mRNA_S-ischiensis_contig11.1957.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1957.1
Unique NamemRNA_S-ischiensis_contig11.1957.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:14306..15335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1957.1prot_S-ischiensis_contig11.1957.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 14306..15250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.5565395-CDS-S-ischiensis_contig11:14305..143821622815575.5565395-CDS-S-ischiensis_contig11:14305..14382Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 14306..14382 +
1695739779.9633884-CDS-S-ischiensis_contig11:14305..143821695739779.9633884-CDS-S-ischiensis_contig11:14305..14382Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 14306..14382 +
1622815575.5700872-CDS-S-ischiensis_contig11:15135..152501622815575.5700872-CDS-S-ischiensis_contig11:15135..15250Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 15136..15250 +
1695739779.9731338-CDS-S-ischiensis_contig11:15135..152501695739779.9731338-CDS-S-ischiensis_contig11:15135..15250Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 15136..15250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.5820305-UTR-S-ischiensis_contig11:15250..153351622815575.5820305-UTR-S-ischiensis_contig11:15250..15335Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 15251..15335 +
1695739779.9830163-UTR-S-ischiensis_contig11:15250..153351695739779.9830163-UTR-S-ischiensis_contig11:15250..15335Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 15251..15335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1957.1

>prot_S-ischiensis_contig11.1957.1 ID=prot_S-ischiensis_contig11.1957.1|Name=mRNA_S-ischiensis_contig11.1957.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=64bp
MLVAPTVAHHDSGTWKYSSTYAGAQSGGYRHSAVGLRTRALYLQYIRLAK
CLPVLLLEVLVLL*
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mRNA from alignment at S-ischiensis_contig11:14306..15335+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1957.1 ID=mRNA_S-ischiensis_contig11.1957.1|Name=mRNA_S-ischiensis_contig11.1957.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1030bp|location=Sequence derived from alignment at S-ischiensis_contig11:14306..15335+ (Schizocladia ischiensis KU_0333)
ATGCTCGTAGCACCTACTGTGGCACATCATGACTCGGGTACTTGGAAGTA
CTCGAGTACATACGCGGGAGCTCAAAGCGGCGTGTTTTTCGCACCCCCGC
CGGGGACCAGTCCTGACACGGTGTCCCCGCCGTGCCCCCGTCCACCTCGC
GAGCTGCAAGTTGCTCAAATCCGCTAGCAGTTCCTGCACACGTGTTGTCT
GGTGGCGGCCCCGCGGCCGGCAGCCCCTGCCCCCAGTAGCCACCCTTGCT
GGTAGCCCTGGCCGTAGTAGGCAGCCCCGGCGTAGCCGCCGCCGCCTGCC
TCCTGGTACGGGTCGGCCCCCTCCCCGTAGTCCCCCTCCCCAAAGAGGTC
CTCCTCCTCGGCGGTCGGTGCAATTTATATGAATCACTCGCCTTTGCACT
TGTTGCTGGACGGTCGGCAGGCGGGCTCGTCCCCCGTGCAATGGCTGTCA
TTGACGCACTCCTTGCCTGCCGTGGCGACGCACACCGCCATCCACCGCGG
CAGGCAAGGAGTGCGTCAATGACAGCCATTGCACGGGGGACGAGCCCGCC
TGCCGACCGTCCAGCAACAAGCGCAAAGGTGAGTGATTAAATTGCACCGG
CCGCCGAGGAGGACCCCTTTGGGGCCCATACCAGGAGGCAGGCGGCGACG
GCTACGCCGGGGCTGCCTACTATGGCCAGGGCTACCAGCAAGGGTGGCTA
CTGGGGGCAGGGGCTGCCGGCCGCGGGCCCGCCATCAGACAACGTACAGG
AACTGCTGACGGATCTGAGCAACTCGCCGCTCGCGAGGTGGACGGGGGCA
CGGCGTGGACACCTTGTCAGGACTGGTCCCCGGCGGTTATCGTCACTCCG
CGGTAGGACTACGCACTAGAGCTCTATACCTACAGTATATACGCCTTGCC
AAGTGTTTACCGGTCCTACTTCTGGAAGTACTCGTACTTCTGTAACTCCA
AGTACTGTATACACGTCTGTACAAAGTGCCATGCTGAACGAGTAGTACCT
CGACGTATTTTTAACTATGCAGTGACGATG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:14306..15335+

>mRNA_S-ischiensis_contig11.1957.1 ID=mRNA_S-ischiensis_contig11.1957.1|Name=mRNA_S-ischiensis_contig11.1957.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=384bp|location=Sequence derived from alignment at S-ischiensis_contig11:14306..15335+ (Schizocladia ischiensis KU_0333)
ATGCTCGTAGCACCTACTGTGGCACATCATGACTCGGGTACTTGGAAGTA
CTCGAGTACATACGCGGGAGCTCAAAGATGCTCGTAGCACCTACTGTGGC
ACATCATGACTCGGGTACTTGGAAGTACTCGAGTACATACGCGGGAGCTC
AAAGCGGCGGTTATCGTCACTCCGCGGTAGGACTACGCACTAGAGCTCTA
TACCTACAGTATATACGCCTTGCCAAGTGTTTACCGGTCCTACTTCTGGA
AGTACTCGTACTTCTGTAACGGCGGTTATCGTCACTCCGCGGTAGGACTA
CGCACTAGAGCTCTATACCTACAGTATATACGCCTTGCCAAGTGTTTACC
GGTCCTACTTCTGGAAGTACTCGTACTTCTGTAA
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