mRNA_S-ischiensis_contig8.19341.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19341.1
Unique NamemRNA_S-ischiensis_contig8.19341.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19341.1 vs. uniprot
Match: A0A6U3BSN8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3BSN8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.190e-21
Identity = 70/106 (66.04%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:  340 VIGAGGMADTRDPEPVNHEDPHKSISAAPSFEDYLKQRQAAAASEPEPVAEXXXXXXDSXXXXXXXXXA----------AEPVIGAGGMADTRDPEPVNHEDPRKS 627
            VIGAGGMADTRDP+ +NHEDP KSIS APSFE+Y+KQR    A+       XXXXXX  XXXXXXXXX           + PVIGAGGMADTRDPE +NHEDPRKS
Sbjct:   34 VIGAGGMADTRDPDALNHEDPRKSISVAPSFEEYMKQRAGETAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGPVIGAGGMADTRDPEALNHEDPRKS 139
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BLAST of mRNA_S-ischiensis_contig8.19341.1 vs. uniprot
Match: A0A7S3DNI2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DNI2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.660e-20
Identity = 63/99 (63.64%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:  346 GAGGMADTRDPEPVNHEDPHKSISAAPSFEDYLKQRQAAAASEPEPVAEXXXXXXDSXXXXXXXXXAAEPV-----IGAGGMADTRDPEPVNHEDPRKS 627
            GAGGMADTRDP+ + HEDP KSIS APSFE+YLKQR   AA  P PV  XXXXX  +    XXXXX          IGAGGMADTRDP+ + HEDPRKS
Sbjct:    1 GAGGMADTRDPDALTHEDPRKSISEAPSFEEYLKQRAGGAAPAPAPVXXXXXXXVAAWSPPXXXXXXXXXXXXXXXIGAGGMADTRDPDALTHEDPRKS 99
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BLAST of mRNA_S-ischiensis_contig8.19341.1 vs. uniprot
Match: A0A7S4S0R1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S0R1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.730e-18
Identity = 64/96 (66.67%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:  343 IGAGGMADTRDPEPVNHEDPHKSISAAPSFEDYLKQR-QAAAASEPEPVAEXXXXXXDSXXXXXXXXXAAEPVIGAGGMADTRDPEPVNHEDPRKS 627
            IG+GGMADTR  E + HEDP KSISAAPSFE+YLK R  AAAA  P PV  XXXXXX  XXXX     +AE  IG+GGMADTR  E + HEDPRKS
Sbjct:   35 IGSGGMADTRIVETLQHEDPRKSISAAPSFEEYLKSRGDAAAAPAPAPVXXXXXXXXXXXXXXAPAAPSAEGHIGSGGMADTRIVETLQHEDPRKS 130
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BLAST of mRNA_S-ischiensis_contig8.19341.1 vs. uniprot
Match: A0A7S2JSU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSU5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.980e-18
Identity = 50/95 (52.63%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:  343 IGAGGMADTRDPEPVNHEDPHKSISAAPSFEDYLKQRQAAAASEPEPVAEXXXXXXDSXXXXXXXXXAAEPVIGAGGMADTRDPEPVNHEDPRKS 627
            +GAGGMADTRDPE  + +DP KSISAAPSFE+YLKQR  A A +P   A                    +  +GAGGMADTRDP+    EDPRKS
Sbjct:   31 LGAGGMADTRDPEEYSDDDPRKSISAAPSFEEYLKQRSGAVAEKPVVKA--------------VKAAIEDHKLGAGGMADTRDPDVHEDEDPRKS 111
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BLAST of mRNA_S-ischiensis_contig8.19341.1 vs. uniprot
Match: A0A7S2Y9I7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y9I7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.440e-14
Identity = 55/86 (63.95%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:  340 VIGAGGMADTRDPEPVNHEDPHKSISAAPSFEDYLKQRQAAAASEPEPVAEXXXXXXDSXXXXXXXXXAAEP-----VIGAGGMAD 582
            VIGAGGMADTRDP+ + HEDP KSIS APSFE+YLKQR   AA  P PV  XXXXX  +    XXXXX         VIGAGGMAD
Sbjct:   64 VIGAGGMADTRDPDALTHEDPRKSISEAPSFEEYLKQRAGGAAPAPAPVXXXXXXXVAAWSPPXXXXXXXXXXXXXXVIGAGGMAD 149
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BLAST of mRNA_S-ischiensis_contig8.19341.1 vs. uniprot
Match: A0A7S1YUN2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YUN2_TRICV)

HSP 1 Score: 73.2 bits (178), Expect = 9.830e-13
Identity = 59/97 (60.82%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:  346 GAGGMADTRDPEPVNHEDPHKSISAAPSFEDYLKQRQAAAASEPEPVAEXXXXXXDSXXXXXXXXXAAE------PVIGAGGMADTRDPEPVNHEDP 618
            GAGGM DTRDP+  +HEDP KSISAAPSFE+Y+K R   AA        XXXXXX  XXXXXXXXX         P +GAGGM DTR+PE + HEDP
Sbjct:   73 GAGGMFDTRDPDAFSHEDPRKSISAAPSFEEYMKARAGGAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAPEMGAGGMFDTRNPEALQHEDP 169
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BLAST of mRNA_S-ischiensis_contig8.19341.1 vs. uniprot
Match: A0A835YLE0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.180e-12
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:  346 GAGGMADTRDPEPVNHEDPHKSISAAPSFEDYLKQRQAAAA 468
            G GGMADTRDPEPV+HEDP KSIS AP+FE+Y+KQ+QA AA
Sbjct:   37 GVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQKQAEAA 77
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BLAST of mRNA_S-ischiensis_contig8.19341.1 vs. uniprot
Match: A0A7S2XX01_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX01_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.650e-12
Identity = 57/107 (53.27%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:  343 IGAGGMADTRDPEP-VNHEDPHKSISAAPSFEDYLKQRQAAAASEPEPVAEXXXXXXDSXXXXXXXXXAAEPV----------IGAGGMADTRDPEP-VNHEDPRKS 627
            +G+GGMADTRDPEP +N  DP +SISAAPSFE+Y+KQ+   A +       XXXXXX  XXXX   XX               +G+GGMADTRDPEP +N  DPR+S
Sbjct:   41 VGSGGMADTRDPEPFINESDPRQSISAAPSFEEYMKQKAGGAPAAXXXXXXXXXXXXXXXXXXSWGXXXXXXXXXXXXTGAGHVGSGGMADTRDPEPFINESDPRQS 147
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BLAST of mRNA_S-ischiensis_contig8.19341.1 vs. uniprot
Match: A0A835YTB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.260e-12
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:  346 GAGGMADTRDPEPVNHEDPHKSISAAPSFEDYLKQRQAA 462
            G GGMADTRDPEPV+HEDP KSIS AP+FE+Y+KQ+QAA
Sbjct:   39 GVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQKQAA 77
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BLAST of mRNA_S-ischiensis_contig8.19341.1 vs. uniprot
Match: A0A6U6EBV6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6EBV6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.620e-11
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  346 GAGGMADTRDPEPVNHEDPHKSISAAPSFEDYLKQRQAAAASEPEPV 486
            GAGGM DTRDPE ++HEDP KSISAAPSFE+YLK R    A+ P P 
Sbjct:   54 GAGGMFDTRDPETMDHEDPRKSISAAPSFEEYLKSRDGGGAAAPAPA 100
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U3BSN8_9STRA2.190e-2166.04Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3DNI2_9STRA2.660e-2063.64Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S4S0R1_9STRA1.730e-1866.67Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2JSU5_9STRA4.980e-1852.63Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2Y9I7_9STRA8.440e-1463.95Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S1YUN2_TRICV9.830e-1360.82Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A835YLE0_9STRA1.180e-1278.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XX01_9STRA1.650e-1253.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YTB4_9STRA3.260e-1279.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U6EBV6_9STRA3.620e-1168.09Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:811006..811841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue5.3e-09
Seed eggNOG ortholog159749.K0TP57
EggNOG free text desc.Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
EggNOG OGs2EY4J@1,2SZPF@2759,2XFTS@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size627
Cds size627
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817256.8822782-CDS-S-ischiensis_contig8:811005..8115051622817256.8822782-CDS-S-ischiensis_contig8:811005..811505Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 811006..811505 -
1695740974.549358-CDS-S-ischiensis_contig8:811005..8115051695740974.549358-CDS-S-ischiensis_contig8:811005..811505Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 811006..811505 -
1622817256.8961518-CDS-S-ischiensis_contig8:811714..8118411622817256.8961518-CDS-S-ischiensis_contig8:811714..811841Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 811715..811841 -
1695740974.5650535-CDS-S-ischiensis_contig8:811714..8118411695740974.5650535-CDS-S-ischiensis_contig8:811714..811841Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 811715..811841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19341.1prot_S-ischiensis_contig8.19341.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 811006..811841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19341.1

>prot_S-ischiensis_contig8.19341.1 ID=prot_S-ischiensis_contig8.19341.1|Name=mRNA_S-ischiensis_contig8.19341.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=209bp
MESEEYSELIRRLSEADGSRIFSDAELAAVDMDRDPTEEEIAEWARQASG
EPVTSQAETAPEPVAEEPAAASEPEPVEEEPAAASEPEPVAEAPARAHEP
AAEAPAPEPAAEPVIGAGGMADTRDPEPVNHEDPHKSISAAPSFEDYLKQ
RQAAAASEPEPVAEAPAPAPDSVAEAPAPEPAAEPVIGAGGMADTRDPEP
VNHEDPRKS
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mRNA from alignment at S-ischiensis_contig8:811006..811841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19341.1 ID=mRNA_S-ischiensis_contig8.19341.1|Name=mRNA_S-ischiensis_contig8.19341.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=836bp|location=Sequence derived from alignment at S-ischiensis_contig8:811006..811841- (Schizocladia ischiensis KU_0333)
ATGGAGTCCGAGGAATATTCCGAGCTTATTCGTCGCCTTTCAGAAGCTGA
CGGCTCTCGTATTTTCTCTGACGCTGAGCTAGCGGCCGTCGACATGGACA
GGGACCCCACAGAAGAAGAAATTGCAGGTGTGTACGATTTTGTGTGTGTG
ACGTGATGTGATGCGAGTGTGTATGTACGCATGAGTAGATACTGTAGTTT
GTCATCATATCATGTATGCCGAACAGCCCGAAAGAACACAGAATGCAACA
TCACATGCAGCCTGGAGTTTGGCGCAGACGTGGCCTTTCGTGTGTGTGTG
TGTGCGTGGCGTGATGTGATTCTATGTCACCGGCAGAGTGGGCAAGGCAG
GCATCTGGGGAGCCGGTGACCTCCCAGGCGGAAACCGCGCCCGAACCTGT
GGCAGAGGAACCCGCGGCTGCCAGTGAGCCCGAGCCTGTTGAAGAGGAAC
CTGCTGCTGCCAGTGAGCCCGAGCCTGTTGCAGAGGCGCCTGCCCGCGCA
CATGAGCCTGCGGCGGAGGCCCCGGCGCCGGAGCCGGCCGCGGAGCCGGT
GATCGGCGCGGGGGGAATGGCGGACACGAGGGACCCGGAACCTGTGAACC
ACGAAGACCCCCACAAGAGTATCTCTGCTGCTCCGTCTTTTGAGGACTAC
CTGAAGCAGCGGCAGGCTGCTGCTGCCAGTGAGCCCGAGCCTGTTGCAGA
GGCGCCTGCCCCCGCACCTGATTCTGTGGCGGAGGCCCCGGCGCCGGAGC
CGGCCGCGGAGCCGGTGATTGGCGCGGGGGGAATGGCGGACACGAGGGAC
CCGGAGCCTGTGAACCACGAAGACCCCCGCAAGAGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:811006..811841-

>mRNA_S-ischiensis_contig8.19341.1 ID=mRNA_S-ischiensis_contig8.19341.1|Name=mRNA_S-ischiensis_contig8.19341.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1254bp|location=Sequence derived from alignment at S-ischiensis_contig8:811006..811841- (Schizocladia ischiensis KU_0333)
ATGGAGTCCGAGGAATATTCCGAGCTTATTCGTCGCCTTTCAGAAGCTGA
CGGCTCTCGTATTTTCTCTGACGCTGAGCTAGCGGCCGTCGACATGGACA
GGGACCCCACAGAAGAAGAAATTGCAGATGGAGTCCGAGGAATATTCCGA
GCTTATTCGTCGCCTTTCAGAAGCTGACGGCTCTCGTATTTTCTCTGACG
CTGAGCTAGCGGCCGTCGACATGGACAGGGACCCCACAGAAGAAGAAATT
GCAGAGTGGGCAAGGCAGGCATCTGGGGAGCCGGTGACCTCCCAGGCGGA
AACCGCGCCCGAACCTGTGGCAGAGGAACCCGCGGCTGCCAGTGAGCCCG
AGCCTGTTGAAGAGGAACCTGCTGCTGCCAGTGAGCCCGAGCCTGTTGCA
GAGGCGCCTGCCCGCGCACATGAGCCTGCGGCGGAGGCCCCGGCGCCGGA
GCCGGCCGCGGAGCCGGTGATCGGCGCGGGGGGAATGGCGGACACGAGGG
ACCCGGAACCTGTGAACCACGAAGACCCCCACAAGAGTATCTCTGCTGCT
CCGTCTTTTGAGGACTACCTGAAGCAGCGGCAGGCTGCTGCTGCCAGTGA
GCCCGAGCCTGTTGCAGAGGCGCCTGCCCCCGCACCTGATTCTGTGGCGG
AGGCCCCGGCGCCGGAGCCGGCCGCGGAGCCGGTGATTGGCGCGGGGGGA
ATGGCGGACACGAGGGACCCGGAGCCTGTGAACCACGAAGACCCCCGCAA
GAGTAGTGGGCAAGGCAGGCATCTGGGGAGCCGGTGACCTCCCAGGCGGA
AACCGCGCCCGAACCTGTGGCAGAGGAACCCGCGGCTGCCAGTGAGCCCG
AGCCTGTTGAAGAGGAACCTGCTGCTGCCAGTGAGCCCGAGCCTGTTGCA
GAGGCGCCTGCCCGCGCACATGAGCCTGCGGCGGAGGCCCCGGCGCCGGA
GCCGGCCGCGGAGCCGGTGATCGGCGCGGGGGGAATGGCGGACACGAGGG
ACCCGGAACCTGTGAACCACGAAGACCCCCACAAGAGTATCTCTGCTGCT
CCGTCTTTTGAGGACTACCTGAAGCAGCGGCAGGCTGCTGCTGCCAGTGA
GCCCGAGCCTGTTGCAGAGGCGCCTGCCCCCGCACCTGATTCTGTGGCGG
AGGCCCCGGCGCCGGAGCCGGCCGCGGAGCCGGTGATTGGCGCGGGGGGA
ATGGCGGACACGAGGGACCCGGAGCCTGTGAACCACGAAGACCCCCGCAA
GAGT
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