mRNA_S-ischiensis_contig109.1935.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig109.1935.1
Unique NamemRNA_S-ischiensis_contig109.1935.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig109.1935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig109contigS-ischiensis_contig109:61365..62656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size602
Cds size600
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig109.1935.1prot_S-ischiensis_contig109.1935.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig109 61365..62655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.5354643-CDS-S-ischiensis_contig109:61364..613881622815573.5354643-CDS-S-ischiensis_contig109:61364..61388Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 61365..61388 +
1695739778.7788978-CDS-S-ischiensis_contig109:61364..613881695739778.7788978-CDS-S-ischiensis_contig109:61364..61388Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 61365..61388 +
1622815573.5458293-CDS-S-ischiensis_contig109:61878..622541622815573.5458293-CDS-S-ischiensis_contig109:61878..62254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 61879..62254 +
1695739778.7876108-CDS-S-ischiensis_contig109:61878..622541695739778.7876108-CDS-S-ischiensis_contig109:61878..62254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 61879..62254 +
1622815573.5585315-CDS-S-ischiensis_contig109:62455..626551622815573.5585315-CDS-S-ischiensis_contig109:62455..62655Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 62456..62655 +
1695739778.7982197-CDS-S-ischiensis_contig109:62455..626551695739778.7982197-CDS-S-ischiensis_contig109:62455..62655Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 62456..62655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig109.1935.1

>prot_S-ischiensis_contig109.1935.1 ID=prot_S-ischiensis_contig109.1935.1|Name=mRNA_S-ischiensis_contig109.1935.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=200bp
NQDGQDEPAEEQPASDTGGSPDHARTGKHQHQHQDGDEGQDAASTTGRGG
PGAPHASPDKAASVSSVSGPAVAGGPSTSTATGAGGGGGGGGGRGGGGDA
ADPDTSPPGAVLVAESTGGVVHDGNDTDMPVGTGDGGAGASASRAVARQA
PQCGGSGGRESGGSKNRRSPRGDGAHGAAAGGGGGGGLRGDGRPAALDTG
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mRNA from alignment at S-ischiensis_contig109:61365..62656+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig109.1935.1 ID=mRNA_S-ischiensis_contig109.1935.1|Name=mRNA_S-ischiensis_contig109.1935.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1292bp|location=Sequence derived from alignment at S-ischiensis_contig109:61365..62656+ (Schizocladia ischiensis KU_0333)
AACCAAGATGGCCAAGACGAGCCGGTGGGTGACAGGCGTGACAGGCACTT
GTCATTGCTCTGCTCTTCAGTCCGGTACAGTTGTACAGTAGGTCTCATGC
CCTCACAGCGCCGTTTACGCAGTGGGTTGCTGCGCCAAGCAGGCTGTACT
ACAGTACTTGAGCTATGGCACGTACAGTAGTACTGTACATGTTGTAATGA
GTACAGTGTGTGCTTGTACTGTATATATTCGTATATATGTTCTCACGTGG
TGCTTGCCGTAGTCCCGAGACCATTGACCACGCGCCTCGGTCGAGACGTG
CTGGTACTGTACTCATACTATTTACCAGTGCTCGCACAAGGGCATGGCAG
ACCCCGAAAGTTGCACTTGGAAGTGTACAGTACACTGCAGCGCAGTACGG
TACGTTACCTACAGTCCGTAGCCCACTGTAAATAGCCCGCTCAGCTCTGC
CCGCCCCAACCGCTTCGCGAACGGTACTATTGGGTTCACTCTGCTGCGGT
TGAACTTTTAGCAGGCGGAGGAGCAACCTGCGAGTGACACCGGGGGCAGC
CCCGATCATGCCCGCACAGGGAAACATCAACATCAACACCAAGACGGAGA
CGAAGGCCAAGATGCAGCTAGCACAACAGGGCGAGGAGGGCCGGGAGCGC
CCCACGCCTCGCCGGACAAGGCCGCGTCGGTTTCGTCGGTTTCCGGGCCT
GCGGTGGCCGGCGGCCCTTCCACCAGTACCGCTACGGGCGCTGGCGGCGG
CGGCGGCGGCGGCGGCGGCCGTGGTGGTGGTGGTGATGCTGCCGACCCAG
ACACATCCCCCCCCGGCGCCGTACTTGTAGCCGAAAGCACGGGCGGCGTG
GTGCACGACGGCAACGACACGGACATGCCTGTGGGCACAGGTGACAGACG
TGATTCATATACATTGTAGCAACTCGCACGCCATCCAAGCAATGAAAAAA
AAATGTAACGAGGTACAGTCGCACGTGTGTGCGACTGAATGTTCTCGTAT
TAGTATTAATAGGAACAACACGGTACCTCGTATTAGTTGTTATCCCATTT
CAGAATTGAGTGTTCTTATATTGGTGATTATCGCATCGCAGGTGACGGAG
GTGCTGGCGCAAGCGCTTCCAGGGCTGTGGCCAGGCAGGCCCCCCAGTGC
GGCGGCAGCGGTGGCCGTGAGAGCGGGGGCAGCAAGAACAGGCGCAGCCC
CCGCGGCGACGGCGCTCACGGCGCCGCTGCTGGGGGTGGTGGGGGCGGGG
GCCTGCGTGGCGATGGGAGACCTGCCGCCTTGGATACCGGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig109:61365..62656+

>mRNA_S-ischiensis_contig109.1935.1 ID=mRNA_S-ischiensis_contig109.1935.1|Name=mRNA_S-ischiensis_contig109.1935.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1200bp|location=Sequence derived from alignment at S-ischiensis_contig109:61365..62656+ (Schizocladia ischiensis KU_0333)
AACCAAGATGGCCAAGACGAGCCGAACCAAGATGGCCAAGACGAGCCGGC
GGAGGAGCAACCTGCGAGTGACACCGGGGGCAGCCCCGATCATGCCCGCA
CAGGGAAACATCAACATCAACACCAAGACGGAGACGAAGGCCAAGATGCA
GCTAGCACAACAGGGCGAGGAGGGCCGGGAGCGCCCCACGCCTCGCCGGA
CAAGGCCGCGTCGGTTTCGTCGGTTTCCGGGCCTGCGGTGGCCGGCGGCC
CTTCCACCAGTACCGCTACGGGCGCTGGCGGCGGCGGCGGCGGCGGCGGC
GGCCGTGGTGGTGGTGGTGATGCTGCCGACCCAGACACATCCCCCCCCGG
CGCCGTACTTGTAGCCGAAAGCACGGGCGGCGTGGTGCACGACGGCAACG
ACACGGACATGCCTGTGGGCACAGGCGGAGGAGCAACCTGCGAGTGACAC
CGGGGGCAGCCCCGATCATGCCCGCACAGGGAAACATCAACATCAACACC
AAGACGGAGACGAAGGCCAAGATGCAGCTAGCACAACAGGGCGAGGAGGG
CCGGGAGCGCCCCACGCCTCGCCGGACAAGGCCGCGTCGGTTTCGTCGGT
TTCCGGGCCTGCGGTGGCCGGCGGCCCTTCCACCAGTACCGCTACGGGCG
CTGGCGGCGGCGGCGGCGGCGGCGGCGGCCGTGGTGGTGGTGGTGATGCT
GCCGACCCAGACACATCCCCCCCCGGCGCCGTACTTGTAGCCGAAAGCAC
GGGCGGCGTGGTGCACGACGGCAACGACACGGACATGCCTGTGGGCACAG
GTGACGGAGGTGCTGGCGCAAGCGCTTCCAGGGCTGTGGCCAGGCAGGCC
CCCCAGTGCGGCGGCAGCGGTGGCCGTGAGAGCGGGGGCAGCAAGAACAG
GCGCAGCCCCCGCGGCGACGGCGCTCACGGCGCCGCTGCTGGGGGTGGTG
GGGGCGGGGGCCTGCGTGGCGATGGGAGACCTGCCGCCTTGGATACCGGT
GTGACGGAGGTGCTGGCGCAAGCGCTTCCAGGGCTGTGGCCAGGCAGGCC
CCCCAGTGCGGCGGCAGCGGTGGCCGTGAGAGCGGGGGCAGCAAGAACAG
GCGCAGCCCCCGCGGCGACGGCGCTCACGGCGCCGCTGCTGGGGGTGGTG
GGGGCGGGGGCCTGCGTGGCGATGGGAGACCTGCCGCCTTGGATACCGGT
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