mRNA_S-ischiensis_contig108.1916.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig108.1916.1
Unique NamemRNA_S-ischiensis_contig108.1916.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig108contigS-ischiensis_contig108:96812..99102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size155
Cds size153
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig108.1916.1prot_S-ischiensis_contig108.1916.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig108 96814..99102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.918825-CDS-S-ischiensis_contig108:96813..968691622815571.918825-CDS-S-ischiensis_contig108:96813..96869Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 96814..96869 -
1695739777.7569442-CDS-S-ischiensis_contig108:96813..968691695739777.7569442-CDS-S-ischiensis_contig108:96813..96869Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 96814..96869 -
1622815571.93206-CDS-S-ischiensis_contig108:97425..974621622815571.93206-CDS-S-ischiensis_contig108:97425..97462Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 97426..97462 -
1695739777.765467-CDS-S-ischiensis_contig108:97425..974621695739777.765467-CDS-S-ischiensis_contig108:97425..97462Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 97426..97462 -
1622815571.943648-CDS-S-ischiensis_contig108:99042..991021622815571.943648-CDS-S-ischiensis_contig108:99042..99102Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 99043..99102 -
1695739777.7748601-CDS-S-ischiensis_contig108:99042..991021695739777.7748601-CDS-S-ischiensis_contig108:99042..99102Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 99043..99102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig108.1916.1

>prot_S-ischiensis_contig108.1916.1 ID=prot_S-ischiensis_contig108.1916.1|Name=mRNA_S-ischiensis_contig108.1916.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=51bp
KLQVTLAPFNKRSTEDGRSTLAQQSGDEKKAGASHQHHLYGYNKQAGGKR
S
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mRNA from alignment at S-ischiensis_contig108:96812..99102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig108.1916.1 ID=mRNA_S-ischiensis_contig108.1916.1|Name=mRNA_S-ischiensis_contig108.1916.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2291bp|location=Sequence derived from alignment at S-ischiensis_contig108:96812..99102- (Schizocladia ischiensis KU_0333)
AAGCTCCAGGTTACCCTGGCCCCATTCAACAAACGTAGCACGGAGGACGG
GCGCAGCACGGTGAGCATCGCCCTAGTGGGTTGGTGACTTCTCCTGTCGT
CGGACAAAGAATGGCACACCCGTATAAAATAGCACAAACAGCGGAAGGCA
TGAGAATCGAGGCTGGGCCGCAGCAGCACTCCAACATTTCCAGATGTGGA
GCCACGAAAAAGCACATCAGACCGTTGCCTGGGGTGAGAAGGGGAGGCGC
GGCAGGCTGCAAAGCCTCATGCAGTATACACAACCTTTGAAGTACTTGTT
GGAAGAATATGAGTACTCGATGCCGTGGCACACCACCACACATGCTCTCC
ATCTGTGGGTGCATAAATCAGCATGCCCCTGAAATGTCGGCAAACCTGTC
CTCAAAGTCGTATGTATGATAGAGTAGGCTACCTGTTGTTTGAGATGTGC
GGAATGTGCCTTGTGCATGGAACACAGTAACAAGCGCGCATTGGAATGCA
CGTGCCGCATCTCGTGGTATGGCTGTATTGTTAAGTGCTGCGGCTGTCGC
CGTTTGCGAGGTGCGGAATGTGCATATACTAGTACCCATGTACTCACAGG
AGGGCGAACCCAAAGTTTCGACTTAGGGCTGTCGGCAATGCACGCAAGGT
TATGTCGCAAGCCAAGCCAATTAGTACATACATGTATATATACTAACATC
ATGCGTGCCGTAGTCCTGAGACCAATGACCACACGCCTCAACCGAGACGG
AGGAGATACCGTGTGTACTAATGCCGTACAGAGAGCTACCCCGTCCTGCG
CATGCCACTAGTTGTCAGGACAACATACTATACTTGCTGGGCAGCCGGCC
AGTTCCCACAAGGCAGCCTTGTGGCCGAGTATCCCTACTACGCCAGGATG
GAGTGTGCCAGCTTTTCACTGGACAGGACTCGTACATGCATACTGTACTA
CTGTAGCCTGTTGTACCGCAACAAACCTGTTCCAGCAGATGGGCGCACGT
GTGTAGAGATGTCTCGCGGTCTCGGAGCGCGGCGGCCAATGCAGGTGCTG
TGAAGCTGTCCACTAGTGCACGGATGTCCTCATTCTTGTCCTGCAAATCA
CAAGACGTGCGCACGTGCCTTACACGGGATGGAAAGGAGGAGCCTACAGG
AACTTAACCGTATAACACGCCTGGTCCTGCCTACGGTATCATCACTTGCA
TTCGACAGTACTGTATGTACGAGTACACGAGTACAGTACGAAACCTGGAA
GGCCTGGATCGCCATGCAGACAAAACCTGATCATGTACTGAGTACTCACA
GTACCTACTCGAGCACTACGCGTGCACCGTACTTACTGATAGATGTGAAA
TGCACTAAATAACCAACTGGACATATCTCTAACATGCAGAAACGCGCCGT
GGCACTCAACGGATGAACACAGCCGAGCACATAAGTAGTCGCCGCGGGGG
CTGATCTGTGTCAGGGGCAGGGTGTAAACGCAGTCATACAGCGAAGAACA
CGGACTCACCTCCTTCAGGACACCAAACCCGTGCACGCCGGATGTATCCT
TTTGGCTGTCCATCTCCCCGTGCAATTCAATCACTGCCCCCTCACGCTCT
GATTTGTCTCCCTGCTCCCATCGATGTTCTGGCGCACCAGTTAGCACAGC
AATCGGGTGACGAGAAAAAGGCCGGAGGTGAGACACTGGTGGCCCAGTGG
CCCACCATCTCCTCGGGCTGAAGACCTGCGCACGTCGAACATCGCTAGGC
ACCGCTCGAATCGTGGATTCTGAACCACGCAAAAACCGTACCGGAACACA
ATGACTCGGTTCTTCCAAATGATTTCACCTGTCCATTGCTTTACAAGCGT
CTGTGACATAGGTCTGCCCTACCACTTGCGCTCAATGTTCTGTGATATTC
TGTGGCTTGGTCACATATGTCGAGGTTAATTATTGGACCAAAGAGTGAAC
AGCAATAACTTCGATTTGGAGCATTTTACTAGGCTATCGATTGAGCCAGG
TCCATTAACTTGCACATTCCATCGTGCTGTCGACGATGGTTTTTGATTAA
TCAGTAAAACTGCAGCAGTTGCCAACATTTGAATTTATCGCCGCACCTGT
TACGAGTTCGTCCCCAGCTCCGGTGGTCCACAATTTTTGCGCCTGCTTCG
CAGCCTCGCTGACATGAACATATGCACATTGTACGCAATGGGGCCGACGA
AAACACTGCCGTCGAGGGGCTCTTGCAACACAGCAAGCCATCAACATCAC
CTCTATGGCTACAACAAACAAGCGGGGGGCAAACGCAGCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig108:96812..99102-

>mRNA_S-ischiensis_contig108.1916.1 ID=mRNA_S-ischiensis_contig108.1916.1|Name=mRNA_S-ischiensis_contig108.1916.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=306bp|location=Sequence derived from alignment at S-ischiensis_contig108:96812..99102- (Schizocladia ischiensis KU_0333)
AAGCTCCAGGTTACCCTGGCCCCATTCAACAAACGTAGCACGGAGGACGG
GCGCAGCACGAAGCTCCAGGTTACCCTGGCCCCATTCAACAAACGTAGCA
CGGAGGACGGGCGCAGCACGTTAGCACAGCAATCGGGTGACGAGAAAAAG
GCCGGAGTTAGCACAGCAATCGGGTGACGAGAAAAAGGCCGGAGCAAGCC
ATCAACATCACCTCTATGGCTACAACAAACAAGCGGGGGGCAAACGCAGC
CAAGCCATCAACATCACCTCTATGGCTACAACAAACAAGCGGGGGGCAAA
CGCAGC
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