mRNA_S-ischiensis_contig8.19577.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19577.1
Unique NamemRNA_S-ischiensis_contig8.19577.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2287848..2288307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.615704-CDS-S-ischiensis_contig8:2287847..22881861622817267.615704-CDS-S-ischiensis_contig8:2287847..2288186Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2287848..2288186 +
1695740981.5369112-CDS-S-ischiensis_contig8:2287847..22881861695740981.5369112-CDS-S-ischiensis_contig8:2287847..2288186Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2287848..2288186 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.6263666-UTR-S-ischiensis_contig8:2288186..22883071622817267.6263666-UTR-S-ischiensis_contig8:2288186..2288307Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2288187..2288307 +
1695740981.5489566-UTR-S-ischiensis_contig8:2288186..22883071695740981.5489566-UTR-S-ischiensis_contig8:2288186..2288307Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2288187..2288307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19577.1prot_S-ischiensis_contig8.19577.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2287848..2288186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19577.1

>prot_S-ischiensis_contig8.19577.1 ID=prot_S-ischiensis_contig8.19577.1|Name=mRNA_S-ischiensis_contig8.19577.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=113bp
RPGRGAAGRIPRRRGHGGWGGLRAFPSHASWPSRPGWVPRTGQEAGGRGR
SRRRHHWGQDPGQSQGRDRDRGWGRGRGHWWSPGAGNGRRGMPEARWGPP
SLRSPGAATVRC*
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mRNA from alignment at S-ischiensis_contig8:2287848..2288307+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19577.1 ID=mRNA_S-ischiensis_contig8.19577.1|Name=mRNA_S-ischiensis_contig8.19577.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=460bp|location=Sequence derived from alignment at S-ischiensis_contig8:2287848..2288307+ (Schizocladia ischiensis KU_0333)
CGCCCCGGTCGCGGAGCAGCGGGGCGGATCCCGAGGCGGCGAGGCCATGG
TGGGTGGGGTGGCTTGCGTGCTTTTCCGTCGCATGCCTCGTGGCCGTCAC
GGCCGGGTTGGGTCCCTCGGACGGGCCAGGAGGCTGGGGGGCGGGGCCGG
AGCCGGCGTCGTCACCACTGGGGCCAGGACCCGGGCCAGAGTCAGGGCCG
GGACCGGGACCGGGGCTGGGGCCGGGGCCGCGGCCATTGGTGGAGCCCGG
GTGCAGGTAATGGGAGACGGGGGATGCCGGAGGCCAGGTGGGGGCCGCCG
TCGCTGAGGAGTCCTGGCGCTGCGACGGTGCGCTGCTAGGCCGCTGCCTG
CGAACGAGCTCGTGTTGCTGCTTCTCTGCGGCGGCCACTGCCGCCACATC
CCCTTCCGGCGCCTGCTGCTGCAGCCGTTCCTGCTCCCACACCTGAGGCG
GCGGCAGCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2287848..2288307+

>mRNA_S-ischiensis_contig8.19577.1 ID=mRNA_S-ischiensis_contig8.19577.1|Name=mRNA_S-ischiensis_contig8.19577.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=678bp|location=Sequence derived from alignment at S-ischiensis_contig8:2287848..2288307+ (Schizocladia ischiensis KU_0333)
CGCCCCGGTCGCGGAGCAGCGGGGCGGATCCCGAGGCGGCGAGGCCATGG
TGGGTGGGGTGGCTTGCGTGCTTTTCCGTCGCATGCCTCGTGGCCGTCAC
GGCCGGGTTGGGTCCCTCGGACGGGCCAGGAGGCTGGGGGGCGGGGCCGG
AGCCGGCGTCGTCACCACTGGGGCCAGGACCCGGGCCAGAGTCAGGGCCG
GGACCGGGACCGGGGCTGGGGCCGGGGCCGCGGCCATTGGTGGAGCCCGG
GTGCAGGTAATGGGAGACGGGGGATGCCGGAGGCCAGGTGGGGGCCGCCG
TCGCTGAGGAGTCCTGGCGCTGCGACGGTGCGCTGCTAGCGCCCCGGTCG
CGGAGCAGCGGGGCGGATCCCGAGGCGGCGAGGCCATGGTGGGTGGGGTG
GCTTGCGTGCTTTTCCGTCGCATGCCTCGTGGCCGTCACGGCCGGGTTGG
GTCCCTCGGACGGGCCAGGAGGCTGGGGGGCGGGGCCGGAGCCGGCGTCG
TCACCACTGGGGCCAGGACCCGGGCCAGAGTCAGGGCCGGGACCGGGACC
GGGGCTGGGGCCGGGGCCGCGGCCATTGGTGGAGCCCGGGTGCAGGTAAT
GGGAGACGGGGGATGCCGGAGGCCAGGTGGGGGCCGCCGTCGCTGAGGAG
TCCTGGCGCTGCGACGGTGCGCTGCTAG
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