mRNA_S-ischiensis_contig108.1914.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig108.1914.1
Unique NamemRNA_S-ischiensis_contig108.1914.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig108.1914.1 vs. uniprot
Match: A0A835ZF51_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF51_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.600e-26
Identity = 67/179 (37.43%), Postives = 100/179 (55.87%), Query Frame = 3 
Query:   18 AWCCRKNAGMGPTLQDQLREKLSRVELCYPGTHYACVLDHQGN-----------------CVSAFVVDD-RGAQHTELCSAVTTLKQAAAQFAATLDQMECTVLHISGDNHIFSCYDVGNN---------ILAFYS-HMGAEALRVFDTREADVQLQDLLADVKLMLGGATLLNASSAP 470
            +WCCR++ GM P+L D+L  +L ++   YPGTHY C++D  G                     +F  DD   A   + C+AV++L  AA QFA TLDQM C+V+HI+GD H+FSCY+V +          ILAFY+  +    +   DTR+AD  ++ ++A ++ ML G     A+S+P
Sbjct:    3 SWCCRESTGMVPSLPDELETELRQILHYYPGTHYTCLMDAAGRRQGGSSLTIGAVLPHPLVTGSFTSDDVLDAPPDKFCTAVSSLHNAAVQFARTLDQMGCSVMHIAGDQHLFSCYEVVDKSQPGLVNPWILAFYTTSVDGVPVSAIDTRDADEGVKKIVAALESMLAGVMTPPANSSP 181
[Close]
BLAST of mRNA_S-ischiensis_contig108.1914.1 vs. uniprot
Match: A0A0G4IJA9_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJA9_PLABS)

HSP 1 Score: 103 bits (256), Expect = 1.820e-24
Identity = 48/137 (35.04%), Postives = 86/137 (62.77%), Query Frame = 3 
Query:   21 WCCRKNAGMGPTLQDQLREKLSRVELCYPGTHYACVLDHQGNCVSAFVVDDRGAQHTELCSAVTTLKQAAAQFAATLDQMECTVLHISGDNHIFSCYDVGNNILAFYSHMGAEALRVFDTREADVQLQDLLADVKLM 431
            WCCR+ AG+   +  Q++ KL  +E  +P T  +C++   G  ++  V  D+  +  +L   +  LK+AA QF +TL+Q  C V+H+ G+  +FSCY++G+++LAFY+ M    L  +DT +AD ++  ++AD++L+
Sbjct:    2 WCCRRPAGLSAQVSRQIQAKLREIETVFPRTVVSCIVTQTGELIAQQVKPDQE-RVDDLVLPIAQLKRAAEQFGSTLNQSSCPVVHLRGNRVMFSCYELGDHLLAFYTDMSGVDLMTYDTADADSRMGFIIADLRLL 137
[Close]
BLAST of mRNA_S-ischiensis_contig108.1914.1 vs. uniprot
Match: A0A0H5QGE2_9EUKA (Uncharacterized protein (Fragment) n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QGE2_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 1.260e-21
Identity = 45/136 (33.09%), Postives = 85/136 (62.50%), Query Frame = 3 
Query:   24 CCRKNAGMGPTLQDQLREKLSRVELCYPGTHYACVLDHQGNCVSAFVVDDRGAQHTELCSAVTTLKQAAAQFAATLDQMECTVLHISGDNHIFSCYDVGNNILAFYSHMGAEALRVFDTREADVQLQDLLADVKLM 431
            CCR++ G    +  Q++ KL  +E+ +P T  +C+L   G  + A  +     +  +L   + +LK+AA QF +TL+  +C +LHI G+N +FSCY+ G+N+LAFYS++  +    +DT +AD ++  ++++++L+
Sbjct:   31 CCRRSNGFSLQVMKQIQGKLKEIEMVFPETTASCILSQSGELI-AQQIKGNNPRVDDLVLPIASLKKAAEQFGSTLNAAKCPILHIRGNNVMFSCYEFGDNLLAFYSNLNGKETE-YDTTDADTRMSIIISELRLL 164
[Close]
BLAST of mRNA_S-ischiensis_contig108.1914.1 vs. uniprot
Match: A0A7R9UAI9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAI9_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 7.590e-21
Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 3 
Query:   24 CCRKNAGMGPTLQDQLREKLSRVELCYPGTHYACVLDHQGNCVSAFVVDDRGAQHTE--LCSAVTTLKQAAAQFAATLDQMECTVLHISGDNHIFSCYDVGNNILAFYSHMGAEALRVFDTREADVQLQD-LLADVKLML 434
            CC + +GM P  QD +REKL  +   +PG  Y+CVL+  G      V+   G+   +  L SA+++L+ AA QFA+ L Q +C+ +HISG N +FSCY V  N+LA YS      +  FD    D Q+++ ++ D++LML
Sbjct:    3 CCERQSGMVPNGQDLIREKLGHIGRIFPGYSYSCVLNGVGE-----VIVHTGSSELDGDLPSAISSLQLAAEQFASHLSQADCSAIHISGANVMFSCYGVDANLLALYSD---NTIDTFDMVAKDEQIEEEIIGDLRLML 134
[Close]
BLAST of mRNA_S-ischiensis_contig108.1914.1 vs. uniprot
Match: F0VYZ9_9STRA (Uncharacterized protein AlNc14C1G146 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VYZ9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.070e-17
Identity = 49/126 (38.89%), Postives = 74/126 (58.73%), Query Frame = 3 
Query:   72 REKLSRVELCYPGTHYACVLDHQ-GNCVSAFVVDDRGAQHTELCSAVTTLKQAAAQFAATLDQMECTVLHISGDNHIFSCYDVGNNILAFYSHMGAEALRVFDTREAD-------VQLQDLLADVK 425
            RE+L +V+  +PGT Y C+LD + GN ++    ++      E    V  L++AA QFA TL+QM+  +LHI GD+ +FSCY +   +LAFYS +    + +FD  EAD       ++L  L+ DVK
Sbjct:   20 REQLDKVKDVFPGTSYVCLLDGENGNVIAQS--EETNPNTEEFARFVRMLRKAAMQFAETLNQMDSQILHIKGDDTMFSCYGLDRTVLAFYSQLPDVEMELFDYTEADKNLETINLELDKLVRDVK 143
[Close]
BLAST of mRNA_S-ischiensis_contig108.1914.1 vs. uniprot
Match: A0A484ECZ2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ECZ2_BRELC)

HSP 1 Score: 84.7 bits (208), Expect = 2.500e-17
Identity = 52/141 (36.88%), Postives = 78/141 (55.32%), Query Frame = 3 
Query:   21 WCCRKNAGMGPTLQDQL-REKLSRVELCYPGTHYACVLDH-QGNCVSAFVVDDRGAQHT-ELCSAVTTLKQAAAQFAATLDQMECTVLHISGDNHIFSCYDVGNNILAFYSHMGAEALRVFDTREADVQLQDLLADVKLML 434
            WC   +   G   Q  L +E+  R++  YPGT Y C+LD   G+ ++   + +    HT E+   + TLK AA QFAATL+Q++  V+H+ G   +FSCY     ILAFYS M    L  FD  EAD +++ +  ++  +L
Sbjct:    4 WCRCLSRKRGDLPQRMLFQEQFERIKAVYPGTSYVCLLDGTSGDMIAQSEITEI---HTDEIARTIITLKNAALQFAATLNQIDPQVVHVRGSQGMFSCYGTAQMILAFYSEMPGMDLEGFDCFEADKRIESITGELHRVL 141
[Close]
BLAST of mRNA_S-ischiensis_contig108.1914.1 vs. uniprot
Match: A0A8K1C6G3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6G3_PYTOL)

HSP 1 Score: 80.5 bits (197), Expect = 1.460e-15
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 3 
Query:   72 REKLSRVELCYPGTHYACVLDH-QGNCVSAFVVDDRGAQHTELCSAVTTLKQAAAQFAATLDQMECTVLHISGDNHIFSCYDVGNNILAFYSHMGAEALRVFDTREAD 392
            +E+  R+   YPGT YAC+L+   G  ++   +     +  EL   + TLK+AA QFA TL Q+E  V+H+ GD+ +FSC+     ILAFY+ M    L +FD  EAD
Sbjct:   23 QEQFERIRGVYPGTDYACLLNAASGEIIAQTEIPVVNTE--ELARTIVTLKRAAQQFATTLTQVESQVVHVKGDDRMFSCFGGEGTILAFYTQMPGVNLELFDCNEAD 128
[Close]
BLAST of mRNA_S-ischiensis_contig108.1914.1 vs. uniprot
Match: D0MTT8_PHYIT (Uncharacterized protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0MTT8_PHYIT)

HSP 1 Score: 80.1 bits (196), Expect = 1.820e-15
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = 3 
Query:   72 REKLSRVELCYPGTHYACVLDHQGNCVSAFVVDDRGAQHT-ELCSAVTTLKQAAAQFAATLDQMECTVLHISGDNHIFSCYDVGNNILAFYSHMGAEALRVFDTREADVQLQDLLADVKLML 434
            +E+  R++  YPGT Y C+LD  G+        +    +T E    +  LK AA QFAATL+Q++  V+H+ G   +FSCY   + ILAFYS M    L +FD  EAD +++ +  ++  +L
Sbjct:   22 QEQFERIKTVYPGTSYVCLLD--GDTGDMIAQSETTEVNTDEFTRTIINLKDAALQFAATLNQIDPQVVHVRGAQGMFSCYGSAHMILAFYSEMPGVGLEMFDCFEADKRIEPITGELHRIL 141
[Close]
BLAST of mRNA_S-ischiensis_contig108.1914.1 vs. uniprot
Match: L8H113_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H113_ACACA)

HSP 1 Score: 79.7 bits (195), Expect = 2.260e-15
Identity = 38/136 (27.94%), Postives = 74/136 (54.41%), Query Frame = 3 
Query:   27 CRKNAGMGPTLQDQLREKLSRVELCYPGTHYACVLDHQGNCVSAFVVDDRGAQHTELCSAVTTLKQAAAQFAATLDQMECTVLHISGDNHIFSCYDVGNNILAFYSHMGAEALRVFDTREADVQLQDLLADVKLML 434
            C+K  G+ P +  +L      ++  +P T    +++ QG  + AF  +       ++C  +  LK+AA +FA T  + EC++L + G   IFSCY +G N +AF++ +  +     ++ + ++++Q L  ++KLML
Sbjct:    6 CKKETGLSPVVYRKLENVFKELQTLFPATPSCAIVNAQGELLYAFGEEASAGIQEDICLTLQKLKRAAVKFAETQGEHECSLLRVKGTKQIFSCYQIGENFMAFFTPLPVD--EEVESVQTELRMQALCEELKLML 139
[Close]
BLAST of mRNA_S-ischiensis_contig108.1914.1 vs. uniprot
Match: A0A5D6Y3Y3_9STRA (Foie-gras_1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3Y3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.150e-14
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 3 
Query:   72 REKLSRVELCYPGTHYACVLDHQ-GNCVSAFVVDDRGAQHTELCSAVTTLKQAAAQFA--ATLDQMECTVLHISGDNHIFSCYDVGNNILAFYSHMGAEALRVFDTREADVQLQDL 410
            +E+  R++  YPGT+Y C+L+ + G  ++   V    A+  E    + TLK+AA QF   ATL+Q+E  V+H+ GD+ +FSCY     ILAFYS M    L +FD  EAD  ++ +
Sbjct: 1184 QEQFDRIKNVYPGTNYVCLLNSENGEMIAQSEVATVNAE--EFTRTIITLKRAALQFGEGATLNQIESQVVHVKGDDRMFSCYGSEKTILAFYSEMPGVDLELFDCSEADKGIESV 1297
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A835ZF51_9STRA1.600e-2637.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4IJA9_PLABS1.820e-2435.04Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0H5QGE2_9EUKA1.260e-2133.09Uncharacterized protein (Fragment) n=2 Tax=Spongos... [more]
A0A7R9UAI9_9STRA7.590e-2139.29Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0VYZ9_9STRA2.070e-1738.89Uncharacterized protein AlNc14C1G146 n=1 Tax=Albug... [more]
A0A484ECZ2_BRELC2.500e-1736.88Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A8K1C6G3_PYTOL1.460e-1540.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0MTT8_PHYIT1.820e-1536.89Uncharacterized protein n=16 Tax=Peronosporaceae T... [more]
L8H113_ACACA2.260e-1527.94Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A5D6Y3Y3_9STRA6.150e-1439.66Foie-gras_1 domain-containing protein n=1 Tax=Pyth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig108contigS-ischiensis_contig108:91239..94607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue5e-16
Seed eggNOG ortholog36331.EPrPI00000018888
EggNOG free text desc.function. Source PGD
EggNOG OGs1MH4D@121069,2CYH3@1,2S4D0@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size644
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig108.1914.1prot_S-ischiensis_contig108.1914.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig108 91253..94514 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.8028727-UTR-S-ischiensis_contig108:91238..912521622815572.8028727-UTR-S-ischiensis_contig108:91238..91252Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 91239..91252 +
1695739778.3365934-UTR-S-ischiensis_contig108:91238..912521695739778.3365934-UTR-S-ischiensis_contig108:91238..91252Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 91239..91252 +
1622815572.8641121-UTR-S-ischiensis_contig108:94514..946071622815572.8641121-UTR-S-ischiensis_contig108:94514..94607Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 94515..94607 +
1695739778.3949294-UTR-S-ischiensis_contig108:94514..946071695739778.3949294-UTR-S-ischiensis_contig108:94514..94607Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 94515..94607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.8187017-CDS-S-ischiensis_contig108:91252..913891622815572.8187017-CDS-S-ischiensis_contig108:91252..91389Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 91253..91389 +
1695739778.3464634-CDS-S-ischiensis_contig108:91252..913891695739778.3464634-CDS-S-ischiensis_contig108:91252..91389Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 91253..91389 +
1622815572.829032-CDS-S-ischiensis_contig108:91844..919331622815572.829032-CDS-S-ischiensis_contig108:91844..91933Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 91845..91933 +
1695739778.3594234-CDS-S-ischiensis_contig108:91844..919331695739778.3594234-CDS-S-ischiensis_contig108:91844..91933Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 91845..91933 +
1622815572.8421483-CDS-S-ischiensis_contig108:92475..925611622815572.8421483-CDS-S-ischiensis_contig108:92475..92561Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 92476..92561 +
1695739778.3702528-CDS-S-ischiensis_contig108:92475..925611695739778.3702528-CDS-S-ischiensis_contig108:92475..92561Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 92476..92561 +
1622815572.8540285-CDS-S-ischiensis_contig108:94289..945141622815572.8540285-CDS-S-ischiensis_contig108:94289..94514Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 94290..94514 +
1695739778.3811274-CDS-S-ischiensis_contig108:94289..945141695739778.3811274-CDS-S-ischiensis_contig108:94289..94514Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 94290..94514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig108.1914.1

>prot_S-ischiensis_contig108.1914.1 ID=prot_S-ischiensis_contig108.1914.1|Name=mRNA_S-ischiensis_contig108.1914.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=179bp
MAWCCRKNAGMGPTLQDQLREKLSRVELCYPGTHYACVLDHQGNCVSAFV
VDDRGAQHTELCSAVTTLKQAAAQFAATLDQMECTVLHISGDNHIFSCYD
VGNNILAFYSHMGAEALRVFDTREADVQLQDLLADVKLMLGGATLLNASS
APAPSKGNAARAPAAKTVTGSNFNKHPG*
back to top

mRNA from alignment at S-ischiensis_contig108:91239..94607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig108.1914.1 ID=mRNA_S-ischiensis_contig108.1914.1|Name=mRNA_S-ischiensis_contig108.1914.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3369bp|location=Sequence derived from alignment at S-ischiensis_contig108:91239..94607+ (Schizocladia ischiensis KU_0333)
CGAAAACAAACAACATGGCCTGGTGTTGCCGCAAGAACGCGGGCATGGGC
CCTACACTCCAGGACCAACTACGAGAGAAACTCAGCCGTGTGGAGCTGTG
CTACCCTGGCACACACTACGCTTGTGTGCTGGACCATCAGGGGAACTGTG
TGTGAGTGAAATCGTCGCGTGCCCGCTTGTTGCGGGCTTGTATGGTCGCA
GAACCCCATCCAGTACATACATTAACCCACCCAAACGGCCAATGACTGGT
GGCTCTATGTATGATGTGGGCGCAGGTGCATGGACATCTTTGTTCCCGGA
GTCTTCCCCTAGAGTTGAGGTTTCACATCCTATATACGGTGGCTGAGCAT
GACCTGCTATCCCCCCTGACCCGGGCCCTGGGTTGGCAGCTTGTGACACG
GCAGTAATTTTGTGGTGTTCCACACCTGTGTGGTGGATCATTGAAGTAAT
TCACCGCTGGCCTGTTGTTGGGGGAGGGACTCAACATGCCAATGGGCACG
TGATACGGCAACTGCAGCCATGTTCAGCGAGCACATGAACTGGGCCCATT
GCACCCGCAGCCAGCGCGCTTACGCATCATGTCGGTCTGATCGTCCTGAT
TCTCAGGTCAGCATTCGTTGTGGACGACAGGGGGGCTCAGCACACAGAAT
TGTGCTCTGCAGTGACCACACTCAAACAAGCAGCTGCACAGTTTGGTGAG
CCTGGGAACACGTGTGGGTCAATTGTGGATGTCATGATATGCATGGAGCG
GTACAACAGTGGCTGCAAGGACGCAGAAGTTATCTCGACCGTGTATCTGC
TACGGCCAAAGTGATTTTGAGCCCAGGGGTGGGGCACTATGAGCCCCTGC
TTCATCAAGCCATAGCTGGAGGTTTTGCCGCTCTGTCCTGTGTGCAGATG
TACAATCAGCACCTGAAATACCCTGACGCTGCTGCGCAGGCCTGACCGAT
TGACCAGGGTGGAAACATACGCGTCTGTCTTACCTGAAGGGCACAGTGCA
CTTCTGTGGCAAAGGAGTACGCATGTGAATGTACCACACTGTTGCATGTG
GCCAGACCGCATTCAGCCTGTGAAGTGAGTGGAGGCCCCACCAGCACAAC
GAATGATAAACTTTGGAGGACAGTACTACTCTTTTGCAATAGAGTGTCTT
TTGCCTTACCTAAGCTGCGTGCGCACGTCGTGCCAAATTTGGCTTGGTTT
GACACAGCCCCACTTTACTGCATTCCTGTTGCTGCAGCTGCGACATTGGA
CCAGATGGAGTGCACGGTTCTGCACATTTCGGGGGACAACCACATTTTTT
CTTGCTATGACGTGGGAAACAATGTGAGCACGGAAGCCTGGAGTTGTGTT
ATATTTTGTCACCGTTCACCCCCCTACAAACAGCTGCTTCATGTTTTAAA
CCATTGTACATACTTACTGCAGAGCGCCACTGTAGCGTACAAGTACAAGC
ATGGTGTGGATTGAAGCACCTGTCTCGACAAAGGTTGTGCGGTACTGTAC
AGCACTGTATTTGCTTCGAAGTGCATACTTGACCTCGGAGCCGGGGGCGG
TGTGCTTGGAAAATTTCTCCATAGGGATCACCTGGTAATCAATGTTGCGC
GTGCGATCCTTTCCATACTTTATGCTCCGCCGGCAATGGCGCGTGGTCAA
TGGTCTCGGGACTACGGCAAGCACAACGTGAGCATATAAGTATACTTCAG
AGCTCCACTCTAGGAAAAGGGGCATCCATACTTCTTTTGCCCTCCTCTCC
GAGTCATGTTTCTAGGTACTGTCATTTTGTGCTTGTTGCAACCCGTAGGA
CTATTGACATAGTAAGTCCTGTAGCTAGGCACACAAGGCTGTGTCGCAAG
ACAAGCCAATGAGTACATGTAAGTATATGCTAGCATGTGATTCAAGTATT
TTCCCACCTGGGACACACACGTCCAAGTACTTCCAACTGTACACAGTGGC
AGCAATCTCGCGTTTTTGTTGCACATGGGTCGCTGTGCTTGCCTGCGTGC
TTCGACCTTGGAAGAAGAAACCCGCTATACTGCGGCCATGTGCGTGCAGA
GTGCGCCAATGAAGGGGTCAAGGCATTGGATTGTAGCGCGGGCTGTGCAG
CTCTACAACTCCTTCTCCGCGTGAACATTGTTGGGGCCTGCCTGACAAGC
TGCAACTGGAGCATATCCCACCGAAGACCAACTTTGTTGATGCACGGTAC
TGCAGTTCGTGACCACAAGTCCCTGCGGCCCAGCTTGCCCTCATCCGGCA
TTCTGAATGCAATGGCATGACACGCTTGGCCGTGCTTGCCTGGAATCACA
ATGTTGGTATATATGTATGAACGAGTGTATGTACAGTGCTCACGTTGCTC
CGTCTCGATCGAGGCGCGTGGTCAATGGTCTCGGGACTATGGCAAGCATA
ACGTGAGTACATATATACTCAGGTTGTGCTTACCGTAGTCCCAATACCAT
GGACCACGTGCCGTTGATGGCGGAGGCAAGGCAGGGTGGAGGGCAAGACC
ACCTCGATGCTCATGGCAGGGGGGTGGTCAGGTCCATACCCCCCCTCTCC
CTGACTCGCGAGAGTCCGGGGGGGGGGGACCCCTCCCCTGCCGGACCGAG
GTGCAGCAGAGGAGGGGGGTCCCCCGCCATGCCGGGGCATGGAGCGGGGA
TAGTCCAAGGTTACAAAAGAGTATCCTACGTACTCGGGCCAACCGCCACA
CCACACAGACACAAGGAAAATCTTGAACCGCAAGATCTACGTTGCTCTGT
GTTTCCTCTGGCCACAGCACAGTCTCACCCGAGGGATCCAGAAGCGATGT
AGGTACTGTAGTCTGCTTTCCTGTGGGTGCACTTGTGAGAGCTTTCGTAG
CAACTTGTACGGGGTACATTCGGGGAGAGTAGTGCGTAGAGTCATCCTGG
CCAAAATGTAGTGGGGACACTCGAGCGTAACTGTAGTCAACTGTACTTCA
AGTGCCAGCGTGGAGTGTGAAGCAGCTGCACTTATTTTCCCTCGCCTTGG
GCTACTTCGTACGCCGCCATCCCCAAAACGGATACTGTGTACCCCTCGCA
GATACTGGCCTTCTACTCGCACATGGGAGCCGAAGCTCTGCGCGTGTTTG
ACACACGGGAAGCAGACGTTCAACTGCAGGATCTCCTGGCTGACGTGAAG
CTAATGCTGGGTGGAGCCACCCTGCTGAACGCATCATCAGCACCAGCACC
ATCCAAAGGCAACGCTGCTCGAGCACCCGCTGCAAAAACTGTAACCGGCT
CTAATTTTAATAAACACCCCGGCTAAGTACATTGCATCGTCAATCGCCGT
GCTTGGCACACACCAGTTGGTACTGCTTGGCCTGCAGATCTCCTGTCAAC
ATTGCCGCCGGCGTCCGAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig108:91239..94607+

>mRNA_S-ischiensis_contig108.1914.1 ID=mRNA_S-ischiensis_contig108.1914.1|Name=mRNA_S-ischiensis_contig108.1914.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1074bp|location=Sequence derived from alignment at S-ischiensis_contig108:91239..94607+ (Schizocladia ischiensis KU_0333)
ATGGCCTGGTGTTGCCGCAAGAACGCGGGCATGGGCCCTACACTCCAGGA
CCAACTACGAGAGAAACTCAGCCGTGTGGAGCTGTGCTACCCTGGCACAC
ACTACGCTTGTGTGCTGGACCATCAGGGGAACTGTGTATGGCCTGGTGTT
GCCGCAAGAACGCGGGCATGGGCCCTACACTCCAGGACCAACTACGAGAG
AAACTCAGCCGTGTGGAGCTGTGCTACCCTGGCACACACTACGCTTGTGT
GCTGGACCATCAGGGGAACTGTGTGTCAGCATTCGTTGTGGACGACAGGG
GGGCTCAGCACACAGAATTGTGCTCTGCAGTGACCACACTCAAACAAGCA
GCTGCACAGTTTGGTCAGCATTCGTTGTGGACGACAGGGGGGCTCAGCAC
ACAGAATTGTGCTCTGCAGTGACCACACTCAAACAAGCAGCTGCACAGTT
TGCTGCGACATTGGACCAGATGGAGTGCACGGTTCTGCACATTTCGGGGG
ACAACCACATTTTTTCTTGCTATGACGTGGGAAACAATCTGCGACATTGG
ACCAGATGGAGTGCACGGTTCTGCACATTTCGGGGGACAACCACATTTTT
TCTTGCTATGACGTGGGAAACAATATACTGGCCTTCTACTCGCACATGGG
AGCCGAAGCTCTGCGCGTGTTTGACACACGGGAAGCAGACGTTCAACTGC
AGGATCTCCTGGCTGACGTGAAGCTAATGCTGGGTGGAGCCACCCTGCTG
AACGCATCATCAGCACCAGCACCATCCAAAGGCAACGCTGCTCGAGCACC
CGCTGCAAAAACTGTAACCGGCTCTAATTTTAATAAACACCCCGGCTAAA
TACTGGCCTTCTACTCGCACATGGGAGCCGAAGCTCTGCGCGTGTTTGAC
ACACGGGAAGCAGACGTTCAACTGCAGGATCTCCTGGCTGACGTGAAGCT
AATGCTGGGTGGAGCCACCCTGCTGAACGCATCATCAGCACCAGCACCAT
CCAAAGGCAACGCTGCTCGAGCACCCGCTGCAAAAACTGTAACCGGCTCT
AATTTTAATAAACACCCCGGCTAA
back to top