prot_S-ischiensis_contig78.19054.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig78.19054.1
Unique Nameprot_S-ischiensis_contig78.19054.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length172
Homology
BLAST of mRNA_S-ischiensis_contig78.19054.1 vs. uniprot
Match: A0A835ZIC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIC9_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.660e-19
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = 0
Query:   26 LSRGQRKRALKRSLLVKKNGLASLSRRATKPKAA-GRVDMETLQSSLDSVKDNVVASHSRRDTQKFG-------RVVTNKGKRDLVTAELGQMDAVLGNASFQRDPIAAIQQHLRYTIPVTESSQRVTSAKQDRTGQKKTKK 159
            LSRGQRKRA KR+ LV+K  L + +    K +AA G   M  L  +L    ++      +R   K         R++TNKGKR +   EL Q+ AVL N SF+RDP AAIQ H++ T+PV E++    ++ Q R G+KK KK
Sbjct:   31 LSRGQRKRATKRAALVRKRTLVTANVEQRKQEAAKGLGSMGGLMETLTGAAEDASGPSQKRKAAKAQLRSAPARRIITNKGKRSVAEKELAQLAAVLANESFKRDPFAAIQAHMKLTLPVEEAAAAANTSGQTRAGRKKGKK 172          
BLAST of mRNA_S-ischiensis_contig78.19054.1 vs. uniprot
Match: D7G8P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P4_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.750e-13
Identity = 64/161 (39.75%), Postives = 89/161 (55.28%), Query Frame = 0
Query:   27 SRGQRKRALKRSLLVKKNGLAS--LSRRATKPKAAGRVDMETLQSSLDSVKDNVVASHSRRDTQKFGRVVTNKGKRDLVTAELGQMDAVLGNASFQRDPIAAIQQHLRYTI----PVTESSQRV-----TSAKQ------DRTGQKKTKKKTFRGKLAKMR 170
            SRGQRKRALK++ L+KK GL S  + +R T         + T +  + S + ++ A  S      F RV +NKGKR L+T+E+GQ++AVL   SFQ+DP AAIQ HLR T     P+ +   R       SAK       +  G +K K K ++ + AKMR
Sbjct:   39 SRGQRKRALKKASLIKKIGLTSKHVRQRRTDEDEKQVPSVATDEKGIPS-RPSLAAKGSA-----FQRVSSNKGKRSLMTSEMGQINAVLSAPSFQQDPFAAIQAHLRQTALPTPPMADCKARKPGKGKVSAKSVGQHAGETRGDRKPKAKPYKARNAKMR 193          
BLAST of mRNA_S-ischiensis_contig78.19054.1 vs. uniprot
Match: A0A7S3XU29_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU29_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 1.160e-9
Identity = 41/121 (33.88%), Postives = 67/121 (55.37%), Query Frame = 0
Query:   26 LSRGQRKRALKRSLLVKKNGLASLSRRATKPKAAGRVDMETLQSSLDSVKD-----NVVASHSRRDTQKFGRVVTNKGKRDLVTAELGQMDAVLGNASFQRDPIAAIQQHLRYTIPVTESS 141
            LSRGQRKRA +R   +KK  L + +      K+   +  + +  SL S+KD     +++AS   +  +   +VV NK K+ +   E+  +  VL +  F +DPIAAIQ+HLR ++P  + +
Sbjct:   74 LSRGQRKRAARRERFLKKMNLVNQA------KSVEELSKQGVLGSLGSIKDVLLNSDIIASSKTKAAKAPQKVVHNKAKKTVAAQEVQHLSLVLKHPQFMKDPIAAIQEHLRNSLPTEDGA 188          
BLAST of mRNA_S-ischiensis_contig78.19054.1 vs. uniprot
Match: A0A7S3PZY6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZY6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.990e-6
Identity = 46/141 (32.62%), Postives = 70/141 (49.65%), Query Frame = 0
Query:   26 LSRGQRKRALKRSLLVKKNGLA-SLSRRATKPKAAGRVDMETLQSSLDSVKDNVVAS--------------HSRRDTQKFGRVVTNKGKRDLVTAELGQMDAVLGNASFQRDPIAAIQQHLRYTIPVTESSQRVTSAKQDR 151
            +SRGQRKR  KR   +++  +  S  +  T  +  GR+D       LD++KD + A+                 + +Q+     TNK K+DL   EL  M  VL + +FQ +P A +QQHL+ T+  +   Q +  AKQDR
Sbjct:   59 MSRGQRKRLAKREQYLRREKMVMSTLKLKTLEEQKGRLD------GLDAIKDALTATIVNKGRKSSAGAGADDTKTSQENEVTKTNKAKKDLAQKELTHMKLVLQHPTFQSNPFATMQQHLKNTLVQSAERQEIL-AKQDR 192          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig78.19054.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZIC9_9STRA2.660e-1941.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G8P4_ECTSI1.750e-1339.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XU29_HETAK1.160e-933.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3PZY6_9STRA1.990e-632.62Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028160Ribosome biogenesis protein Slx9-likePFAMPF15341SLX9coord: 27..132
e-value: 7.2E-10
score: 39.4
NoneNo IPR availablePANTHERPTHR31109FAMILY NOT NAMEDcoord: 30..161
NoneNo IPR availablePANTHERPTHR31109:SF2PROTEIN FAM207Acoord: 30..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig78contigS-ischiensis_contig78:34468..34983 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig78.19054.1mRNA_S-ischiensis_contig78.19054.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig78 34232..36355 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig78.19054.1 ID=prot_S-ischiensis_contig78.19054.1|Name=mRNA_S-ischiensis_contig78.19054.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=172bp
MKEKKARRFRATTPAASSGQSKAGPLSRGQRKRALKRSLLVKKNGLASLS
RRATKPKAAGRVDMETLQSSLDSVKDNVVASHSRRDTQKFGRVVTNKGKR
DLVTAELGQMDAVLGNASFQRDPIAAIQQHLRYTIPVTESSQRVTSAKQD
RTGQKKTKKKTFRGKLAKMRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028160Slx9-like