTCGAGCTCTCGGTGCTCAAGGCCCGGCTGCAGGAG
GGGGACGCGGCCAAGGACAGGATGGGTCCAGGCTGCGATGCGGCTACGAG
AGCTCAAGATGTCCCTCACAGAGAGGTTGGGGAGGAGTCCAACCCCCGCC
GAGTGGGCGGCGGAGGCGGGGCTCGAGCTCTCGGTGCTCAAGGCCCGGCT
GCAGGAGGGGGACGCGGCCAAGGACAGGATGGTGGTGCTGAATCTGGGCC
TGGTGTGGCATATTGTCGGGGCGCACACGGGGGGGAAGCGGCGGCGGGGC
CAAGGCTCAGACGGGCCATTCTCGCAAACAGACCTTGTGCAGGAGGCAAC
GCTGGGACTCATCAGTGGTGCTGAATCTGGGCCTGGTGTGGCATATTGTC
GGGGCGCACACGGGGGGGAAGCGGCGGCGGGGCCAAGGCTCAGACGGGCC
ATTCTCGCAAACAGACCTTGTGCAGGAGGCAACGCTGGGACTCATCAGGG
CGGTGGAGAAGTTTGACCCTGAAAGGGGGTACCGGTTTGCCACGTACGCC
ACGTGGTGGATCCGCAAGCTCTTGTGGGAGAGCATGCAGCAGCAGAACCT
CATCTGCGTCCCGGTGAAGGTGGCACAACGCGTGTCCAAGGGCGGTGGAG
AAGTTTGACCCTGAAAGGGGGTACCGGTTTGCCACGTACGCCACGTGGTG
GATCCGCAAGCTCTTGTGGGAGAGCATGCAGCAGCAGAACCTCATCTGCG
TCCCGGTGAAGGTGGCACAACGCGTGTCCAAGATCAACCGCGTCACGCAG
GAGCTCAAGCGGGCCCTCGGCCGCGACCCGACGGAGGAGGAGGTGGCGGA
GCACGCCGGCGTGGCGCCCAAACAGGTCCACGAGTGCTGGGTCACGGGGT
CCCTCCAGCCCATGGCGTCGCTGGACGCCTACATGGGGCGGGGGGGCGGC
GGCGGGCGCGGCGCGGAGATGGGCTCCGGGAAAGAGGCGGTGCCGCTGTC
GGAGGCGGTGCCCTCAGCGATGGACGTGGTGGGGCAGGTGGAGCTCCGGC
CGCGGGTGATGGGGTCGGAGAAGCTGTGGAAGGAGTCGGTGCGCTGGGAG
CTGGCCAACACCCTCTTCAAGATACTGGACAGGCGGGAAAGGACATCAAC
CGCGTCACGCAGGAGCTCAAGCGGGCCCTCGGCCGCGACCCGACGGAGGA
GGAGGTGGCGGAGCACGCCGGCGTGGCGCCCAAACAGGTCCACGAGTGCT
GGGTCACGGGGTCCCTCCAGCCCATGGCGTCGCTGGACGCCTACATGGGG
CGGGGGGGCGGCGGCGGGCGCGGCGCGGAGATGGGCTCCGGGAAAGAGGC
GGTGCCGCTGTCGGAGGCGGTGCCCTCAGCGATGGACGTGGTGGGGCAGG
TGGAGCTCCGGCCGCGGGTGATGGGGTCGGAGAAGCTGTGGAAGGAGTCG
GTGCGCTGGGAGCTGGCCAACACCCTCTTCAAGATACTGGACAGGCGGGA
AAGGACGTGCCTCCGGCTCAGGTATGGGCTGGATGACGGGCCGGTCCACT
CGCTGGCGGAGGTGGCGGAGGCCATGCAAACCACCAAGGCGGAGGCGCGG
GCAGTGGCTCGGTCTTCAATGGCCAAGCTGCGCAAGCTGTGCTTCTCCTT
CGCCCCGGAGGAGCGGGAAGACCTGATGGGGTACCTCTTGGTTTCATGAG
TGCCTCCGGCTCAGGTATGGGCTGGATGACGGGCCGGTCCACTCGCTGGC
GGAGGTGGCGGAGGCCATGCAAACCACCAAGGCGGAGGCGCGGGCAGTGG
CTCGGTCTTCAATGGCCAAGCTGCGCAAGCTGTGCTTCTCCTTCGCCCCG
GAGGAGCGGGAAGACCTGATGGGGTACCTCTTGGTTTCATGA
back to top