mRNA_S-ischiensis_contig109.1933.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig109.1933.1
Unique NamemRNA_S-ischiensis_contig109.1933.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig109.1933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig109contigS-ischiensis_contig109:56547..60033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size894
Cds size867
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig109.1933.1prot_S-ischiensis_contig109.1933.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig109 56573..60033 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.480835-UTR-S-ischiensis_contig109:56546..565721622815573.480835-UTR-S-ischiensis_contig109:56546..56572Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 56547..56572 +
1695739778.7483916-UTR-S-ischiensis_contig109:56546..565721695739778.7483916-UTR-S-ischiensis_contig109:56546..56572Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 56547..56572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.4909897-CDS-S-ischiensis_contig109:56572..569971622815573.4909897-CDS-S-ischiensis_contig109:56572..56997Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 56573..56997 +
1695739778.7625234-CDS-S-ischiensis_contig109:56572..569971695739778.7625234-CDS-S-ischiensis_contig109:56572..56997Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 56573..56997 +
1622815573.504504-CDS-S-ischiensis_contig109:59591..600331622815573.504504-CDS-S-ischiensis_contig109:59591..60033Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 59592..60033 +
1695739778.7708402-CDS-S-ischiensis_contig109:59591..600331695739778.7708402-CDS-S-ischiensis_contig109:59591..60033Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 59592..60033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig109.1933.1

>prot_S-ischiensis_contig109.1933.1 ID=prot_S-ischiensis_contig109.1933.1|Name=mRNA_S-ischiensis_contig109.1933.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=289bp
MGNQASMGPGEAETQLGEPGDSDEGLLPRSRRGREAQGLLPPPATVVAPP
DFPDHLGVGAARGAAGGEGGGARGSGSVGVAPREGVARVPPYPYGLPSLG
YAADRPPPGPAVEAHGTSYGYGYHCAPTDYGYRPGSACRAQGGVVHSEGP
ALAAPTPHAQHLPLPPLADTRAAAPSPSIPTWMAAAGASVRPFQVPGWDL
FSGHAGAHAQEHDSRHQHQQHQHPWPSAHSVPHGDLRGGPPPMEAEHPPA
RERQRYPVGRYAQGAPPGHVGHEREVDGGVFGHFRGQRG
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mRNA from alignment at S-ischiensis_contig109:56547..60033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig109.1933.1 ID=mRNA_S-ischiensis_contig109.1933.1|Name=mRNA_S-ischiensis_contig109.1933.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3487bp|location=Sequence derived from alignment at S-ischiensis_contig109:56547..60033+ (Schizocladia ischiensis KU_0333)
GCGGGAGCGGCGGGGGTGTCGTGGGAATGGGCAACCAAGCATCCATGGGC
CCTGGAGAAGCCGAAACACAGCTTGGCGAGCCTGGGGACTCAGATGAAGG
CCTTCTTCCCCGGAGCAGGCGCGGTCGGGAGGCGCAGGGCCTGCTGCCCC
CCCCAGCGACAGTCGTAGCGCCGCCCGATTTCCCGGACCATCTAGGAGTA
GGGGCGGCGCGAGGCGCTGCGGGAGGAGAGGGAGGAGGCGCGAGGGGGTC
CGGTAGCGTGGGAGTGGCCCCGCGAGAGGGGGTGGCCCGGGTGCCGCCCT
ATCCATATGGGCTGCCAAGTCTAGGGTACGCGGCAGATAGGCCCCCTCCC
GGGCCGGCGGTGGAGGCGCATGGCACGAGCTACGGATACGGCTATCACTG
TGCCCCCACGGACTACGGCTACCGACCTGGGTCCGCATGTAGGGCGCAAG
GGTGAGCCTCGTATGTGCAACGCCGTATTTGCCGCCAGCCTCGCTATGGA
TACACTCCGCAAGGCAAATTTGGATTATTGGGCCAACATCCAAGATCTGC
ACTTGGTACAGAGTAACCCGCCACCGCCCGTTGCCTGCTTTCTCCCCCCC
CCCAAGCGCCAGCGGGGGGTGACAGGGTGCAAAATAGTCACTAGTTGTTT
ATCACACGTTCGCACATACGGGTACCTGCACGCCTGGCCCAAGGTGATGC
TGCCCGCCCGGGCCAGGCCTCCAAAAGGCAAATTTTACGTTAATCGCGAG
CAAAAACCGGGCTGAAAAGTGCTAAGTAGTGAATGGCGACTTCACCTCCG
AGCACGGATTTGGCCTGGTGGCACCCTCGGGAGATGGCGGGAGAAACGGC
TGCTCAATCCAAGTACTCGGGGAATATAAAGACCTCGTGTAGTTTATCAT
AGATGGTCGATTACTCAAGTGCTATGACTCGGGGAATATGAAGACCTCAT
GTATTACTATAGTAGTTTATCCTAGAGGGTCGATGGCTCAAGTGCCATGA
ATAGGCACAACGTGCGGAGGAGACAATGTACAGTACGTGAATCGTGACAT
GTGTCGTAGCGACCCCCCCCCCTGCCGCCCGCATTCGTGTTGGCCTCGTC
AGAACGTGTGGATATGCCTATATATATCATGAAAAGTACTTCGAAGTAGT
AGTTAGTGATGCTGCCTCCTCCACAAACAAGCCATGTGACATGCGCAGGC
GATGCCCAGGGTTGCTGGCACTGATTTTTTCCGCACAAGACGGCTATGTA
GGAAAGATCCAGCCTCAAGGTCTTGGCAGCAAGTGCTTTGTCCGCAGCAG
ACGCTTTGTCGCTCTGTGTGGGTTTGTGTGTGCTGGTGGTCCCGGCAGCG
GTCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GACGAGACGAGATGGAGGTACAGTATCATTGTGACGTTTGAGAGGTGTGC
GTCTCTGTGCACAGGTGCCTGATGTACCGTTTTGTTTTCTTGAAGCCTGC
GTACTAATGTGCGAGTTCAATAGTTGTCTACTTGCTGCTGCCTCTGCAAG
TACTAGGTACTACTAGTATACATGTACTCATGTGGTGCTTGCCGTGGTCC
CGAGACCATTGACCACGCGCCTCGTTCGAGACGGAGCAGAGTAGTGCAAA
CTCTCACATCCCATGTGTGGACTGGGCCTGTCGGCTGTTCCCTCCTTCGC
CATTTGGCTGTGAGACCCGTCTGTCATATTGTGGTTTGAGGGCGCTCTGC
ACAGCAGTCAATATGTAGAACTGCAAAGTACTATACAGTAGTACTTCGAA
GTAGAAGTAAATGTGTACACATATATGTGTCGAGTATATATGTGCTCACG
CTGTGCTTGCCGTAGTCCCGACACCATTGGCCACGCACCTCGACCGAGAT
GGAGCGGTGCAGATCATGTATATGTTCCTCACGCTGTGCTTGCCGTAGTC
CCGAGAGCTTTGACCCACCGCAGTGACTGCAGTAGGTGCTTCAGTGTATG
CACAGAGACGAGAAACCTCGTCCGAACGTGAGTACACACTTGAGTACATT
ATCGCACAGTAGGTGCAATGTGCAGTAGAGTACTTAGGGCAACACGCATG
ATGGGATGTGATGCGATATCAGGCCGTGTCAAAACTACCGAACGTTGGAG
TACACGTCACATCGTGTCACACATCACATCATGTCAAATGACACACGCAC
GCATGTCATGGAACCCCGGCGCCAGCCCGTCTGCTGCCCGTCCTACCTTC
TGCAACACTGTCACAATCCCCAGTACATACTCCAAAACACTTGACACGCA
CCGACACAACACCCCCCTCACGTCTTAAATGGTACAACTACAGTACTAGT
ACCTCCTCCCCCTCTTCCTCCCCGTCCACCTCCCCTTCCCCACACAAATT
TCCCCTGGCGAGCTAAGGAAGGGCCATTGTTGAGGTCTCTAGTAACGTGG
TCCGCACCTCGCCCCGCGTTGTCCCTTCAAACACTACTTCGAAGTAGTAA
TAGTATGAGAACAGTCAATCTCACACACGTGCGGTTGTACCTCGTTCCAA
TTTATATGAATCACCCCCCTCACGTTCTCCCCACACTCCACCAGACCCTG
CCCCATCCCCCCCCCTCGATCGCTGCAGCAGTGTTGTTCACGGCGAGGGG
CCTGCTGATCCAATTACTGTACATACTCCAAGACACTTGACACGCACCGA
CACAACACCCACGCCCACCCCTGCGCCATTCCTCACCCTCACACCCTCTC
CCATGCCCATCGATCGCTCCAGCGGTATTTCCTATGCCCATCGCTCCAGT
GGTGTCGTTCACAGTTCCAAGTACATACTCCAAAACACTTGACACGCACC
GACACGACACCCCCCTAACGTTCCCCGCATACTCGTACTCGACCAGACCC
TGCCCCATTCCTCACCCTCACACGATCAATCTCACACGCGTGCGATTGTA
CCTCGTTACAACAGTCAATCTCACACAAGTGCGATTTTACCTCGTTACAA
TTTATGTTAATCACCATCTACTCCCATGCCCATCGATCACTCCAGCGGTG
TGGTTCACAGCGAGGGGCCTGCACTGGCCGCCCCCACCCCCCACGCCCAG
CACCTGCCGCTGCCCCCCCTGGCGGACACGAGGGCTGCAGCACCATCGCC
TTCCATCCCCACATGGATGGCCGCTGCAGGCGCCTCTGTGCGGCCCTTCC
AAGTCCCTGGGTGGGACCTTTTTAGCGGGCACGCAGGGGCGCACGCGCAG
GAGCACGATAGCCGGCACCAGCACCAGCAGCACCAGCACCCGTGGCCGTC
GGCCCATTCCGTCCCACACGGTGACCTCCGGGGCGGTCCGCCTCCCATGG
AGGCGGAACACCCTCCCGCACGTGAGCGTCAGCGCTACCCCGTGGGGCGT
TATGCGCAGGGAGCACCTCCCGGGCACGTCGGGCACGAGAGGGAGGTGGA
CGGCGGTGTGTTTGGTCACTTCCGTGGGCAGCGTGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig109:56547..60033+

>mRNA_S-ischiensis_contig109.1933.1 ID=mRNA_S-ischiensis_contig109.1933.1|Name=mRNA_S-ischiensis_contig109.1933.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1734bp|location=Sequence derived from alignment at S-ischiensis_contig109:56547..60033+ (Schizocladia ischiensis KU_0333)
ATGGGCAACCAAGCATCCATGGGCCCTGGAGAAGCCGAAACACAGCTTGG
CGAGCCTGGGGACTCAGATGAAGGCCTTCTTCCCCGGAGCAGGCGCGGTC
GGGAGGCGCAGGGCCTGCTGCCCCCCCCAGCGACAGTCGTAGCGCCGCCC
GATTTCCCGGACCATCTAGGAGTAGGGGCGGCGCGAGGCGCTGCGGGAGG
AGAGGGAGGAGGCGCGAGGGGGTCCGGTAGCGTGGGAGTGGCCCCGCGAG
AGGGGGTGGCCCGGGTGCCGCCCTATCCATATGGGCTGCCAAGTCTAGGG
TACGCGGCAGATAGGCCCCCTCCCGGGCCGGCGGTGGAGGCGCATGGCAC
GAGCTACGGATACGGCTATCACTGTGCCCCCACGGACTACGGCTACCGAC
CTGGGTCCGCATGTAGGGCGCAAGGATGGGCAACCAAGCATCCATGGGCC
CTGGAGAAGCCGAAACACAGCTTGGCGAGCCTGGGGACTCAGATGAAGGC
CTTCTTCCCCGGAGCAGGCGCGGTCGGGAGGCGCAGGGCCTGCTGCCCCC
CCCAGCGACAGTCGTAGCGCCGCCCGATTTCCCGGACCATCTAGGAGTAG
GGGCGGCGCGAGGCGCTGCGGGAGGAGAGGGAGGAGGCGCGAGGGGGTCC
GGTAGCGTGGGAGTGGCCCCGCGAGAGGGGGTGGCCCGGGTGCCGCCCTA
TCCATATGGGCTGCCAAGTCTAGGGTACGCGGCAGATAGGCCCCCTCCCG
GGCCGGCGGTGGAGGCGCATGGCACGAGCTACGGATACGGCTATCACTGT
GCCCCCACGGACTACGGCTACCGACCTGGGTCCGCATGTAGGGCGCAAGG
CGGTGTGGTTCACAGCGAGGGGCCTGCACTGGCCGCCCCCACCCCCCACG
CCCAGCACCTGCCGCTGCCCCCCCTGGCGGACACGAGGGCTGCAGCACCA
TCGCCTTCCATCCCCACATGGATGGCCGCTGCAGGCGCCTCTGTGCGGCC
CTTCCAAGTCCCTGGGTGGGACCTTTTTAGCGGGCACGCAGGGGCGCACG
CGCAGGAGCACGATAGCCGGCACCAGCACCAGCAGCACCAGCACCCGTGG
CCGTCGGCCCATTCCGTCCCACACGGTGACCTCCGGGGCGGTCCGCCTCC
CATGGAGGCGGAACACCCTCCCGCACGTGAGCGTCAGCGCTACCCCGTGG
GGCGTTATGCGCAGGGAGCACCTCCCGGGCACGTCGGGCACGAGAGGGAG
GTGGACGGCGGTGTGTTTGGTCACTTCCGTGGGCAGCGTGGGCGGTGTGG
TTCACAGCGAGGGGCCTGCACTGGCCGCCCCCACCCCCCACGCCCAGCAC
CTGCCGCTGCCCCCCCTGGCGGACACGAGGGCTGCAGCACCATCGCCTTC
CATCCCCACATGGATGGCCGCTGCAGGCGCCTCTGTGCGGCCCTTCCAAG
TCCCTGGGTGGGACCTTTTTAGCGGGCACGCAGGGGCGCACGCGCAGGAG
CACGATAGCCGGCACCAGCACCAGCAGCACCAGCACCCGTGGCCGTCGGC
CCATTCCGTCCCACACGGTGACCTCCGGGGCGGTCCGCCTCCCATGGAGG
CGGAACACCCTCCCGCACGTGAGCGTCAGCGCTACCCCGTGGGGCGTTAT
GCGCAGGGAGCACCTCCCGGGCACGTCGGGCACGAGAGGGAGGTGGACGG
CGGTGTGTTTGGTCACTTCCGTGGGCAGCGTGGG
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