mRNA_S-ischiensis_contig8.19595.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19595.1 vs. uniprot
Match: A0A6H5L397_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L397_9PHAE) HSP 1 Score: 123 bits (309), Expect = 7.550e-26 Identity = 92/226 (40.71%), Postives = 124/226 (54.87%), Query Frame = 2
Query: 2 EVASLRTGPLATPGEKARAARILRDRLITLLQDAGDIRALRHSGGSGRGGTAAG------SDPDLRPARPSATWHKPRGRARAAELPRRGGGRGTGGMIDPGRRRXXXXXXXXXXXXXXXXXXXXXXXXXXXALFLDTGAGPREFWEAVSDGPRFADPAWNVDLQALEESMWRLALLVR------HQDRRRGIRLMRGELLRRVLDLRLYELVLLYLRTCLVWEGI 643
E++SL TGPL+TP EKARAAR+LRDRL+ LL++A D RH A G SD R + + + R RRG G TG + P R R LD+GAGPR+FWE V+ GPR + +WNVD++ALE+ +W LA+LVR H +R +G+ L R ELLRR LD+R++E++LLY+RT L+W+GI
Sbjct: 737 EISSLTTGPLSTPSEKARAARVLRDRLVPLLENAADAWG-RHRQPWQNMPRAVGRRAATESDTSRFQRRTTVSTRQQNNPHRL----RRGNGDETG-LSSPRRGRLCC---------------------------LDSGAGPRKFWETVA-GPRLVEASWNVDIKALEQQLWDLAMLVRGPDLRGHCERHQGLALNRCELLRRTLDVRVFEVLLLYMRTRLIWDGI 928
BLAST of mRNA_S-ischiensis_contig8.19595.1 vs. uniprot
Match: D7FQ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ57_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 7.310e-15 Identity = 73/187 (39.04%), Postives = 94/187 (50.27%), Query Frame = 2
Query: 5 VASLRTGPLATPGEKARAARILRDRLITLLQDAGDIRALRHSGGSGRGGTAAG------SDPDLRPARPSATWHKPRGRARAAELPRRGGGRGTGGMIDPGRRRXXXXXXXXXXXXXXXXXXXXXXXXXXXALFLDTGAGPREFWEAVSDGPRFADPAWNVDLQALEESMWRLALLVRHQDRRRGIR 547
++SL TGPL+T EKARAAR+LRDRL+ LL++A D RH A G SD R + + + R RRG G TG + PGR R LD+GAGPR+FWEAV+ GPR + +WNVD++ALE+ +W LA+LVR D RR R
Sbjct: 843 ISSLTTGPLSTTAEKARAARVLRDRLVPLLENAADAWG-RHRQPWQNTPRAVGRRAATESDKSRFQRRTTVSTRQKNNPHRL----RRGNGDETG-LSSPGRGRLCC---------------------------LDSGAGPRKFWEAVA-GPRLVEASWNVDIKALEQQLWDLAMLVRGPDLRRPSR 995
BLAST of mRNA_S-ischiensis_contig8.19595.1 vs. uniprot
Match: A0A836CC54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC54_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 4.260e-14 Identity = 83/242 (34.30%), Postives = 101/242 (41.74%), Query Frame = 2
Query: 5 VASLRTGPLATPGEKARAARILRDRLITLLQDAGDIRALRHSGGSGRGGTAAGSDPDLRPARPSATWHKPRGRARAAELPRRGGGRGTGGMIDPGRRRXXXXXXXXXXXXXXXXXXXXXXXXXXXALFLDTGAGPREFWEAVSDGPRFADPAWNVDLQALEESMWRLALLVRHQDRRRGIRLMRG----------------------------ELLRRVLDLRLYELVLLYLRTCLVWEGIG 646
VA+LR GP ATPGE+A AAR LR L +LL DA D+ R PR +LPR GG+G G A LDTGAGPR W+A+ G RFA AW+VDL LE +WRLALLVR Q G L++G RR+LD R++EL+LLY RT +V EG+G
Sbjct: 756 VAALRVGPRATPGERAHAARALRAPLASLLGDADDVWQERXXXXX--------------------XXXXPR-----VQLPR--GGQGHLGC-------------------------DACAGRLTAAALLDTGAGPRALWQALR-GERFAQGAWDVDLDRLEAHLWRLALLVRRQGAGDGAPLLQGGGSDLXXXXXXXXXXXXXXGNGLDLRRASAHRRLLDARVHELLLLYARTVIVNEGLG 944
BLAST of mRNA_S-ischiensis_contig8.19595.1 vs. uniprot
Match: A0A7S1XZU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZU6_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 7.520e-12 Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 2
Query: 386 FLDTGAGPREFWEAVSDGPRFADPAWNVDLQALEESMWRLALLVRHQDRRRGIRLMRGELLRRVLDLRLYELVLLYLRTCLVWEGI 643
FLD+GAGPREFW AV+ + ++ + LE+ MWRL LLVR Q+R +G+RL R E RR+LD RLYE L L LV+ +
Sbjct: 69 FLDSGAGPREFWMAVTPALKVG----SMSIVELEQQMWRLVLLVRCQEREKGLRLDRNEAQRRLLDFRLYEYALEMLLKFLVYNDV 150
BLAST of mRNA_S-ischiensis_contig8.19595.1 vs. uniprot
Match: A0A7S2SEX3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEX3_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.700e-11 Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 2
Query: 386 FLDTGAGPREFWEAVSDGPRFADP---AWNVDLQALEESMWRLALLVRHQDRRRGIRLMRGELLRRVLDLRLYELVLLYLRTCLVWE 637
F+DTGAGP+EFW+ ++ P+ D + LE MWRL LLVR QDR++G+RL R E R++LD+R+YEL+LLY+R LV E
Sbjct: 438 FIDTGAGPKEFWQNIN--PKKNDTFRGKGTPSAEKLEAHMWRLVLLVRCQDRKKGLRLARHESQRKLLDMRIYELLLLYMRQELVEE 522
BLAST of mRNA_S-ischiensis_contig8.19595.1 vs. uniprot
Match: A0A7R9UDJ3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDJ3_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 2.330e-11 Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 2
Query: 386 FLDTGAGPREFWEAVSDGPRFADPAWNVDLQALEESMWRLALLVRHQDRRRGIRLMRGELLRRVLDLRLYELVLLYLRTCLVWEGI 643
FLDTGAGPREFW A++ + + L LE+ MWRL LLVR QDR +G++L R E +RR+LD RL E VL+ L+ LV++ +
Sbjct: 901 FLDTGAGPREFWMAITPPLKIR----SFSLAELEQMMWRLVLLVRCQDREKGLKLFRAEAMRRLLDSRLAEYVLVMLQKSLVYKDL 982 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19595.1 >prot_S-ischiensis_contig8.19595.1 ID=prot_S-ischiensis_contig8.19595.1|Name=mRNA_S-ischiensis_contig8.19595.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=316bp MIDPGRRRRRALAGGHGGGGTGTAASAAGVGAAASALFLDTGAGPREFWEback to top mRNA from alignment at S-ischiensis_contig8:2398319..2401889+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19595.1 ID=mRNA_S-ischiensis_contig8.19595.1|Name=mRNA_S-ischiensis_contig8.19595.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3571bp|location=Sequence derived from alignment at S-ischiensis_contig8:2398319..2401889+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:2398319..2401889+ >mRNA_S-ischiensis_contig8.19595.1 ID=mRNA_S-ischiensis_contig8.19595.1|Name=mRNA_S-ischiensis_contig8.19595.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1896bp|location=Sequence derived from alignment at S-ischiensis_contig8:2398319..2401889+ (Schizocladia ischiensis KU_0333)back to top |