mRNA_S-ischiensis_contig107.1894.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig107.1894.1
Unique NamemRNA_S-ischiensis_contig107.1894.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:33850..36151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size277
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1894.1prot_S-ischiensis_contig107.1894.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig107 33850..36122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.7576878-CDS-S-ischiensis_contig107:33849..339631622815569.7576878-CDS-S-ischiensis_contig107:33849..33963Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 33850..33963 -
1695739776.3617175-CDS-S-ischiensis_contig107:33849..339631695739776.3617175-CDS-S-ischiensis_contig107:33849..33963Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 33850..33963 -
1622815569.7690475-CDS-S-ischiensis_contig107:35482..355361622815569.7690475-CDS-S-ischiensis_contig107:35482..35536Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 35483..35536 -
1695739776.369522-CDS-S-ischiensis_contig107:35482..355361695739776.369522-CDS-S-ischiensis_contig107:35482..35536Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 35483..35536 -
1622815569.778555-CDS-S-ischiensis_contig107:36044..361221622815569.778555-CDS-S-ischiensis_contig107:36044..36122Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 36045..36122 -
1695739776.3773222-CDS-S-ischiensis_contig107:36044..361221695739776.3773222-CDS-S-ischiensis_contig107:36044..36122Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 36045..36122 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.7880194-UTR-S-ischiensis_contig107:36122..361511622815569.7880194-UTR-S-ischiensis_contig107:36122..36151Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 36123..36151 -
1695739776.3906877-UTR-S-ischiensis_contig107:36122..361511695739776.3906877-UTR-S-ischiensis_contig107:36122..36151Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 36123..36151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig107.1894.1

>prot_S-ischiensis_contig107.1894.1 ID=prot_S-ischiensis_contig107.1894.1|Name=mRNA_S-ischiensis_contig107.1894.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=82bp
MPVVYRDETRREDELEEEDIKVAVHEAKPLELEGATWRQMRVGQVEAGEL
LEGSGGWLGPSGWVGSLLPQSCRAVLQQLQTG
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mRNA from alignment at S-ischiensis_contig107:33850..36151-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig107.1894.1 ID=mRNA_S-ischiensis_contig107.1894.1|Name=mRNA_S-ischiensis_contig107.1894.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2302bp|location=Sequence derived from alignment at S-ischiensis_contig107:33850..36151- (Schizocladia ischiensis KU_0333)
GGCAACCATCATTGCCGCGTCTGCCCCTCATGCCCGTTGTTTACCGCGAC
GAGACGCGGAGAGAGGACGAGCTCGAGGAGGAGGATATCAAGGTCGCCGT
TCACGAGGTGCTGACGCTTTCGTGCCTGTTATTTCGTGTCCTGTGCAACG
TGCGCGGCCCTTGCCAGCCGCTCCGCGCAACCAATTCCATTGAGTGGCAT
CGCAAGCAGGTCGCCGATTCGTCCGTTCTGCTTGGCGGCCAAGAAAAGCC
CTCTTTTTTAGTTCAGGCTCCGCAGATCGCGTGTTTTTCCCTCCAGCAAA
TGGGCAATTTGGCGCCACTGGTAGAATATTCACGTGCGCCAAGTAGTCAT
GTTTGCACATTTGCAACTAACATGCTGATACACAAACTTGTTTACCTTCG
ACAACACTATGGATTGTGCGACGCAGTAAACCATTCAGGGCCTGCACGCG
TTACATATACGTGTAGACAGTACATGAGTTGCACACAGTAGGACTTGACA
TGATGACTAGTATACTGTGCTCTAGCGCGCGACCTTCTCTATGTGAACCC
GGAGTTCCTGGACCATCGACTAGACGAGCACTTAGAGCACTTGTAAAATA
TGGAAACCGGCACAGGCGAAACCTCTGGAGCTGGAGGGTGCCACATGGAG
GCAGATGCGGGTTGGTCAGGTGAGTTGACTTAGAGTTAGGGCTTTGAAGT
TGTCCTGGTACTGTACAGTACTTCGAAGTACAGTACTTAGTACTATCTTC
GGGTGCGGGCGATAGTATTGCCAGTGCATTGCAGATCCAACATGAGAAGC
ACAGCCATGTCAGGTTGTGTGAAGGTAAACTGTGGTAAGGTACAGTAGTA
CTCCTGCTTTGTATATGTCATACACGTACACTGTACTCACACGGCTGAAC
ATTCGTCCCATGGGTGACGGCTGTCTCAGGTTGTGTGAAGGTAGTTGTGG
TAAGGTAGTACTCCTGCTTTGTATACAAGTATGTCATACACGTTCACTCT
TACTCTGTGCTCAGTCGTCCCATGGGTGATGGCCTCTGTCGTCATGGCGC
AGAGACGTCACTGCTGGGGCCGCTGGCGGAAACACTCTACTACTTCGAAG
TACTGTAGTTGCAGTGACGTAGCATTGAAAGGTAACGTATGTGTCGAAAG
AGTGCTTTCTATGTGTCATACACGTGCACTGTGCTCACACAGCTGTACAG
TTGTCCCATGGGTGATGGCTTTCTCGTCATGGCTGAGACGTCGCTGCTGG
GGTCGCTGGCAGAAGCGCTCTACTTCCCTGGAAGTACAATACGACTAAGT
AGCAAGTACTGTAGTTGCAGTAAAGTAGCATTGCACTATAGCGTATTTGT
CAAAAGAGTTGCATGTACTAATGAACTGCATCATTCGACATACTATAGCC
ATTTTGAGCATGACCCGTGCATGGTTTGCTGTACATCAGGTAGAGAACAA
TAATGTTACATTGCGTAGAGCTGTACAGTAGTAGAAGACACTTTTTATTC
CGAGTGTATGTCAGTGCCAAGCCTTCTGGGGGAGTTGTCTGTCTTCGCTG
TTGCTGTAAATTGTACTGTAGAATACTTTGAAGTACCACTATGAAACGAA
CCTGCTCCGTGTTTGTACAAAGCGATTTGTCGTAAGTCTCGTTACGTGTG
AGACAAGCACAGCAGAGTACACACACATTAATATAGAACCTGGCCGTGCC
AAGTGCAGCAACGTACAATAATCGTGCTCACTTGCATGGCCGAGTAAACT
ACTTCCGGTTTGCCCTTCCTCTGGAGTAGCGTAGTCATTGGGTCATTGCA
CGCCTAACCCTAGCCTAAGCATTGTTGTACCCTGCTAGGTACAGTGTGTA
CTCATGGCGGATGAGGATCCCATCCTGTGCTTGCCACCGACTCGAGCCAG
TATACAGTACAGAACATACTCGTGCTCACATGCATGGCCGAGTACACTAC
TTGAGGTTTGCCCTCCGTCTGGAGTACCGGAGGATAGTCATTGGGCCATT
GCACACCTAACCCTAACCTAGGCAACACTCAGCACATGATTTCCCATGCA
CATGCTCCATACAAGTCCCATTTCTAAATCGCGTGCTTCACAAGCTGCAG
TTCTCCCACTACGAGAAAGACCGGTTAAGTGTTAAACTGGTAGGCCTTGC
CAGTTCACAACTCTACTTATCGCCTTGCCTCTCAACAGGTGGAAGCGGGT
GAGCTGCTGGAGGGCAGCGGGGGGTGGCTGGGACCCTCCGGCTGGGTAGG
CAGCCTCCTGCCTCAGAGTTGCCGCGCAGTGCTCCAGCAGTTGCAAACCG
GC
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Coding sequence (CDS) from alignment at S-ischiensis_contig107:33850..36151-

>mRNA_S-ischiensis_contig107.1894.1 ID=mRNA_S-ischiensis_contig107.1894.1|Name=mRNA_S-ischiensis_contig107.1894.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=492bp|location=Sequence derived from alignment at S-ischiensis_contig107:33850..36151- (Schizocladia ischiensis KU_0333)
ATGCCCGTTGTTTACCGCGACGAGACGCGGAGAGAGGACGAGCTCGAGGA
GGAGGATATCAAGGTCGCCGTTCACGAGATGCCCGTTGTTTACCGCGACG
AGACGCGGAGAGAGGACGAGCTCGAGGAGGAGGATATCAAGGTCGCCGTT
CACGAGGCGAAACCTCTGGAGCTGGAGGGTGCCACATGGAGGCAGATGCG
GGTTGGTCAGGCGAAACCTCTGGAGCTGGAGGGTGCCACATGGAGGCAGA
TGCGGGTTGGTCAGGTGGAAGCGGGTGAGCTGCTGGAGGGCAGCGGGGGG
TGGCTGGGACCCTCCGGCTGGGTAGGCAGCCTCCTGCCTCAGAGTTGCCG
CGCAGTGCTCCAGCAGTTGCAAACCGGCGTGGAAGCGGGTGAGCTGCTGG
AGGGCAGCGGGGGGTGGCTGGGACCCTCCGGCTGGGTAGGCAGCCTCCTG
CCTCAGAGTTGCCGCGCAGTGCTCCAGCAGTTGCAAACCGGC
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