mRNA_S-ischiensis_contig78.19096.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig78.19096.1
Unique NamemRNA_S-ischiensis_contig78.19096.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig78.19096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig78contigS-ischiensis_contig78:389573..390907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size490
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817238.8357217-CDS-S-ischiensis_contig78:389573..3899131622817238.8357217-CDS-S-ischiensis_contig78:389573..389913Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 389574..389913 -
1695740960.4681437-CDS-S-ischiensis_contig78:389573..3899131695740960.4681437-CDS-S-ischiensis_contig78:389573..389913Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 389574..389913 -
1622817238.8522253-CDS-S-ischiensis_contig78:390758..3909071622817238.8522253-CDS-S-ischiensis_contig78:390758..390907Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 390759..390907 -
1695740960.4782112-CDS-S-ischiensis_contig78:390758..3909071695740960.4782112-CDS-S-ischiensis_contig78:390758..390907Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 390759..390907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig78.19096.1prot_S-ischiensis_contig78.19096.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig78 389574..390907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig78.19096.1

>prot_S-ischiensis_contig78.19096.1 ID=prot_S-ischiensis_contig78.19096.1|Name=mRNA_S-ischiensis_contig78.19096.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=163bp
VGAVSLNGTGHIAVKGMGPLEYSLLGMAMLFVLGGASGLCRLLLALCIMC
YQRSHRSRSMRSLRSYKYGTEGVGSGNGRGRGWPMGSSSLAAAAATAASS
GKGWLTGTPPNSTPATATAEATRATTTTTAATPPRTRAAKTAAAAAAATA
AAAAAAADGGSSS
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mRNA from alignment at S-ischiensis_contig78:389573..390907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig78.19096.1 ID=mRNA_S-ischiensis_contig78.19096.1|Name=mRNA_S-ischiensis_contig78.19096.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1335bp|location=Sequence derived from alignment at S-ischiensis_contig78:389573..390907- (Schizocladia ischiensis KU_0333)
GTCGGCGCCGTGAGCCTCAACGGGACAGGGCACATCGCGGTCAAGGGCAT
GGGGCCCCTGGAGTATTCCCTGCTCGGGATGGCCATGCTGTTTGTCCTCG
GGGGCGCGTCGGGGCTCTGCCGCCTGCTGCTGGCGCTGTGCATCATGTGG
TGAGCGCCGCCGCCGCCGCCGCCACCGTTCCACGCGAGCATCGGGCAGAC
TATCCGCATGCGTGCATGCTCTCCTTGCTCGTCCGGCTCCCGAGGGCTTT
TGGTGATGGGAGCCGTTTTCATGGGGGCCTCTTGGGGGGGGGGGGTGCGA
ACGAAGGCGTGGGTGCACTTGCGGCCCGTTTTTTGTTGAGGTGGGCCGAG
ATTGGATGTCTTGTGTGTTGAGCCGGTTGCTTGTTGCCACCCGTGGTCAC
GTGTCCACGCAGCTTTCCGTGCTTAGCCCGAGGCTTTCGCCCGCGCGACC
TCTTCGGCGGACGGAGAGCGTGCGTGTTTTGTTTTTTTTACGTGCGGGAG
GATTCGTAAGGTTTGTGGCGCGACGACCGAGGTTGCGGGGCGGGAGGGGA
GGGCGATGCTTGGCTTGTTGGTGGAACAATGGCACGTCGAAGTGCTGCAT
ACTTTGCACAGTCACTGAAGTTGCTTACAGCTTCGGGTTTGCCCTCCGAC
AGCAGTAAGTTAGCCACGGACTCTCACCTATACTACTCGAGTATGTGTGT
ATAGATATAGTCCAACCTTTTGAGGACTACCAACTATATTACTTCTATGT
ATATAGTCAAGTAAAAAAGGGTTTCCCTCTGAATAGTCAAGTAAAAAAGG
GTTTCCCTCTGACGATCGGACAAGCAAGTACTCACGTAAAGACTGACCTG
CAGAGAGGGCCCAGGATGACCAGCACGCGCCCCGCTGCTAGGCTATTCTG
TGCCTCCTCAGTCTCTTCTCTCTACCTGCCCCCCGATCCCGCCCTTCCCC
CCATCCCTCCCCCACCCCGCCCTGCCCCCCCTCCCCCGCACCAGTTACCA
ACGCAGTCACCGGTCACGGAGCATGAGGAGTTTACGGTCCTACAAGTACG
GCACGGAGGGCGTTGGCAGCGGCAACGGCCGCGGCCGCGGGTGGCCCATG
GGCTCCAGCTCGTTGGCGGCGGCGGCGGCAACCGCAGCATCATCAGGCAA
AGGCTGGCTCACGGGCACGCCACCAAACTCCACACCCGCAACGGCGACAG
CAGAAGCCACAAGAGCAACAACAACGACAACAGCAGCAACACCTCCAAGA
ACACGAGCGGCAAAGACAGCGGCGGCCGCCGCTGCCGCCACAGCCGCCGC
AGCGGCAGCGGCGGCTGATGGGGGCAGCAGCAGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig78:389573..390907-

>mRNA_S-ischiensis_contig78.19096.1 ID=mRNA_S-ischiensis_contig78.19096.1|Name=mRNA_S-ischiensis_contig78.19096.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=978bp|location=Sequence derived from alignment at S-ischiensis_contig78:389573..390907- (Schizocladia ischiensis KU_0333)
GTCGGCGCCGTGAGCCTCAACGGGACAGGGCACATCGCGGTCAAGGGCAT
GGGGCCCCTGGAGTATTCCCTGCTCGGGATGGCCATGCTGTTTGTCCTCG
GGGGCGCGTCGGGGCTCTGCCGCCTGCTGCTGGCGCTGTGCATCATGTGG
TCGGCGCCGTGAGCCTCAACGGGACAGGGCACATCGCGGTCAAGGGCATG
GGGCCCCTGGAGTATTCCCTGCTCGGGATGGCCATGCTGTTTGTCCTCGG
GGGCGCGTCGGGGCTCTGCCGCCTGCTGCTGGCGCTGTGCATCATGTGTT
ACCAACGCAGTCACCGGTCACGGAGCATGAGGAGTTTACGGTCCTACAAG
TACGGCACGGAGGGCGTTGGCAGCGGCAACGGCCGCGGCCGCGGGTGGCC
CATGGGCTCCAGCTCGTTGGCGGCGGCGGCGGCAACCGCAGCATCATCAG
GCAAAGGCTGGCTCACGGGCACGCCACCAAACTCCACACCCGCAACGGCG
ACAGCAGAAGCCACAAGAGCAACAACAACGACAACAGCAGCAACACCTCC
AAGAACACGAGCGGCAAAGACAGCGGCGGCCGCCGCTGCCGCCACAGCCG
CCGCAGCGGCAGCGGCGGCTGATGGGGGCAGCAGCAGCTTACCAACGCAG
TCACCGGTCACGGAGCATGAGGAGTTTACGGTCCTACAAGTACGGCACGG
AGGGCGTTGGCAGCGGCAACGGCCGCGGCCGCGGGTGGCCCATGGGCTCC
AGCTCGTTGGCGGCGGCGGCGGCAACCGCAGCATCATCAGGCAAAGGCTG
GCTCACGGGCACGCCACCAAACTCCACACCCGCAACGGCGACAGCAGAAG
CCACAAGAGCAACAACAACGACAACAGCAGCAACACCTCCAAGAACACGA
GCGGCAAAGACAGCGGCGGCCGCCGCTGCCGCCACAGCCGCCGCAGCGGC
AGCGGCGGCTGATGGGGGCAGCAGCAGC
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