mRNA_S-ischiensis_contig8.19797.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19797.1
Unique NamemRNA_S-ischiensis_contig8.19797.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:4087156..4087646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size212
Cds size210
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19797.1prot_S-ischiensis_contig8.19797.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 4087158..4087646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.8587494-CDS-S-ischiensis_contig8:4087157..40871981622817264.8587494-CDS-S-ischiensis_contig8:4087157..4087198Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 4087158..4087198 -
1695740980.0165937-CDS-S-ischiensis_contig8:4087157..40871981695740980.0165937-CDS-S-ischiensis_contig8:4087157..4087198Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 4087158..4087198 -
1622817264.8703573-CDS-S-ischiensis_contig8:4087303..40873771622817264.8703573-CDS-S-ischiensis_contig8:4087303..4087377Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 4087304..4087377 -
1695740980.0262392-CDS-S-ischiensis_contig8:4087303..40873771695740980.0262392-CDS-S-ischiensis_contig8:4087303..4087377Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 4087304..4087377 -
1622817264.8824694-CDS-S-ischiensis_contig8:4087551..40876461622817264.8824694-CDS-S-ischiensis_contig8:4087551..4087646Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 4087552..4087646 -
1695740980.0357006-CDS-S-ischiensis_contig8:4087551..40876461695740980.0357006-CDS-S-ischiensis_contig8:4087551..4087646Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 4087552..4087646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19797.1

>prot_S-ischiensis_contig8.19797.1 ID=prot_S-ischiensis_contig8.19797.1|Name=mRNA_S-ischiensis_contig8.19797.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=70bp
GGKSRPCHPNVREKIGRWTGTSTTRRRIQRLMHPLSGLGEPRPQKSSERG
GQSGPPGVSGVLNKLMGQRL
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mRNA from alignment at S-ischiensis_contig8:4087156..4087646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19797.1 ID=mRNA_S-ischiensis_contig8.19797.1|Name=mRNA_S-ischiensis_contig8.19797.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=491bp|location=Sequence derived from alignment at S-ischiensis_contig8:4087156..4087646- (Schizocladia ischiensis KU_0333)
GGGGGGAAGTCGAGACCATGTCATCCAAACGTAAGGGAGAAAATCGGCAG
GTGGACAGGCACGTCTACGACGCGCAGGAGGATACAGAGGCTGATGTAAG
TGGGGCTCGGGTAACCCAGAAAGTCACCTCAGCACACCTTAGCTGCCCGA
CGACCACCAGCTTGTTGTTACTCTCTCAACACGGGACGAAAACTGCGGCC
CGCCCCATCGACTGCGTTTATTTCCGTGGCCCAACCGCGGGAAACCGTCC
CCATCATGCGCTTTTGCAGGCATCCTCTGTCGGGACTTGGAGAGCCGCGC
CCGCAGAAGAGCTCCGAAAGAGGCGGACAATCAGGGCCGCCCGGTGAGAG
CATGCCCTTGGGCGTTCGAGAGATAGGCGCAGGCTCATGGATGTGTTCAC
TGCTCTGACTTTCATGGCCTTTGAATCGTTCCGCGACCGGGTGATCAGGC
GTTTCAGGGGTACTCAACAAGCTGATGGGCCAACGGCTGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:4087156..4087646-

>mRNA_S-ischiensis_contig8.19797.1 ID=mRNA_S-ischiensis_contig8.19797.1|Name=mRNA_S-ischiensis_contig8.19797.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=420bp|location=Sequence derived from alignment at S-ischiensis_contig8:4087156..4087646- (Schizocladia ischiensis KU_0333)
GGGGGGAAGTCGAGACCATGTCATCCAAACGTAAGGGAGAAAATCGGCAG
GTGGACAGGCACGTCTACGACGCGCAGGAGGATACAGAGGCTGATGGGGG
GAAGTCGAGACCATGTCATCCAAACGTAAGGGAGAAAATCGGCAGGTGGA
CAGGCACGTCTACGACGCGCAGGAGGATACAGAGGCTGATGCATCCTCTG
TCGGGACTTGGAGAGCCGCGCCCGCAGAAGAGCTCCGAAAGAGGCGGACA
ATCAGGGCCGCCCGGCATCCTCTGTCGGGACTTGGAGAGCCGCGCCCGCA
GAAGAGCTCCGAAAGAGGCGGACAATCAGGGCCGCCCGGCGTTTCAGGGG
TACTCAACAAGCTGATGGGCCAACGGCTGGCGTTTCAGGGGTACTCAACA
AGCTGATGGGCCAACGGCTG
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