mRNA_S-ischiensis_contig106.1882.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1882.1
Unique NamemRNA_S-ischiensis_contig106.1882.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A6H5JVE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE7_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 1.910e-75
Identity = 133/219 (60.73%), Postives = 164/219 (74.89%), Query Frame = 1
Query:  562 NEHDDDIRQLALPGLVSLLVDPVLSLVDTAYIGR-VGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRRARRGTMAIP 1215
            ++HD  I  LALP L+SLLVDP+LSLVDTAY+GR +GA SLA+LGPCTS+FHF FNTFR+LTQSTT LVG+SLAAG+ ++AGQ+  QM  +A ++ V +   L TQ P +   MG GP + L+ EA+ YLKVR LAAPAVLLI V EGVFRGH  TR PA AAL AA  + +LDP+ +F  +MG+AGAA ATA AQY  +A Y  +LWR AR G MA+P
Sbjct:  124 SQHDGQISALALPALMSLLVDPILSLVDTAYVGRGLGAISLAALGPCTSIFHFSFNTFRSLTQSTTALVGKSLAAGNEEEAGQIVQQMYVIACVLGVGLQVTLLTQAPSILALMGAGPKTALFREASGYLKVRALAAPAVLLIMVSEGVFRGHADTRAPAVAALSAAVTNILLDPVFMFTLSMGVAGAAGATAFAQYLAVAIYGAMLWRGAREGRMAVP 342          
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A7S3XLC3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLC3_HETAK)

HSP 1 Score: 200 bits (508), Expect = 2.230e-55
Identity = 106/220 (48.18%), Postives = 137/220 (62.27%), Query Frame = 1
Query:  562 NEHDDDIRQLALPGLVSLLVDPVLSLVDTAYIGRVGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRRARRGTMAIPLP 1221
            NEHD DIR + LP LV  ++DP +SL+D+AY GR+GA+SLA+LGPCTS+FHF FNTFRALT +TT LV + +A   +++AGQV  Q ++LA  + +  +G L          MG G  SPL   A  YLKVR L AP VL +   EG+FRGH  T TP  A   AA  +  LDP+L+F+  MG++GAA AT  A+      Y  LL RR  +   A P P
Sbjct:    2 NEHDRDIRDITLPALVGAMIDPAMSLIDSAYAGRLGATSLAALGPCTSIFHFSFNTFRALTFTTTALVAKYVAMNRKEQAGQVGKQSLALALTLGLLTAGALAALATPFLRLMGVGARSPLLPHALPYLKVRALVAPVVLCMMAMEGIFRGHGDTLTPLVAGAAAAAVNFSLDPILMFRLGMGVSGAAAATCIAEVVAAGIYGFLLLRRREQFGFAPPQP 221          
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: W7TRZ3_9STRA (Mate efflux family protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRZ3_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.560e-49
Identity = 104/215 (48.37%), Postives = 129/215 (60.00%), Query Frame = 1
Query:  562 NEHDDDIRQLALPGLVSLLVDPVLSLVDTAYIGRVGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMG------MAGAATATATAQYACLATYLTLLWRR 1188
            +EHD +I +++LP L++LLVDP LSL DTAY+ R+G   LA LGPCTS+FH  FN FRA +QSTT LV  +LA  DRD+   V VQ + LA ++   +S  L  Q  R+   MG    S L      YLKVR LAAPAVL++ V EG +RG   T TP       A  + VLDP LIF+   G      +AGAA AT  AQY  L  YL LL+ R
Sbjct:  148 SEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALVLACVLGTLVSAVLNVQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFRGGWGGGRGWGVAGAAWATVAAQYVGLTAYLVLLFGR 362          
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A0G4EWE7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EWE7_VITBC)

HSP 1 Score: 181 bits (460), Expect = 4.580e-48
Identity = 103/215 (47.91%), Postives = 132/215 (61.40%), Query Frame = 1
Query:  580 IRQLALPGLVSLLVDPVLSLVDTAYIGR-VGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPAS--PLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRRARRGTMAIP 1215
            IR L++P L+  LVDP LS +D  Y+GR +GA+SLA+LGPC S+FH  F  FRAL QSTT LV R+L A D D+AG++ VQ   LA  + V I+  L      + G MG G     PL  +A  YLK R  AAP+V+   V EG FRG   T+TP  A+L+AA  + +LDP++IF    G AGAA ATA AQYA   TY  L +RR     + +P
Sbjct:  118 IRDLSVPALLGNLVDPALSTIDNIYVGRGLGATSLAALGPCISIFHVSFGIFRALMQSTTSLVARALGARDNDRAGELVVQSSFLAVGMGVIIAAALQLLCGPILGCMGVGAVGVDPLALDARAYLKARAWAAPSVVFTQVAEGAFRGFGDTKTPLFASLLAAVVNLILDPIMIFSCQWGTAGAAAATAVAQYAAALTYAVLFYRRRESMRLKVP 332          
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A4D9CNC1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNC1_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.460e-41
Identity = 89/183 (48.63%), Postives = 112/183 (61.20%), Query Frame = 1
Query:  562 NEHDDDIRQLALPGLVSLLVDPVLSLVDTAYIGRVGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMG 1110
            +EHD +I +++LP L++LLVDP LSL DTAY+ R+G   LA LGPCTS+FH  FN FRA +QSTT LV  +LA  DRD+   V VQ + LA ++   +S  L  Q  R+   MG    S L      YLKVR LAAPAVL++ V EG +RG   T TP       A  + VLDP LIF   +G
Sbjct:  156 SEHDAEIARISLPALLTLLVDPFLSLCDTAYVSRLGTLPLACLGPCTSIFHLSFNGFRAFSQSTTALVSGALAQQDRDRVRAVVVQALILACVLGTLVSAVLNIQATRILALMGAPAGSRLSATGLPYLKVRALAAPAVLMLMVGEGAYRGFADTLTPLPITFTVALVNLVLDPWLIFPGRVG 338          
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: D7CWB4_TRURR (MATE efflux family protein n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) TaxID=649638 RepID=D7CWB4_TRURR)

HSP 1 Score: 160 bits (405), Expect = 3.300e-41
Identity = 99/226 (43.81%), Postives = 129/226 (57.08%), Query Frame = 1
Query:  553 FRKNEHDDDIRQLALPGLVSLLVDPVLSLVDTAYIGRVGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGL---FTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRRARRGTMAIPLP 1221
             R N +D DI  LALP L +L  DP++SLVDTA++GR+G+  LA+LG  T++F   F  F  L   TT +V RSL  GDR+ AG+  VQ ++LA L     +GGL   F Q    P     G    L   A  YL+VR LA PA+LLIT   G FRG+  TRTP    L     +  LDPL IF F  G+AGAA AT  AQ+A    ++ +L+ R R   +++ LP
Sbjct:    5 LRVNPYDRDILALALPALGTLAADPLVSLVDTAFVGRLGSVPLAALGVNTALFSLAFVVFNFLAYGTTPMVARSLGRGDREAAGRAVVQALTLALL-----AGGLAVAFLQLFAAPLLRLMGAGEELVGPALGYLRVRALAGPALLLITAGNGAFRGYQDTRTPFLLTLGLNLVNVALDPLFIFGFGWGLAGAAWATVVAQWAGALGFVWVLFARRRALGISVALP 225          
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A7S4A8V8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A8V8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.930e-40
Identity = 97/206 (47.09%), Postives = 122/206 (59.22%), Query Frame = 1
Query:  589 LALPGLVSLLVDPVLSLVDTAYIGRV--GASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQV----AVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRR 1188
            +ALP LV LLVDP+LS+VDTA+IGR   GA+ LA+LG CTS+FH  F  FRA T +TT LVG +    ++ +  ++    A  M  L FL      G + T        M   P SP++  A  YL  R  AAPAV+ I V EG FRG+   +TP  AA VAA  + +LDPLL+F   MGMAGAA ATA +Q A  A Y   LW+R
Sbjct:  196 IALPALVGLLVDPLLSIVDTAFIGRSAGGATDLAALGVCTSIFHMAFTVFRASTVATTSLVGSASTPEEKRQITKISFGFAFTMGILVFLALRLAGGHMLTG-------MALSPNSPVFHSACSYLFTRAWAAPAVVFIVVAEGAFRGNGDNKTPLVAASVAAVVNLILDPLLMFPMGMGMAGAAAATAISQLAAAAMYAWRLWKR 394          
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A7S4ER10_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ER10_9STRA)

HSP 1 Score: 161 bits (408), Expect = 4.960e-40
Identity = 100/238 (42.02%), Postives = 140/238 (58.82%), Query Frame = 1
Query:  496 ASPTGKLPSAGARRVTGGIFRKNEHDDDIRQLALPGLVSLLVDPVLSLVDTAYIGRV---GASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFK-FNMGMAGAATATATAQYACLATYLTLLWRRARR 1197
            A  +G  P++     T    ++         LALP L+ +L DP+LSL+DT  +GR+   G S LA+LG CTS+FH  FN FRA T +TT LVG+S +  +R +  Q+++   +L  ++ + ++  L    P   G MG   +SPL+  ++ YL  R  AAPAVLL TV EG FRG+  TR P  A+ VAA  + VLDPLL+   F+MG+ GAA ATA AQ+  LA Y   +W R R+
Sbjct:  200 AKQSGSTPTSSLVTTTTNQIQRYRWTSKASALALPALIGMLADPLLSLMDTVCVGRLSVSGTSDLAALGACTSLFHLAFNAFRATTAATTSLVGKSNSKTERRQIVQISL---TLGLVLGLLVAAFLRLAGPWCLGCMGVPRSSPLFAPSSAYLFARCPAAPAVLLATVAEGAFRGYGDTRIPLLASGVAALLNAVLDPLLMLPPFSMGVKGAAQATAVAQFGALAVYG--VWLRKRK 432          
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A7S4R613_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R613_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.360e-39
Identity = 97/219 (44.29%), Postives = 134/219 (61.19%), Query Frame = 1
Query:  589 LALPGLVSLLVDPVLSLVDTAYIGRVGASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQVAVQMV---SLAF--LICVAISGGLFTQTPRVPGFMGTGP-------------ASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIF-KFNMGMAGAATATATAQYACLATYLTLLWRR 1188
            +ALP LV ++ DP+LSLVDT Y+ ++G+  LA+LG CTS+FH  +N+FRA T +TT LV  +LA    D+      ++V   SL F  +I V +S  L+     +   MG  P             +SPLY  A  Y++ R LAAPAVLLITV EG FRG+ +T+ P  A+ VAA A+ +LDP+L+F K +MG++GAA ATA +QY     Y   L+RR
Sbjct:  113 IALPALVGMIADPLLSLVDTLYVSKLGSIPLAALGTCTSIFHLSYNSFRATTTATTSLVATALAQDVDDEENHKEAKVVTATSLKFGVMIGVIVSLILWIGNDVILHAMGVPPPSSLHKTLKHPHPSSPLYSPATSYIRCRSLAAPAVLLITVAEGAFRGYANTKIPLLASAVAALANIILDPILMFGKCDMGVSGAALATAFSQYGAAFVYSFFLFRR 331          
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Match: A0A448ZSW3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSW3_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.970e-39
Identity = 93/206 (45.15%), Postives = 122/206 (59.22%), Query Frame = 1
Query:  589 LALPGLVSLLVDPVLSLVDTAYIGRV--GASSLASLGPCTSVFHFCFNTFRALTQSTTVLVGRSLAAGDRDKAGQV----AVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGPASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAFAHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRR 1188
            +ALP L+ LL DP+LS+VDTA++GR   GA  LA+LG CTS+FH  F  FRA T +TT LVG +    ++ +  ++    A+ M +L FL      G + T        M   P S ++  A  YL  R  AAPAVL + V EG FRG+  ++TP  AA VAA  + +LDPLL+F   MGMAGAA ATA +Q A  A Y   LW+R
Sbjct:  140 IALPALMGLLADPLLSIVDTAFVGRSVGGAIDLAALGVCTSIFHMAFTVFRASTVATTSLVGSASTPEEKRQTTKISMGFALAMGTLVFLSLRLAGGHMLTG-------MAVAPNSDVFRSACSYLYTRSWAAPAVLFVLVAEGAFRGNGDSKTPLVAASVAAVVNLILDPLLMFPLRMGMAGAAAATAISQIAAAALYAWRLWKR 338          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVE7_9PHAE1.910e-7560.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XLC3_HETAK2.230e-5548.18Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
W7TRZ3_9STRA1.560e-4948.37Mate efflux family protein (Fragment) n=2 Tax=Nann... [more]
A0A0G4EWE7_VITBC4.580e-4847.91Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A4D9CNC1_9STRA1.460e-4148.63Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D7CWB4_TRURR3.300e-4143.81MATE efflux family protein n=1 Tax=Truepera radiov... [more]
A0A7S4A8V8_9STRA1.930e-4047.09Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4ER10_9STRA4.960e-4042.02Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4R613_9STRA1.360e-3944.29Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A448ZSW3_9STRA1.970e-3945.15Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:203625..206933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score163.7
Seed ortholog evalue1.6e-37
Seed eggNOG ortholog649638.Trad_2970
Preferred namedinF
KEGG koko:K03327
KEGG TC2.A.66.1
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
EggNOG free text desc.COGs COG0534 Na -driven multidrug efflux pump
EggNOG OGs1WMCE@1297,COG0534@1,COG0534@2
COG Functional cat.V
Best tax levelDeinococcus-Thermus
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Exons4
Model size1222
Cds size1059
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1882.1prot_S-ischiensis_contig106.1882.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 203625..206771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.8446727-CDS-S-ischiensis_contig106:203624..2038941622815568.8446727-CDS-S-ischiensis_contig106:203624..203894Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 203625..203894 -
1695739775.8256214-CDS-S-ischiensis_contig106:203624..2038941695739775.8256214-CDS-S-ischiensis_contig106:203624..203894Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 203625..203894 -
1622815568.8558452-CDS-S-ischiensis_contig106:204698..2048471622815568.8558452-CDS-S-ischiensis_contig106:204698..204847Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 204699..204847 -
1695739775.8387513-CDS-S-ischiensis_contig106:204698..2048471695739775.8387513-CDS-S-ischiensis_contig106:204698..204847Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 204699..204847 -
1622815568.871024-CDS-S-ischiensis_contig106:205861..2060881622815568.871024-CDS-S-ischiensis_contig106:205861..206088Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 205862..206088 -
1695739775.848743-CDS-S-ischiensis_contig106:205861..2060881695739775.848743-CDS-S-ischiensis_contig106:205861..206088Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 205862..206088 -
1622815568.8832242-CDS-S-ischiensis_contig106:206358..2067711622815568.8832242-CDS-S-ischiensis_contig106:206358..206771Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 206359..206771 -
1695739775.858915-CDS-S-ischiensis_contig106:206358..2067711695739775.858915-CDS-S-ischiensis_contig106:206358..206771Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 206359..206771 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.894899-UTR-S-ischiensis_contig106:206771..2069331622815568.894899-UTR-S-ischiensis_contig106:206771..206933Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 206772..206933 -
1695739775.876831-UTR-S-ischiensis_contig106:206771..2069331695739775.876831-UTR-S-ischiensis_contig106:206771..206933Schizocladia ischiensis KU_0333UTRS-ischiensis_contig106 206772..206933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1882.1

>prot_S-ischiensis_contig106.1882.1 ID=prot_S-ischiensis_contig106.1882.1|Name=mRNA_S-ischiensis_contig106.1882.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=353bp
MGKARETRHMVRAMQVSSFPRNMRHCTASIVSIVSLLRFTCLALGPCGAN
PLILNVSRLSLRPTWAPHTDLHARSGPGNNAGHGFPHCDTWAGPRLVPSC
VSLRGVGGSADASPTGKLPSAGARRVTGGIFRKNEHDDDIRQLALPGLVS
LLVDPVLSLVDTAYIGRVGASSLASLGPCTSVFHFCFNTFRALTQSTTVL
VGRSLAAGDRDKAGQVAVQMVSLAFLICVAISGGLFTQTPRVPGFMGTGP
ASPLYEEAARYLKVRGLAAPAVLLITVCEGVFRGHNHTRTPARAALVAAF
AHTVLDPLLIFKFNMGMAGAATATATAQYACLATYLTLLWRRARRGTMAI
PLP
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mRNA from alignment at S-ischiensis_contig106:203625..206933-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1882.1 ID=mRNA_S-ischiensis_contig106.1882.1|Name=mRNA_S-ischiensis_contig106.1882.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3309bp|location=Sequence derived from alignment at S-ischiensis_contig106:203625..206933- (Schizocladia ischiensis KU_0333)
TGTCATCAGGGGTCGGGCAGGTTGTGAGAAAAACGTGGGGCATACATAGT AGTATACAACGGGCAATCAGTCCGCAGGCGCGCTAGAAGGGCCACTGTTG AGGTTGCGACATGGCCTGTACCTCGCCCTGCGTTTTTCCTGCGACGTGGC CTGTACCCAGGGATGGGAAAAGCGAGGGAGACCAGGCATATGGTCCGCGC AATGCAAGTCTCATCGTTTCCCAGGAACATGAGGCACTGCACTGCTTCAA TTGTGTCCATTGTGTCCCTGCTGAGGTTTACATGCCTGGCGCTTGGCCCA TGTGGAGCAAACCCCCTCATCCTGAACGTGTCCCGGCTCTCGCTGAGACC CACATGGGCACCTCACACGGACCTCCATGCGCGCTCTGGTCCTGGCAATA ATGCCGGTCATGGATTCCCACACTGTGACACGTGGGCTGGTCCTCGCTTG GTACCAAGCTGTGTCAGCTTGAGAGGCGTCGGCGGCTCAGCCGATGCCAG CCCCACAGGCAAGCTCCCCTCCGCCGGAGCCCGGAGAGTCACAGGAGGCA TCTTCCGCAAGAACGAACATGACGAGTGAGTGCGGACACACCCGCGTCTT CGTCTTCGGCTGGATGGGTAGGTTTGGATCCAACGCCCCCCGCCCCCAAG GTTGAACTGGCTGTGTTTTTTACTCGAACGCCTTCGAAAGTCCCCTCTAG GCAGCTCCGCTCTTCCACGAGGCTGGTTTGAGGTCCATGCCCAACAAGGG TTGCAACAAAACGCCTGAGCGCTCATTGATTGCACCTCTGAAATTCTCAC CCACCATCCGGATGCACGGCGCTCCAATGCTGGGCCCTCCTGCAGCGATA TCCGGCAGCTGGCCCTTCCCGGGCTAGTGTCCCTTCTCGTCGACCCGGTG CTCTCCCTGGTTGACACCGCCTACATCGGGAGGGTGGGAGCTTCCAGCCT GGCGTCACTGGGCCCCTGCACCAGCGTGTTCCACTTTTGCTTCAACACCT TCCGGGCGCTGACGCAGAGCACCACCGTGCTAGTCGGCCGCAGCCTGGCT GCAGGGGATCGAGACAAAGCAGGTGCTCGTACGTGGGCATTCGTGTTGGC GTTGGCGTTCCGTGTACTGTATTGTATGGCCCCAGCCAGCTCTCCCTGGA GGCGGCCCTGTCTTGGCCCGAATACCGTGATCGTCGGAGAGATTTGCCCT CACGGGACAATTCTCGGGAGAACATTTCTCGCCGAATGGGTCCCAAATTG TCCCGAAATTCACCCGAAAAATGCCTCCAGGTCCCGAGGGAGTTTTGCCG AGTTTTCCTGCGCGAATCCGAGCAGTGTTCGGCGAGAAAAGTTCTCCCGA AAATTGGCATGGGGGGGTAAAATCTCTCCGACAATTACGGTAGCCCCCCT GGGGTCTGAAGCAGTGTGTGAGATCCCGTGTCTGCCACAGTAGTACTAGC AAGAACACAGGGCGATGTGCAGGCCACGTCACTAAAGACCTCAACAGCGG CCCCTCCTTAGCTCGCCAGTGGAGGGGGTGTGTGGGGGGGGGGGGGGAGA AGGAGAAGGAAGAGTAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAA GGGGAGGAGGGGAAAGGGGGTTTGCCCCCCAGTCGTACTTGCAGTACATG ATGGTTGGCCTCTGTGCAACAAAAAACTTTGAAGTACGGTAACTAGCAGC CAGGACCATGGGAGGGCTCGACGCCCTGCTTGAGCCCCGGCGTCCCGCCC CGGGGGGCGTCCCACGGCTGGTGTGAGTACAAGTACACCACCATGGAAAC GTGCGTGCGCCTCGAGTGTCTCCTTTCAGTAGGCGTGAATGTGCCTGTCC TGAGGGGTTTTGATGGCAGGTGCCGTACTTAGGTGGGTAGCCCTGCAGCA CACCAATTCGCCCTTTGCAATGTCTTTGCCCCCCTTTTTGTCAGGGTTGG CACTTACCCCCTACAGCAAGTGATGCCCTTTTACGCCCTTAGCTAGAGGC AATTAGGGGTAGCTAGACCTAAAATGACGCCTACACAGGCCCGAATTAAC CTCTAAGTGCCAACCCTGCTGTTTTTTCCCCAACAGGTCAGGTAGCTGTG CAGATGGTTAGCTTGGCCTTCCTCATTTGTGTGGCCATTTCCGGCGGGCT CTTCACGCAAACTCCGCGGGTCCCGGGCTTCATGGGGACAGGGCCTGCGT CCCCCCTCTATGAGGAGGCAGCCCGCTATCTCAAGGTGAGCCCACCACCG GGCGCAAACGATTATGCCAATCCCCGGCTTGTATGAAGGGGGGGGGGGCG GAGCACTAGGAGGGGGGGGGGGAGGAGAGCATTGCTGGTGCGCGTTTCCA TCCCAGGGCGATACTTGTATTGTGGGCCTAGGCTTACTGTAGTGCAAGTA AGAAGGCTTGCTCCGCGTGGCCTCGCACCCACAACCCGCGGTTCGGGCAG CCGGCAATGGGGTGGTGTTGGGGCCGAAGGTGACCGGGGGGAGGCCGCCG GCAATGGGGTGGTGTTGGGGCCGAAGGTGACCGGGGGGAGGTGAGTGGAG AGAGTTGACAGGCAGGAGGAAGAACAGGTCCTCGTACTGTACTCCTCTAC TGCTGCAGAGTACTTGTACAGCGGTAGCATGTACTCCAGTACTGTACAGT AGTTGGCACTTCGAAGTACTTCGCAGTAGTACTTGTACAAGCGTATGGGC GACAGAAGAGGTGCCTGACCCATGGCACCTGCACTGGCTCACAAGACAAA CACCAGCGGTCACGGGACACCACTTTACTGCTGCAAGCAGTTTAGTAGGG TTCCGGCCACACAGCACATGGAGCAGGTCGGACAGGCCCCCCTCCCACCC TCTTCGATGTACCTGCTCCCAACTCTGCCGCACCCCCTCCCAGAGGAAAC AGTGCTCCGTCCCGTAGGGTTCCCATGTGGGACGTGTGGTCAGGCCATAT GGCTACGGCAGGCAGCTCGTGAGTACTTCGAAGTATGTACACCCCCCGCC CTCCCTGCCCCCCGCCCCGCACGCCTTCCCTCCCCCCAGGTGCGAGGGCT GGCAGCCCCGGCGGTGCTCCTCATCACAGTATGTGAGGGCGTGTTTCGCG GCCACAACCACACCAGAACGCCTGCCAGGGCCGCCCTCGTGGCCGCCTTC GCCCACACCGTGCTGGACCCGCTGCTCATCTTCAAATTTAACATGGGGAT GGCCGGCGCGGCGACCGCCACGGCGACCGCACAATACGCGTGCCTGGCCA CCTACCTCACGCTTCTGTGGCGCAGGGCCCGCCGGGGGACCATGGCCATC CCGCTGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig106:203625..206933-

>mRNA_S-ischiensis_contig106.1882.1 ID=mRNA_S-ischiensis_contig106.1882.1|Name=mRNA_S-ischiensis_contig106.1882.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2118bp|location=Sequence derived from alignment at S-ischiensis_contig106:203625..206933- (Schizocladia ischiensis KU_0333)
ATGGGAAAAGCGAGGGAGACCAGGCATATGGTCCGCGCAATGCAAGTCTC
ATCGTTTCCCAGGAACATGAGGCACTGCACTGCTTCAATTGTGTCCATTG
TGTCCCTGCTGAGGTTTACATGCCTGGCGCTTGGCCCATGTGGAGCAAAC
CCCCTCATCCTGAACGTGTCCCGGCTCTCGCTGAGACCCACATGGGCACC
TCACACGGACCTCCATGCGCGCTCTGGTCCTGGCAATAATGCCGGTCATG
GATTCCCACACTGTGACACGTGGGCTGGTCCTCGCTTGGTACCAAGCTGT
GTCAGCTTGAGAGGCGTCGGCGGCTCAGCCGATGCCAGCCCCACAGGCAA
GCTCCCCTCCGCCGGAGCCCGGAGAGTCACAGGAGGCATCTTCCGCAAGA
ACGAACATGACGAATGGGAAAAGCGAGGGAGACCAGGCATATGGTCCGCG
CAATGCAAGTCTCATCGTTTCCCAGGAACATGAGGCACTGCACTGCTTCA
ATTGTGTCCATTGTGTCCCTGCTGAGGTTTACATGCCTGGCGCTTGGCCC
ATGTGGAGCAAACCCCCTCATCCTGAACGTGTCCCGGCTCTCGCTGAGAC
CCACATGGGCACCTCACACGGACCTCCATGCGCGCTCTGGTCCTGGCAAT
AATGCCGGTCATGGATTCCCACACTGTGACACGTGGGCTGGTCCTCGCTT
GGTACCAAGCTGTGTCAGCTTGAGAGGCGTCGGCGGCTCAGCCGATGCCA
GCCCCACAGGCAAGCTCCCCTCCGCCGGAGCCCGGAGAGTCACAGGAGGC
ATCTTCCGCAAGAACGAACATGACGACGATATCCGGCAGCTGGCCCTTCC
CGGGCTAGTGTCCCTTCTCGTCGACCCGGTGCTCTCCCTGGTTGACACCG
CCTACATCGGGAGGGTGGGAGCTTCCAGCCTGGCGTCACTGGGCCCCTGC
ACCAGCGTGTTCCACTTTTGCTTCAACACCTTCCGGGCGCTGACGCAGAG
CACCACCGTGCTAGTCGGCCGCAGCCTGGCTGCAGGGGATCGAGACAAAG
CAGCGATATCCGGCAGCTGGCCCTTCCCGGGCTAGTGTCCCTTCTCGTCG
ACCCGGTGCTCTCCCTGGTTGACACCGCCTACATCGGGAGGGTGGGAGCT
TCCAGCCTGGCGTCACTGGGCCCCTGCACCAGCGTGTTCCACTTTTGCTT
CAACACCTTCCGGGCGCTGACGCAGAGCACCACCGTGCTAGTCGGCCGCA
GCCTGGCTGCAGGGGATCGAGACAAAGCAGGTCAGGTAGCTGTGCAGATG
GTTAGCTTGGCCTTCCTCATTTGTGTGGCCATTTCCGGCGGGCTCTTCAC
GCAAACTCCGCGGGTCCCGGGCTTCATGGGGACAGGGCCTGCGTCCCCCC
TCTATGAGGAGGCAGCCCGCTATCTCAAGGTCAGGTAGCTGTGCAGATGG
TTAGCTTGGCCTTCCTCATTTGTGTGGCCATTTCCGGCGGGCTCTTCACG
CAAACTCCGCGGGTCCCGGGCTTCATGGGGACAGGGCCTGCGTCCCCCCT
CTATGAGGAGGCAGCCCGCTATCTCAAGGTGCGAGGGCTGGCAGCCCCGG
CGGTGCTCCTCATCACAGTATGTGAGGGCGTGTTTCGCGGCCACAACCAC
ACCAGAACGCCTGCCAGGGCCGCCCTCGTGGCCGCCTTCGCCCACACCGT
GCTGGACCCGCTGCTCATCTTCAAATTTAACATGGGGATGGCCGGCGCGG
CGACCGCCACGGCGACCGCACAATACGCGTGCCTGGCCACCTACCTCACG
CTTCTGTGGCGCAGGGCCCGCCGGGGGACCATGGCCATCCCGCTGCCCGT
GCGAGGGCTGGCAGCCCCGGCGGTGCTCCTCATCACAGTATGTGAGGGCG
TGTTTCGCGGCCACAACCACACCAGAACGCCTGCCAGGGCCGCCCTCGTG
GCCGCCTTCGCCCACACCGTGCTGGACCCGCTGCTCATCTTCAAATTTAA
CATGGGGATGGCCGGCGCGGCGACCGCCACGGCGACCGCACAATACGCGT
GCCTGGCCACCTACCTCACGCTTCTGTGGCGCAGGGCCCGCCGGGGGACC
ATGGCCATCCCGCTGCCC
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