mRNA_S-ischiensis_contig109.1948.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig109.1948.1
Unique NamemRNA_S-ischiensis_contig109.1948.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig109.1948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig109contigS-ischiensis_contig109:150618..155891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size742
Cds size426
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.8290646-UTR-S-ischiensis_contig109:150617..1507491622815573.8290646-UTR-S-ischiensis_contig109:150617..150749Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 150618..150749 +
1695739778.9022837-UTR-S-ischiensis_contig109:150617..1507491695739778.9022837-UTR-S-ischiensis_contig109:150617..150749Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 150618..150749 +
1622815573.891471-UTR-S-ischiensis_contig109:154426..1545521622815573.891471-UTR-S-ischiensis_contig109:154426..154552Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 154427..154552 +
1695739778.9603295-UTR-S-ischiensis_contig109:154426..1545521695739778.9603295-UTR-S-ischiensis_contig109:154426..154552Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 154427..154552 +
1622815573.900927-UTR-S-ischiensis_contig109:155833..1558911622815573.900927-UTR-S-ischiensis_contig109:155833..155891Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 155834..155891 +
1695739778.9731722-UTR-S-ischiensis_contig109:155833..1558911695739778.9731722-UTR-S-ischiensis_contig109:155833..155891Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 155834..155891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.847681-CDS-S-ischiensis_contig109:150749..1507931622815573.847681-CDS-S-ischiensis_contig109:150749..150793Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 150750..150793 +
1695739778.91061-CDS-S-ischiensis_contig109:150749..1507931695739778.91061-CDS-S-ischiensis_contig109:150749..150793Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 150750..150793 +
1622815573.8592522-CDS-S-ischiensis_contig109:152166..1523521622815573.8592522-CDS-S-ischiensis_contig109:152166..152352Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 152167..152352 +
1695739778.9292388-CDS-S-ischiensis_contig109:152166..1523521695739778.9292388-CDS-S-ischiensis_contig109:152166..152352Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 152167..152352 +
1622815573.8715703-CDS-S-ischiensis_contig109:152926..1530621622815573.8715703-CDS-S-ischiensis_contig109:152926..153062Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 152927..153062 +
1695739778.9404-CDS-S-ischiensis_contig109:152926..1530621695739778.9404-CDS-S-ischiensis_contig109:152926..153062Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 152927..153062 +
1622815573.881882-CDS-S-ischiensis_contig109:154366..1544261622815573.881882-CDS-S-ischiensis_contig109:154366..154426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 154367..154426 +
1695739778.9502745-CDS-S-ischiensis_contig109:154366..1544261695739778.9502745-CDS-S-ischiensis_contig109:154366..154426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 154367..154426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig109.1948.1prot_S-ischiensis_contig109.1948.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig109 150750..154426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig109.1948.1

>prot_S-ischiensis_contig109.1948.1 ID=prot_S-ischiensis_contig109.1948.1|Name=mRNA_S-ischiensis_contig109.1948.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=142bp
MGGHLHILTWARANGAPWDSRMCTSAGVRGSMPILDWAREDGAGATNGGQ
ATWDNRTTFNLAANGNLQELYLTRTKGCPWDATTCAAAAAGGHLVMLRWL
RSNNCEGDKTTCAAAAAHGHLEVLKFCRSTDQPNEGQQPCP*
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mRNA from alignment at S-ischiensis_contig109:150618..155891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig109.1948.1 ID=mRNA_S-ischiensis_contig109.1948.1|Name=mRNA_S-ischiensis_contig109.1948.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5274bp|location=Sequence derived from alignment at S-ischiensis_contig109:150618..155891+ (Schizocladia ischiensis KU_0333)
GGGGGAGGAGGAGCCGTGCCTGTGGGACGCGAAGACGTGCGCGAGGGCCG
CGCTGGGGGGGCACCTCGAGGTGCTGCGCTGGGCGCGGGAGAACGAGGTC
CCTGGGATGAGAGCACGTGCGCGTCAGCGGCCATGGGGGGACACCTGCAC
ATCCTGACGTGGGCGCGGGCGAATGGGTGGGTGGCCAAAGAGCGAGCAAG
CAGCCAGCGGGCTGTGTGCTGTTTTTTTGCGTATGTGCAGCATCGATTCA
TCATTCTTTCTTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCC
TCGTCCTCCTCCTCCTTCTTCTTCTTCTTCTTTGTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCGTTGTGCACACCTCCTCCACTGAGT
TACAGAGCTCGGCCGCGTGCCGGATTTCTTGCTTTGGCCGGATCCTCTAT
TGTTTGACACCCGCTCCCCCCGAGAGGCGTTGGTGTGTAGGTGGCAGAGG
AGCGGTGAAAGAGCCGTGTGCTATATCTGAAGATTTTCCCCCAGTCAGTT
GGCTGACCCGAACTGTTTGGATCAATGAACCCGACTGGCCGACCGACGGA
CCGACCAACACGCACCTCTCGACCAGTCACGCCGACCGACTCACCCTCTC
CAACGATATCTTTGCTCCACCCAGGCTTGTCGGCCAATCGCCTAAAGCGA
CACAACCATCTCGTCCAATTGCCATGCTCGACCCGGTCTCTCAGCCAATT
GCCTTGACTGACACAGTCGATCGTCCAATTGCCCTGCTCCACCCAGTCTC
TCCGCACGATCTCTCGGCCAGTCGCGCCTCGACCGTAGCAATCGTTTCGT
CCAGTGGGTTTGCTCCACCCATTCTTGTAGGCCAATCGCCCCGACTGACA
CATTCGTTTCGTCCAATCATCAATCAGCTCGTGAGTTAGCCTCGGCCTCC
CCTCCCGTGGGTCCCAGCTCACCATGTAGAAGTACATATCCTACAGATCA
TGGAAACATTTTCGACGTTGCCTGTGGTGGCAAAAATAAGGGAGAGCCTG
GCCGCCGCCGCCACCGCCGCCGCCACGGCCCGCCTTCCCAACAACAGAAG
AAACCCACTGCAGGTGCTCTGGCCCGTATAGGGTCACACTCACTCCCTGG
GCGCGCCCCAGTCCATTGGTCAATGGATACTCGTGCGCTGCGGCAAGCAG
CTCGTGAGACCCCCCCCCCGCGCCAGATGAAAATCTTCAATTGATGTGAT
GTCATACATGCTTGGAAGCATGTCATGTACTGAACTAAACACTGTACTCT
AGTTTGGCATCTCATCGCATCGCTGGGGGGCGGGAGGGAGAATGCTCCGT
TGTCAATGGCGCGCGGTCAATGGTCTCGGGACTACGGCAAGTATTGTTAG
GTGTGAGAACATGGTATATATACACAACATCATTCGGCTGTGGCAAGCAG
CTCATGAGTACCCACCCCCCCGCCCGCCCGCCCCGTGCCCGGACCCCAGG
GCGCCTTGGGACAGCAGGATGTGCACGTCGGCCGGCGTGCGGGGCAGCAT
GCCCATCCTGGACTGGGCTAGGGAGGATGGAGCTGGTGCGACCAACGGCG
GCCAGGCGACCTGGGACAATCGCACCACGTTCAACCTGGCCGCGAACGGC
AATCTCCAGGAGCTCTACCTGACACGGACAAAAGGGTGAGTAGCCACCAG
GGTGTTTGTTGAACAGTACTGCGTTGTACTTGCCTGCGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGCGTGGTCCATGGCCTGGGGACTACTACTGTAGGT
ATGTAGCTGCGGCAAGCACGGCGTGAGCGCATGCATGCATGCATGCACGC
ACGTGTGTATGTGTGTGTGTGTGTGGAAAACGGGGACCTTCAGGAGCTCT
GCTTGCGGGCCCCGCCGCAAGAATACCTGTGTGAGGTGTCCGTTACTTGT
TTGGCACGGTGTGTAGTTTCGTCGTGCGTGTGCCTAGTGTGTGTGCGTGG
GTGTGTGTGCACGCGCACGTGTTGTGTGAGTGGGCTTGCGCGTGCTATGC
GTGCGTGTCGTCATGCTCTCGCCCTCTGCTGTAACTCTCCGTGTCGCTCC
CCCTCCCTCCCTCCCTCCCCCCCCCTCCCTTCCTCCCTCTCTCAATGCGG
CTCTTTGTGCAGCACCACACCACCTCGTGCAACCGTTGACCGCCCCAACA
CACGTGTAGCCATGCACGCCATCCATCCCTGGCCACGCACGCCTGCCATT
CCCACTCAGGTGTCCCTGGGACGCTACCACCTGCGCCGCCGCCGCCGCGG
GAGGCCACCTGGTCATGCTCCGGTGGCTGCGGTCCAACAATTGCGAGGGG
GACAAGACCACGTGTGCGGCCGCCGCGGCGCACGGCCACCTGGAGGTGAG
CCATAGAGGACTTAAAAACGACGGTAGATGACTGTGCTGTAGTGTAGTGT
ACTGTACTGTATTAACCCACCTGGAGGTGAGCGAGGTTGAAGCCCTAGAG
GAGTTAAACGACCGTAAACGACTGTGCTGTAGTGTGGTGTAGTGTGCTGT
ACTGTATTTCCCGGAAGAACACGGGGCGAGGTACATGCAACGTCTCCAAA
GACCTCAGCAGTGGCCATGATCTGATGTGATGTGATGTGGTTTGTACTCT
CATAGATCAGTCAGTAGTTTGACGTCACCTCACATCAAACCACGTCACTA
AAGACCTCATCGGCGGCCCTTCGTTAGCTCTGCATTGTATTGTACTGTAC
TCGCCGTGTGCTGTACTGAAGTGCATGGCGGTTCCTCACTAAGTACGCTG
TTGACGTCTCCAGCGATGCGGCCTTCGATGCCATGTGTGTGGGATGTGTA
TCTAGTCTAATGCACTGTAGTGTTGACATCACGTCACATTGCATCGCATC
CAATCTGGAACCTCACCACAGAACTTCAATGCGCCTCGCCGTGTGTTGTT
CCTGTTGATGCTTACTTGAGAGTCCGTAGTTTGGTTTGCCGTCACACCTA
GCAGAGGCCCCGTGGCTCATTGCTGAAAGCCTGTAGTTCAGCGTGCCGTC
ACACGAGCAGAGGCCCCGTGGCTCTTCACTAAAAGCCTGTAATCCAGCGT
GCCGTCACACCTAGCAGAGGCCTTGTAGCTCCTTGCTACTTAAAAGCCCA
TAGTCCGGCGTGCCGTCGCACCTAGCTGAGGCCCTGTAGCCCCTTGCTAC
TTAAAAGCCTGTAGTTGGGTGTACCGTCACACCTAGCTCCTCACTACTGT
ACTGTAATGTACTGCACTGTATGAGCCCAGTGTGGTTGGTTGGACCGTCA
CGCCCACAGCACCAGACCATTTACCACCACCACACGCCTCCTCGACTGAG
GCAGGGCAGGCACTCACAGCCTGTTTGCCAACCAAATGGACTGCGGAGAC
ACCAGCACAACACTACCGCGTGTGTGGAGTACGGTAGTGCTACTATACTG
TAGTACGAGCAATACAGTGGTTGGAATCTTGTCGACCGCCGCACCAGTAG
CCGACAAGGCCGCTCACTCACGCTCGGTGTGATTTGGACATCCGGCGGCT
CTGTGAGGTGTGTCAAACAGCTTTACTGTACTCTGCTCCATGTGCGCGTC
AACCCGTGCTACTCTATAGTCTACAGCAAACACTCACCACGCTTTGGCCG
CCCGTCACACAACCACCCCCCGCCCCGGGGGACGTTCGTTCGCAGTCAGG
TTCTCAAGTTCTGCAGGAGCACAGACCAGCCCAATGAGGGGCAGCAACCG
TGCCCCTGAGACGCCTCCACGTGCGCGAGGGCGGCCGGCGCGGGCCACAT
GGACATCCTCATGTGGGCCAAGGAGAACGGCTGCCCCTGGGACGCCACCG
TGTGCGCTGCCCTGGCCCTGGATGGGAACCTCGAGGTGCGGCCCTGCTGC
CCCTTTCCAGTACGATGCATGCCTTGCCAAAACATAGAGGCCCGAAATGA
GACGGGGAGGGGAGGGGGGGGGGGGGGGGGGCCGGGGGACTCAAAGTCTG
TCCTGGGGACTCAAAGTCTGTCCTGGGGACTCAGGCAAGCAACACGCACT
TGTTTGCTACCATATGGTGTGGGAGCATGAGGCATCATATGAGCTGCTGC
GACAGGTCCCCCATATGACATGGAGCTGTAAAGTACCCACCAAAACATCA
TATGAGGTGTGGCTAACCGAACTGTACATATCATTCCATAAGAAAGTCAA
GGTCTCACCGAAACATATTCGAGGCACGTCCAGTAAACCAGCAATCCAAG
AACCACCCATTGAACCCCAATTCATCTGAGGGAAAAGCTGCGCAAAAATG
GGGCAAATCTCAGTATCTCACCAAAATGTACATGCTGTGGACAAATTCCC
AGCTCACGGCTCCAAAAGCAAATTGAGGACGCATTGCAACATGTTTCGAG
ACACAACAATTATCTGTGGAACCCCAACCCGTCTTACGGCAGCTCTGCAC
CCAAATGCATAATGTGGGGTGCATACTACATGAATTTATTCACCTACTTG
CATAGATGTGTAAAAGACTCTCATGGTTGAACAAGAGAAGGTGATCCACT
GAACCATTTCAAGGCACGCTAACTCAAACCACCAACCCATGAAAGGCCCA
TGGAACCCCAACCCGCACTACGGAATCTGTAGGTATTGCAGCGCAGTCGC
GGTAAACATCATGCAATTTGCAGCAGCGAACCACTTGTAGACATATGAAA
CAATAGTCCCGCAGGTTCCACACGAAAATGGAGTACCATCTGCACACGGT
CCGAGATTGGTCTACTCAACCGCCAATACGTAAATCATTCGAAGCTGCTC
CATGCAACGCCAATTGCGGCACTGAGCGGGGATTTGTGGAACTCGACCGC
CCAAGAAGAACTGCGAAGCAGCAATTCCCAGGTGTGGTAGGCGATTGATG
GAGTTTGAGTCTCTCATTGCTTCAGCCAAAGCATTGATTCAATATTCGTT
TATGGACCTTGCTCAAGATAAAACCAGACGGGTGAATTTGGAACAGCTGC
TGACTCCGAAGACAGGATGAGGTTGTGTTCTTTGTCCCTGCATGCAATGG
CTTGTCACAGCTTGGAAGCGTTCTACGTACGGCTCGTCATTCGAAGTGTC
CCTACACTCTGTGAACTATTCAATCAGACATGAAATGGTCTCCTACGCAT
ACATCCCCGGCGGCAGCTGGGCAGTGGAATCCTGGGCCGCGAACTTGGCA
AAGCAGGGAATCTGCCGAACATGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig109:150618..155891+

>mRNA_S-ischiensis_contig109.1948.1 ID=mRNA_S-ischiensis_contig109.1948.1|Name=mRNA_S-ischiensis_contig109.1948.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=852bp|location=Sequence derived from alignment at S-ischiensis_contig109:150618..155891+ (Schizocladia ischiensis KU_0333)
ATGGGGGGACACCTGCACATCCTGACGTGGGCGCGGGCGAATGGATGGGG
GGACACCTGCACATCCTGACGTGGGCGCGGGCGAATGGGGCGCCTTGGGA
CAGCAGGATGTGCACGTCGGCCGGCGTGCGGGGCAGCATGCCCATCCTGG
ACTGGGCTAGGGAGGATGGAGCTGGTGCGACCAACGGCGGCCAGGCGACC
TGGGACAATCGCACCACGTTCAACCTGGCCGCGAACGGCAATCTCCAGGA
GCTCTACCTGACACGGACAAAAGGGGCGCCTTGGGACAGCAGGATGTGCA
CGTCGGCCGGCGTGCGGGGCAGCATGCCCATCCTGGACTGGGCTAGGGAG
GATGGAGCTGGTGCGACCAACGGCGGCCAGGCGACCTGGGACAATCGCAC
CACGTTCAACCTGGCCGCGAACGGCAATCTCCAGGAGCTCTACCTGACAC
GGACAAAAGGGTGTCCCTGGGACGCTACCACCTGCGCCGCCGCCGCCGCG
GGAGGCCACCTGGTCATGCTCCGGTGGCTGCGGTCCAACAATTGCGAGGG
GGACAAGACCACGTGTGCGGCCGCCGCGGCGCACGGCCACCTGGAGGTGT
CCCTGGGACGCTACCACCTGCGCCGCCGCCGCCGCGGGAGGCCACCTGGT
CATGCTCCGGTGGCTGCGGTCCAACAATTGCGAGGGGGACAAGACCACGT
GTGCGGCCGCCGCGGCGCACGGCCACCTGGAGGTTCTCAAGTTCTGCAGG
AGCACAGACCAGCCCAATGAGGGGCAGCAACCGTGCCCCTGAGTTCTCAA
GTTCTGCAGGAGCACAGACCAGCCCAATGAGGGGCAGCAACCGTGCCCCT
GA
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