mRNA_S-ischiensis_contig109.1940.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig109.1940.1
Unique NamemRNA_S-ischiensis_contig109.1940.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig109.1940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig109contigS-ischiensis_contig109:74498..78651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size686
Cds size657
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig109.1940.1prot_S-ischiensis_contig109.1940.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig109 74526..78651 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.7451372-UTR-S-ischiensis_contig109:74497..745251622815573.7451372-UTR-S-ischiensis_contig109:74497..74525Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 74498..74525 +
1695739778.865922-UTR-S-ischiensis_contig109:74497..745251695739778.865922-UTR-S-ischiensis_contig109:74497..74525Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 74498..74525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.7615893-CDS-S-ischiensis_contig109:74525..745821622815573.7615893-CDS-S-ischiensis_contig109:74525..74582Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 74526..74582 +
1695739778.8737404-CDS-S-ischiensis_contig109:74525..745821695739778.8737404-CDS-S-ischiensis_contig109:74525..74582Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 74526..74582 +
1622815573.7767391-CDS-S-ischiensis_contig109:76374..765121622815573.7767391-CDS-S-ischiensis_contig109:76374..76512Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 76375..76512 +
1695739778.8826547-CDS-S-ischiensis_contig109:76374..765121695739778.8826547-CDS-S-ischiensis_contig109:76374..76512Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 76375..76512 +
1622815573.788263-CDS-S-ischiensis_contig109:78189..786511622815573.788263-CDS-S-ischiensis_contig109:78189..78651Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 78190..78651 +
1695739778.8940017-CDS-S-ischiensis_contig109:78189..786511695739778.8940017-CDS-S-ischiensis_contig109:78189..78651Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 78190..78651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig109.1940.1

>prot_S-ischiensis_contig109.1940.1 ID=prot_S-ischiensis_contig109.1940.1|Name=mRNA_S-ischiensis_contig109.1940.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=219bp
MTGWRCVSLLRDGLRVCCKATGKNVGSCTMGRKQGKQILCECCQGHFSAA
QWAQHCGNKLHRPYASITLADTGETLNDAIEREKAGHGSDATAAAAAAAS
NPGARTAPRESHHHDNDTRSSHDSYGLGHRGGGPSRPGSDRARSGRSHGR
DGQHDHGGSSHSDPQQPDAGHGTGPAGGGGQWQAGGGSGSGTSGSGSDDS
DDENDGDGDGGYLTRRPSA
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mRNA from alignment at S-ischiensis_contig109:74498..78651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig109.1940.1 ID=mRNA_S-ischiensis_contig109.1940.1|Name=mRNA_S-ischiensis_contig109.1940.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4154bp|location=Sequence derived from alignment at S-ischiensis_contig109:74498..78651+ (Schizocladia ischiensis KU_0333)
GGCAGGGGGCGGGGGTGGTGGAGGCACGATGACTGGCTGGCGTTGTGTTT
CGCTTCTGCGGGACGGGCTGCGCGTCTGCTGCAAGGTGGGCCAATTGTAG
TACTTCGAAGTAATTGTGTACTCGTAGAGTACGTGTGTGTGTATGTGTGC
GCGCGTGCGTGTGTGCGTGCATGTGTGTGTGTGGGTGAGCGTGCGCATAC
ATGTGCGCACGCGTGTGTGGGGGTTCACGTGCTCGTAGTGCCGCTCGCCG
AACGCCTCCAGGCACTCCCAAGACGTGTGTACGGTGACTTACGGGGCGAC
ACACGTGCCCCCTGTGCTTTTGCCGGAGCGCGCACACTTGTGCCTGTCCT
TGGTGCGTGAACAAGGCGGGCCCGAGTGTGACTTCGGACGCGCACCATCC
TCCCCGTTGCCTTGATTCCCTTCATGTTGCCTTGCAAGTTGCCCATCTGC
ATGCACCGCCACGTGCAGTATTAACAGGCACAACACAGGGCGAGGTGCAG
GCCACGTCACTGCAGACCTCAGCAGTGGCCCTCCTTGTAGCTCGGCAGGG
GAAGTTGGTGTGGGGAAGGGGAGAAGAGGAGGAGTACAATACTGCGCGCT
GTGCGCTTTCATTTCGGAGTGGGCTTTGCTTTCTTTCCCAAAAGTGCGCA
CATGCCAAGTAGTTGTGAGTACTGCACTCCATACAGCAGTGGGCTGGGAA
GCGCTCGATCACAGTGCAGTAGGATACAGGCAGTACCTATACTCTAAGGT
GTTGTTAACCCTTGTTGTAGAGAGGACACGCGTACTGTACCTGCTCCTGT
AGTACTCCGATGTGTACATGTATTCACTCCCGTTGTGCTTGCCGTAGCCC
GGAGACCGTTGAGGTCCATGGCAGCATTAGTGCGGGCACAGTAAGATTGG
AAGAGCTGCCGTCAACGCATGCAGTACAGAACACGTCAACGGTCTACACC
GTGCATGTGCTTGGCTACGTTGCTGAGTTGGTACACACTGCGCAGTGAGT
TTCCTTGCAACATGCATGTATGAGTAGTCGTACAGTACGAGTACTTGTGC
ACGTGTGAGAATGTTCACCATAGCCAAGCTGTTTTTTGGTCTTGAATATG
TTACCAGTACTGTAGTGCAGTTAGTTCTAGCGGTGTTCTACGCGAGGTGG
GGGGGCAAATCATCCGGTTCCTTACATGCCACCGCTTCGGCTTTCCAGCT
CTAGCTCGAGAAGAAATGCGAAATTGGTGCATTAAAATTTGTACGTTGTC
TGGTCTTACCGTCGTGCACACTTTGGCAATTTGTCGTGCTGCGGTTCAAA
GTGGTTCCCGAGAACTGGGTGAGCGGCGGCCGCCACTCATGTAAGGTTCC
CACCCCCGGCCTCGCATAGAACGCCTCCTACTACAGTGGTAGAGTAGTCT
TTGATATTGCCCACTGGCGCTTGTGACTTAACACTTTGCCTGATGGTAGT
ATTTGTGGTAGATCGTACCTTGGAAGTACTTCCAGGTACTTCCAGCAGGA
GGGCAAGCCCGAGGTTTGGTGTTGGGCTGTCATCTATGCACCAACAGCAC
TGTTGGAAGACAATCAACGAGTACGCTACTTCGAAGTACATGGATAAGTA
GGTCGACACGCGTGGTCCATGGTCTCAGGACTACGTCAAGCACAGCGTAA
GTACACACACACACAGTCAAAGATATGAGTATATACATGCAGGCCGTCAC
CTCAGTGTGTGGCTTCGTACAAGTAGCAGTACTGTAGTGCTCCTGCACAG
CAGCCTGACCCGCACCCATTGTATTCCGCTCATGGGTCAAGCCTGCCCCA
CTTCTCTTCCCTCTCACAAGTCATGACTGCCGCGTCTGACTTTTGGCACG
TCCCTTCTGTCCTCGACTGCAACTTAGGCCACTGGTAAAAACGTTGGCAG
CTGCACCATGGGCCGCAAGCAGGGCAAACAAATCCTGTGCGAGTGCTGCC
AGGGGCACTTCTCTGCTGCACAGTGGGCGCAGCACTGCGGGAACAAGCTG
CACCGCCCCTACGCTGTGAGTTTTTTCCCAATGCATTCTCCTACTCCGTA
CCGTACAGTAGTAGTGCAGCAACAAGTAGAGGACAGTACAGTACAGTGTA
CTCGTGCTGCTGTACTTTGCATGTGCATTCGTTGCTCCGTCTCGCACGAG
GCGCAGGGTCAATGGTCTCAGGACTACGGCAAGCACCACGTGAGTATTTA
TTAGTTGATACTGCCTGCAAGGCGAACGAGGCGTCACTAGTTAGTACGAG
TACTCGAGTAATATGGTGTGAAATACTACTACGTAGCGAGTCAAATTACT
TGTACTGCTGCGCAGTACGGCGCCTGCCTGAACATTGTACATTACTTCAT
CAATGGTCTCGGGAATGCGGCAAGCACAAGGTTGTACAGTGCATATATAC
TTCCAAGTACTTCTAGTTAGTAGCAGAGCAAAACACTGTATTTGCAAATG
TGTTGCTTATAGTAGATGCACATAGATACTTCAAGTGCATGTATATATTG
GCTGATGACACCTGTTAAGCTGAGCCAGACTGCCATTACTAAAGTGTAGT
CCTGTGCTTGCCGTAACGTCGGGCATTGGCGTGCAAGTGCCGTTCCGAGT
TATGGCAAAACCTGGTTTGACCAGTGCGATCATCAGGAACAGTAAATGGT
TTGGAGGCCATCGCCGCCTGTAGAGTCTCAACAGGGAAGACACAGGATGA
GGTGCAGGCCACGTCCCTACAGACCTCAGCAGCTGTAGAGCAATCTGGTG
TACTTCTGAAGTAATTGACAAGCGCTTCCAAGTGTACCAGAGCACCTCCA
GTAAATAGAGTAGTAGTACAAGTAGTAGCCTCTCCGCAGGCAAATGGGGT
TCAACTCATAAACCATTTCCAAGTCGTTGAAGCACCTGCTGTTCGTAGAT
ACTGTACTGTACAGAGACGTGTTGTAGAGTGCTGCTCTCCTCTTGCCCCT
CCCATCCCTTACACTCTCCTTTCCTGGCGAGCTGCAGGTCAGGAAGGGCC
ACTGTTAAGGTCTTTTACGTCGTGGCCCGCACCCCGCTCTGTGTTGTGTG
TATCCTGTAGCACTGTAGGTGTGCTGTACTGCTGTTGGCAGCGCCCGCCT
AAATACTGTACTCATACTTGCTGAGTACAAGTAGTAGTGGCAGCCTGTAC
TTGCATATGCACTAGCTGATAGTGCCCGTTGAGTGTGGCTTGATCAGTAA
ACTACAGTACTTCGGAGGCGTTTTACGCGAAGGGGGGGAGGCAAATCACG
CGGTTCCTTGCAAGCAAACCGGTGGCCACCGGTTTGGCACTCCATCTCCA
ACTCGAAAAATGCGAACTGGCGCGTGGCAATTTGTACATCGCCTGGTGTT
ACCCTCGTGGACATGGTGGTAAAGTTTCATGCGGCGGTTCGAAGTGGTTC
CCTGAGAACCTGCTAACCGGTGGCCACCTCTTTGATGCAAGGTGCCCACC
CCCCCCCCTCACGTAGAATGCCTCTACAGTGGAGTACTTGTACTACTCGT
ACAGGAACAGTGCTATTATACATAGTAGTGCCAAGTGCCGTAGGCGTGGC
CGCTCCCACGTATTTCCTACCGCTGTGGCGGTGCCGCGACGAGCAAACTG
CGACAGTTGTTTGACAGTTCTGTGCCTGTCACTCTGTACTCCATCACTCA
CATGCTGTCCTGTACCGTGCTGACCGCTGTGCGTGCGCCCAGTCCATCAC
GCTGGCGGACACTGGGGAGACTCTGAACGATGCCATTGAGAGAGAGAAGG
CCGGCCACGGCTCCGACGCCACCGCCGCCGCCGCCGCTGCCGCCAGCAAC
CCTGGCGCCCGCACTGCGCCTCGCGAGAGTCACCACCACGACAATGACAC
CCGGAGCAGCCATGACAGTTACGGACTCGGACACCGTGGTGGCGGCCCGA
GCCGCCCGGGCAGTGACCGTGCCAGATCAGGGCGAAGCCACGGCCGCGAC
GGCCAGCACGACCATGGCGGATCATCACACAGTGACCCTCAACAGCCCGA
TGCTGGTCACGGGACCGGCCCAGCCGGCGGAGGTGGTCAGTGGCAGGCTG
GCGGGGGAAGTGGTAGCGGTACTAGCGGTAGCGGCAGCGACGACTCGGAT
GATGAGAATGACGGCGACGGTGACGGTGGTTATCTGACCCGCAGGCCATC
TGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig109:74498..78651+

>mRNA_S-ischiensis_contig109.1940.1 ID=mRNA_S-ischiensis_contig109.1940.1|Name=mRNA_S-ischiensis_contig109.1940.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1314bp|location=Sequence derived from alignment at S-ischiensis_contig109:74498..78651+ (Schizocladia ischiensis KU_0333)
ATGACTGGCTGGCGTTGTGTTTCGCTTCTGCGGGACGGGCTGCGCGTCTG
CTGCAAGATGACTGGCTGGCGTTGTGTTTCGCTTCTGCGGGACGGGCTGC
GCGTCTGCTGCAAGGCCACTGGTAAAAACGTTGGCAGCTGCACCATGGGC
CGCAAGCAGGGCAAACAAATCCTGTGCGAGTGCTGCCAGGGGCACTTCTC
TGCTGCACAGTGGGCGCAGCACTGCGGGAACAAGCTGCACCGCCCCTACG
CTGCCACTGGTAAAAACGTTGGCAGCTGCACCATGGGCCGCAAGCAGGGC
AAACAAATCCTGTGCGAGTGCTGCCAGGGGCACTTCTCTGCTGCACAGTG
GGCGCAGCACTGCGGGAACAAGCTGCACCGCCCCTACGCTTCCATCACGC
TGGCGGACACTGGGGAGACTCTGAACGATGCCATTGAGAGAGAGAAGGCC
GGCCACGGCTCCGACGCCACCGCCGCCGCCGCCGCTGCCGCCAGCAACCC
TGGCGCCCGCACTGCGCCTCGCGAGAGTCACCACCACGACAATGACACCC
GGAGCAGCCATGACAGTTACGGACTCGGACACCGTGGTGGCGGCCCGAGC
CGCCCGGGCAGTGACCGTGCCAGATCAGGGCGAAGCCACGGCCGCGACGG
CCAGCACGACCATGGCGGATCATCACACAGTGACCCTCAACAGCCCGATG
CTGGTCACGGGACCGGCCCAGCCGGCGGAGGTGGTCAGTGGCAGGCTGGC
GGGGGAAGTGGTAGCGGTACTAGCGGTAGCGGCAGCGACGACTCGGATGA
TGAGAATGACGGCGACGGTGACGGTGGTTATCTGACCCGCAGGCCATCTG
CCTCCATCACGCTGGCGGACACTGGGGAGACTCTGAACGATGCCATTGAG
AGAGAGAAGGCCGGCCACGGCTCCGACGCCACCGCCGCCGCCGCCGCTGC
CGCCAGCAACCCTGGCGCCCGCACTGCGCCTCGCGAGAGTCACCACCACG
ACAATGACACCCGGAGCAGCCATGACAGTTACGGACTCGGACACCGTGGT
GGCGGCCCGAGCCGCCCGGGCAGTGACCGTGCCAGATCAGGGCGAAGCCA
CGGCCGCGACGGCCAGCACGACCATGGCGGATCATCACACAGTGACCCTC
AACAGCCCGATGCTGGTCACGGGACCGGCCCAGCCGGCGGAGGTGGTCAG
TGGCAGGCTGGCGGGGGAAGTGGTAGCGGTACTAGCGGTAGCGGCAGCGA
CGACTCGGATGATGAGAATGACGGCGACGGTGACGGTGGTTATCTGACCC
GCAGGCCATCTGCC
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