mRNA_S-ischiensis_contig72.18607.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig72.18607.1
Unique NamemRNA_S-ischiensis_contig72.18607.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig72.18607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig72contigS-ischiensis_contig72:786580..787218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size639
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig72.18607.1prot_S-ischiensis_contig72.18607.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig72 786821..787141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817193.715829-UTR-S-ischiensis_contig72:786579..7868201622817193.715829-UTR-S-ischiensis_contig72:786579..786820Schizocladia ischiensis KU_0333UTRS-ischiensis_contig72 786580..786820 +
1695740925.6557038-UTR-S-ischiensis_contig72:786579..7868201695740925.6557038-UTR-S-ischiensis_contig72:786579..786820Schizocladia ischiensis KU_0333UTRS-ischiensis_contig72 786580..786820 +
1622817193.737605-UTR-S-ischiensis_contig72:787141..7872181622817193.737605-UTR-S-ischiensis_contig72:787141..787218Schizocladia ischiensis KU_0333UTRS-ischiensis_contig72 787142..787218 +
1695740925.6883953-UTR-S-ischiensis_contig72:787141..7872181695740925.6883953-UTR-S-ischiensis_contig72:787141..787218Schizocladia ischiensis KU_0333UTRS-ischiensis_contig72 787142..787218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817193.7268045-CDS-S-ischiensis_contig72:786820..7871411622817193.7268045-CDS-S-ischiensis_contig72:786820..787141Schizocladia ischiensis KU_0333CDSS-ischiensis_contig72 786821..787141 +
1695740925.6674447-CDS-S-ischiensis_contig72:786820..7871411695740925.6674447-CDS-S-ischiensis_contig72:786820..787141Schizocladia ischiensis KU_0333CDSS-ischiensis_contig72 786821..787141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig72.18607.1

>prot_S-ischiensis_contig72.18607.1 ID=prot_S-ischiensis_contig72.18607.1|Name=mRNA_S-ischiensis_contig72.18607.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=107bp
MPARGGQPLARAHFRRGTEATAWRRPVTLGWRSVGHADRHARDTWEMNRN
PSSQAKSRTQKRTKLGSLRGLPATVSSPARASMLTHSVRPRHNETTMRVH
WQCVRG*
back to top

mRNA from alignment at S-ischiensis_contig72:786580..787218+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig72.18607.1 ID=mRNA_S-ischiensis_contig72.18607.1|Name=mRNA_S-ischiensis_contig72.18607.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=639bp|location=Sequence derived from alignment at S-ischiensis_contig72:786580..787218+ (Schizocladia ischiensis KU_0333)
GGCGGCTCCAAGCGGTCCAGAGGGGTCGTCGTGTGAGTTTGTCTCGTCAC
GGGGGGGGGAGTCGGGTTGCCCCCCGAGCTGGAACAGTTCCCGGTCGGGG
TCGGTCATCCGCGCCCACTGGAGGAGGTCAAGGTGGCCCCCACGTGCCGC
GGAGGTGCACGTCTCCGAGCTCCAGGGGATCCCGTTGGCCGTTGCCCACC
GGAGAACCTCCAGGTGCCCCCCCCTGGCGGCCCGCGCGCAGATGCCCGCG
CGCGGAGGGCAGCCGCTGGCCAGGGCCCATTTCAGGCGCGGCACGGAGGC
GACAGCGTGGCGCAGGCCGGTGACCCTCGGGTGGCGGTCGGTGGGCCACG
CGGATCGCCACGCCCGCGACACCTGGGAGATGAACAGGAATCCCTCGTCC
CAAGCGAAGTCGAGGACGCAGAAGAGGACGAAGCTGGGTTCGCTCAGGGG
GTTGCCGGCGACGGTTTCGTCTCCGGCCAGGGCTTCCATGTTGACGCACA
GTGTGCGCCCCAGGCACAACGAAACCACAATGCGAGTGCACTGGCAGTGC
GTTCGAGGATAGGTCTACTGCCCCCCACAGTGGCCTCTCCCGTGCGCAAC
CACACACACAGCGGTAGCGTGGGCCTGCCTCGACCTTTC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig72:786580..787218+

>mRNA_S-ischiensis_contig72.18607.1 ID=mRNA_S-ischiensis_contig72.18607.1|Name=mRNA_S-ischiensis_contig72.18607.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=642bp|location=Sequence derived from alignment at S-ischiensis_contig72:786580..787218+ (Schizocladia ischiensis KU_0333)
ATGCCCGCGCGCGGAGGGCAGCCGCTGGCCAGGGCCCATTTCAGGCGCGG
CACGGAGGCGACAGCGTGGCGCAGGCCGGTGACCCTCGGGTGGCGGTCGG
TGGGCCACGCGGATCGCCACGCCCGCGACACCTGGGAGATGAACAGGAAT
CCCTCGTCCCAAGCGAAGTCGAGGACGCAGAAGAGGACGAAGCTGGGTTC
GCTCAGGGGGTTGCCGGCGACGGTTTCGTCTCCGGCCAGGGCTTCCATGT
TGACGCACAGTGTGCGCCCCAGGCACAACGAAACCACAATGCGAGTGCAC
TGGCAGTGCGTTCGAGGATAGATGCCCGCGCGCGGAGGGCAGCCGCTGGC
CAGGGCCCATTTCAGGCGCGGCACGGAGGCGACAGCGTGGCGCAGGCCGG
TGACCCTCGGGTGGCGGTCGGTGGGCCACGCGGATCGCCACGCCCGCGAC
ACCTGGGAGATGAACAGGAATCCCTCGTCCCAAGCGAAGTCGAGGACGCA
GAAGAGGACGAAGCTGGGTTCGCTCAGGGGGTTGCCGGCGACGGTTTCGT
CTCCGGCCAGGGCTTCCATGTTGACGCACAGTGTGCGCCCCAGGCACAAC
GAAACCACAATGCGAGTGCACTGGCAGTGCGTTCGAGGATAG
back to top