mRNA_S-ischiensis_contig76.18981.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig76.18981.1
Unique NamemRNA_S-ischiensis_contig76.18981.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig76.18981.1 vs. uniprot
Match: A0A7S1B3V4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3V4_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.890e-32
Identity = 63/98 (64.29%), Postives = 81/98 (82.65%), Query Frame = 3
Query:  156 YVRELVESKPVVVFSKTYCPFCTKAKRALAAVGA-EYELIELDQTSNGSAIQAALASLTGQRTVPNVFVGGQSIGGGDETEALRRTGKLQTMTQQAVA 446
            Y+++ + S  VVVFSKTYCPFCTKAKR+LA VG   ++ +ELDQ ++GS+IQ+ L SLTGQRTVPNVF+GG+SIGGGD+T AL ++GKL+TM Q A A
Sbjct:   12 YIQDTIGSNKVVVFSKTYCPFCTKAKRSLANVGCTNFKSVELDQMADGSSIQSGLLSLTGQRTVPNVFIGGKSIGGGDDTAALEQSGKLKTMLQAAGA 109          
BLAST of mRNA_S-ischiensis_contig76.18981.1 vs. uniprot
Match: D8LC00_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC00_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.340e-31
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = 3
Query:  138 MGGEQQYVRELVESKPVVVFSKTYCPFCTKAKRALAAVGAEYELIELDQTSNGSAIQAALASLTGQRTVPNVFVGGQSIGGGDETEALRRTGKLQT 425
            M      V E+V    VVV+SKTYCPFCTKAK+AL  VGA+YELIELD+  NGSAIQ AL S+TGQR+VPNVF+GG SIGGGD+T  L+++G+L T
Sbjct:    1 MSEHVDAVNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDEVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLT 96          
BLAST of mRNA_S-ischiensis_contig76.18981.1 vs. uniprot
Match: G4WMT5_WOLAR (Putative glutaredoxin-like protein n=1 Tax=Wolffia arrhiza TaxID=161111 RepID=G4WMT5_WOLAR)

HSP 1 Score: 114 bits (286), Expect = 1.150e-27
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 3
Query:  150 QQYVRELVESKPVVVFSKTYCPFCTKAKRALAAVGAEYELIELDQTSNGSAIQAALASLTGQRTVPNVFVGGQSIGGGDETEALRRTGKLQTMTQQAVA 446
            QQ  +E++ S PVVVFSKTYCP+CT+ K+ L  +GA + +IELD+ ++GS +QAALA LTGQRTVPNVF+GG+ IGG D    + R GKL  +  +A A
Sbjct:    3 QQKAQEIIASDPVVVFSKTYCPYCTRVKKLLTELGARFNVIELDRENDGSQVQAALAGLTGQRTVPNVFIGGKHIGGCDTLTEIHRGGKLVPLLTEAGA 101          
BLAST of mRNA_S-ischiensis_contig76.18981.1 vs. uniprot
Match: A0A834TC98_9FABA (Glutaredoxin n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TC98_9FABA)

HSP 1 Score: 114 bits (286), Expect = 1.220e-27
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:  162 RELVESKPVVVFSKTYCPFCTKAKRALAAVGAEYELIELDQTSNGSAIQAALASLTGQRTVPNVFVGGQSIGGGDETEALRRTGKLQTMTQQAVAAMAAR 461
            +E+VE+ PVVVFSKTYCPFC   K+ L  +GA ++ IELD  S+GS IQ+ALA  TGQRTVPNVF+GG  IGG D T AL   GKL ++   A A  AA+
Sbjct:    8 KEIVETNPVVVFSKTYCPFCVDVKKLLTNLGANFKAIELDSESDGSEIQSALAEWTGQRTVPNVFIGGNHIGGCDSTTALHNQGKLVSLLTSAGAITAAK 107          
BLAST of mRNA_S-ischiensis_contig76.18981.1 vs. uniprot
Match: A0A200RDG4_9MAGN (Glutaredoxin n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200RDG4_9MAGN)

HSP 1 Score: 114 bits (285), Expect = 1.550e-27
Identity = 57/95 (60.00%), Postives = 71/95 (74.74%), Query Frame = 3
Query:  162 RELVESKPVVVFSKTYCPFCTKAKRALAAVGAEYELIELDQTSNGSAIQAALASLTGQRTVPNVFVGGQSIGGGDETEALRRTGKLQTMTQQAVA 446
            +E+V S PVVVFSKTYCPFC + KR L+ +GA ++ IELD+ S+GS IQAALA  TGQRTVPNVF+GG  IGG D T ++ + GKL  +  QA A
Sbjct:    7 KEVVSSNPVVVFSKTYCPFCDQVKRLLSQLGASFKAIELDKESDGSEIQAALAEWTGQRTVPNVFIGGNHIGGCDTTTSMHKGGKLVPLLTQAGA 101          
BLAST of mRNA_S-ischiensis_contig76.18981.1 vs. uniprot
Match: UPI0010A4FA54 (glutaredoxin n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4FA54)

HSP 1 Score: 114 bits (285), Expect = 1.650e-27
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = 3
Query:  162 RELVESKPVVVFSKTYCPFCTKAKRALAAVGAEYELIELDQTSNGSAIQAALASLTGQRTVPNVFVGGQSIGGGDETEALRRTGKLQTMTQQAVAAMAA 458
            +E+V S PVVVFSK+YCPFC   K+ L  +GA Y++IELD  S+GS IQ+ALA  TGQRTVPNVF+GG  IGG D T AL   GKL ++   A A  AA
Sbjct:    8 KEIVSSNPVVVFSKSYCPFCVDVKKLLTKLGANYKVIELDSESDGSEIQSALAEWTGQRTVPNVFIGGNHIGGCDSTTALHNQGKLVSLLTSAGALAAA 106          
BLAST of mRNA_S-ischiensis_contig76.18981.1 vs. uniprot
Match: A0A6P3ZZT2_ZIZJJ (glutaredoxin-like n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZZT2_ZIZJJ)

HSP 1 Score: 114 bits (284), Expect = 2.170e-27
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 3
Query:  162 RELVESKPVVVFSKTYCPFCTKAKRALAAVGAEYELIELDQTSNGSAIQAALASLTGQRTVPNVFVGGQSIGGGDETEALRRTGKLQTMTQQAVA 446
            +E+V S PVVVFSKTYCP+C   K+    +GA +++IELD  S+GS IQ+ALA +TGQRTVPNVF+GG  IGG D T+AL + GKL T+  +A A
Sbjct:    7 KEIVSSNPVVVFSKTYCPYCVTVKQLFTQLGATFKVIELDTESDGSEIQSALAEITGQRTVPNVFIGGNHIGGCDNTKALHKDGKLITLLTEAGA 101          
BLAST of mRNA_S-ischiensis_contig76.18981.1 vs. uniprot
Match: A0A068U1P0_COFCA (Glutaredoxin domain-containing protein n=3 Tax=Coffea TaxID=13442 RepID=A0A068U1P0_COFCA)

HSP 1 Score: 112 bits (281), Expect = 5.900e-27
Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = 3
Query:  162 RELVESKPVVVFSKTYCPFCTKAKRALAAVGAEYELIELDQTSNGSAIQAALASLTGQRTVPNVFVGGQSIGGGDETEALRRTGKLQTMTQQAVA 446
            +E+V + PVVVFSK+YCPFC   K+ L  VGA ++ +ELD  S+GS IQAALA LTGQ+TVPNVF+GG+ IGG D T AL + GKL  +  +A A
Sbjct:    7 KEIVSANPVVVFSKSYCPFCVNVKKLLGQVGANFKAVELDVESDGSEIQAALAELTGQKTVPNVFIGGKHIGGCDATTALHQNGKLVPLLTEAGA 101          
BLAST of mRNA_S-ischiensis_contig76.18981.1 vs. uniprot
Match: A0A2U1N129_ARTAN (Glutaredoxin n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1N129_ARTAN)

HSP 1 Score: 112 bits (279), Expect = 1.150e-26
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 3
Query:  162 RELVESKPVVVFSKTYCPFCTKAKRALAAVGAEYELIELDQTSNGSAIQAALASLTGQRTVPNVFVGGQSIGGGDETEALRRTGKLQTMTQQAVA 446
            +E+V S PVVVFSK+YCP+C   K+ L   GA ++ IELDQ S+GSAIQ+AL   TGQRTVPNVF+GG+ IGG D T AL + GKL  M  +A A
Sbjct:    7 KEIVSSNPVVVFSKSYCPYCVSVKKLLTETGASFKAIELDQESDGSAIQSALHEWTGQRTVPNVFIGGKHIGGCDNTIALNQGGKLVPMLTEAKA 101          
BLAST of mRNA_S-ischiensis_contig76.18981.1 vs. uniprot
Match: A0A2P6S5M9_ROSCH (Putative thioredoxin-disulfide reductase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S5M9_ROSCH)

HSP 1 Score: 111 bits (278), Expect = 1.600e-26
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 3
Query:  162 RELVESKPVVVFSKTYCPFCTKAKRALAAVGAEYELIELDQTSNGSAIQAALASLTGQRTVPNVFVGGQSIGGGDETEALRRTGKLQTMTQQAVA 446
            +ELV S  V+VFSK+YCPFC   K+  + +G  ++ IELDQ S+GS +QAALA LTGQRTVPNVF+GG  IGG D T AL + GKL  +  QA A
Sbjct:    7 KELVSSNSVIVFSKSYCPFCVTVKKLFSEMGVNFKAIELDQESDGSQLQAALAELTGQRTVPNVFIGGNHIGGCDATTALHKEGKLAPLLTQAGA 101          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig76.18981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1B3V4_9STRA1.890e-3264.29Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
D8LC00_ECTSI2.340e-3164.58Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
G4WMT5_WOLAR1.150e-2755.56Putative glutaredoxin-like protein n=1 Tax=Wolffia... [more]
A0A834TC98_9FABA1.220e-2758.00Glutaredoxin n=1 Tax=Senna tora TaxID=362788 RepID... [more]
A0A200RDG4_9MAGN1.550e-2760.00Glutaredoxin n=1 Tax=Macleaya cordata TaxID=56857 ... [more]
UPI0010A4FA541.650e-2758.59glutaredoxin n=1 Tax=Prosopis alba TaxID=207710 Re... [more]
A0A6P3ZZT2_ZIZJJ2.170e-2757.89glutaredoxin-like n=2 Tax=Ziziphus jujuba TaxID=32... [more]
A0A068U1P0_COFCA5.900e-2757.89Glutaredoxin domain-containing protein n=3 Tax=Cof... [more]
A0A2U1N129_ARTAN1.150e-2658.95Glutaredoxin n=1 Tax=Artemisia annua TaxID=35608 R... [more]
A0A2P6S5M9_ROSCH1.600e-2657.89Putative thioredoxin-disulfide reductase n=1 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig76contigS-ischiensis_contig76:809268..810741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score110.9
Seed ortholog evalue3.7e-22
Seed eggNOG ortholog225117.XP_009334103.1
KEGG koko:K03676
EggNOG free text desc.Glutaredoxin
EggNOG OGs37V77@33090,3GJCN@35493,4JQ9R@91835,COG0695@1,KOG1752@2759
COG Functional cat.O
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlutaredoxin
Ec32 orthologEc-20_003920.1
Exons2
Model size1168
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig76.18981.1prot_S-ischiensis_contig76.18981.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig76 809405..810037 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817229.6811585-UTR-S-ischiensis_contig76:809267..8094041622817229.6811585-UTR-S-ischiensis_contig76:809267..809404Schizocladia ischiensis KU_0333UTRS-ischiensis_contig76 809268..809404 +
1695740953.1959805-UTR-S-ischiensis_contig76:809267..8094041695740953.1959805-UTR-S-ischiensis_contig76:809267..809404Schizocladia ischiensis KU_0333UTRS-ischiensis_contig76 809268..809404 +
1622817229.720371-UTR-S-ischiensis_contig76:810037..8107411622817229.720371-UTR-S-ischiensis_contig76:810037..810741Schizocladia ischiensis KU_0333UTRS-ischiensis_contig76 810038..810741 +
1695740953.2407222-UTR-S-ischiensis_contig76:810037..8107411695740953.2407222-UTR-S-ischiensis_contig76:810037..810741Schizocladia ischiensis KU_0333UTRS-ischiensis_contig76 810038..810741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817229.6941688-CDS-S-ischiensis_contig76:809404..8095971622817229.6941688-CDS-S-ischiensis_contig76:809404..809597Schizocladia ischiensis KU_0333CDSS-ischiensis_contig76 809405..809597 +
1695740953.2090228-CDS-S-ischiensis_contig76:809404..8095971695740953.2090228-CDS-S-ischiensis_contig76:809404..809597Schizocladia ischiensis KU_0333CDSS-ischiensis_contig76 809405..809597 +
1622817229.7058182-CDS-S-ischiensis_contig76:809903..8100371622817229.7058182-CDS-S-ischiensis_contig76:809903..810037Schizocladia ischiensis KU_0333CDSS-ischiensis_contig76 809904..810037 +
1695740953.2275379-CDS-S-ischiensis_contig76:809903..8100371695740953.2275379-CDS-S-ischiensis_contig76:809903..810037Schizocladia ischiensis KU_0333CDSS-ischiensis_contig76 809904..810037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig76.18981.1

>prot_S-ischiensis_contig76.18981.1 ID=prot_S-ischiensis_contig76.18981.1|Name=mRNA_S-ischiensis_contig76.18981.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
MGGEQQYVRELVESKPVVVFSKTYCPFCTKAKRALAAVGAEYELIELDQT
SNGSAIQAALASLTGQRTVPNVFVGGQSIGGGDETEALRRTGKLQTMTQQ
AVAAMAAR*
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mRNA from alignment at S-ischiensis_contig76:809268..810741+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig76.18981.1 ID=mRNA_S-ischiensis_contig76.18981.1|Name=mRNA_S-ischiensis_contig76.18981.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1474bp|location=Sequence derived from alignment at S-ischiensis_contig76:809268..810741+ (Schizocladia ischiensis KU_0333)
GAGCAACCTGACACGACTCTCGCTTCCAGAAGCCCTGGCACGAAGCCGTG CGCCCCCCTTGTCACAACACAGGAGCACGTTCGAGAATCGTACGGGTAGT TGAGCCGAGGCACACGGAAACAAGGACGTTTGAAACCATGGGGGGAGAGC AGCAGTATGTGCGGGAGCTCGTCGAGTCCAAGCCCGTCGTGGTCTTCTCC AAGACCTACTGTCCCTTCTGCACCAAGGCCAAGAGGGCGCTGGCGGCGGT GGGCGCGGAGTACGAGCTGATCGAATTGGATCAGACGAGCAATGGGTCCG CTATCCAAGCGGCTCTGGCTTCGCTGACAGGCGAGTGACCTCATCAAAGC CCACCCGGCGCACTGGCGGGACGTTTGGTTTTCTGGTACGGCGACTGCCG TGGTCCCTCGCGAGCGAGTTCTTCATTGCCTGGGAACCCTGCCAAACTCT CGCTCTTTCCCAGGCCCCCCCTTGCCATCCGGCTGGCTGTTTTTATTTTG TTTGGTAGGTACTCGCTACACGAGCAGGAGCAAAGACGAGGATCGTTCGG GTCCAGGGCATGCACAGAGACGCGAGTACACACACTCGCTTACATACACG CTGTTGTTTGGACTGCCCGCCGCCGCGAACGAACAGGGCAACGAACAGTC CCCAACGTGTTCGTGGGAGGCCAGTCCATCGGCGGAGGGGACGAGACCGA GGCTCTGCGGAGGACGGGGAAATTGCAGACAATGACTCAGCAGGCTGTGG CTGCAATGGCCGCGCGGTGACGAGAGGGCAACTGCTGTAGCTTCCAGCAG GGGCAATTTTCCGCCGCTGGATGAGCTCAGGCTGTCACTTTGCAACCAAC TGGCGAATTGTGAGTCGGACGACTAGGCACTACCGTAACGTTTGTTTTTC AGTTTGGTGTGACAAGCCGGTCACTTTTCCACCAACTGGTGGAGTTGTGA GTCGGACGACGACAAAGGCACTACCGTAAACGTTTGCTTTCGGTTTTGAT GCGGGAATGGAGGCGTGCGAGGAACGGTGCCTGTTGTAGTGCCCTCCCAG CAGGGCGACAGCCTCCAGGGGCTTGTCGCCGGGCATGGTCGCCGTGCAGG CTTGCGACGTAGAGCAGAGTTCCTTTTGCAGGTTACAAGTCGAAAGAGTG TAGGGATAAATTTGCCCCGCATCTCCTACAAGTAGTCCTCTCGCTTGCTT CCGGGCTGCAGCCGTTGGGGCTCTCACACACCCCTGGAGGTTACCCCAGC TACAGTAAGTGGGATCTCTGTTTGGTGTGGTTCTTTGTGGGAGATGTGGC AACACCCCAAGCGGTGGGGTGGAACGCCACTGTGTGCAGTTGTGTGTTGT GCTCTTGTAGAACAGTTGTGTCGCAGCAGTGAGTGCAGGCACGGCTTGCT GTGTACGTAACTCCGAACTGGGTTGCTACTGCTGTAGAAATCTGACGATG AATAATGGATATTGTGTGATCTGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig76:809268..810741+

>mRNA_S-ischiensis_contig76.18981.1 ID=mRNA_S-ischiensis_contig76.18981.1|Name=mRNA_S-ischiensis_contig76.18981.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig76:809268..810741+ (Schizocladia ischiensis KU_0333)
ATGGGGGGAGAGCAGCAGTATGTGCGGGAGCTCGTCGAGTCCAAGCCCGT
CGTGGTCTTCTCCAAGACCTACTGTCCCTTCTGCACCAAGGCCAAGAGGG
CGCTGGCGGCGGTGGGCGCGGAGTACGAGCTGATCGAATTGGATCAGACG
AGCAATGGGTCCGCTATCCAAGCGGCTCTGGCTTCGCTGACAGATGGGGG
GAGAGCAGCAGTATGTGCGGGAGCTCGTCGAGTCCAAGCCCGTCGTGGTC
TTCTCCAAGACCTACTGTCCCTTCTGCACCAAGGCCAAGAGGGCGCTGGC
GGCGGTGGGCGCGGAGTACGAGCTGATCGAATTGGATCAGACGAGCAATG
GGTCCGCTATCCAAGCGGCTCTGGCTTCGCTGACAGGGCAACGAACAGTC
CCCAACGTGTTCGTGGGAGGCCAGTCCATCGGCGGAGGGGACGAGACCGA
GGCTCTGCGGAGGACGGGGAAATTGCAGACAATGACTCAGCAGGCTGTGG
CTGCAATGGCCGCGCGGTGAGGCAACGAACAGTCCCCAACGTGTTCGTGG
GAGGCCAGTCCATCGGCGGAGGGGACGAGACCGAGGCTCTGCGGAGGACG
GGGAAATTGCAGACAATGACTCAGCAGGCTGTGGCTGCAATGGCCGCGCG
GTGA
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