mRNA_S-ischiensis_contig106.1858.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig106.1858.1
Unique NamemRNA_S-ischiensis_contig106.1858.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig106.1858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig106contigS-ischiensis_contig106:55015..57092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.2144654-CDS-S-ischiensis_contig106:55014..552811622815566.2144654-CDS-S-ischiensis_contig106:55014..55281Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 55015..55281 -
1695739774.1311054-CDS-S-ischiensis_contig106:55014..552811695739774.1311054-CDS-S-ischiensis_contig106:55014..55281Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 55015..55281 -
1622815566.233263-CDS-S-ischiensis_contig106:56900..570921622815566.233263-CDS-S-ischiensis_contig106:56900..57092Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 56901..57092 -
1695739774.1408582-CDS-S-ischiensis_contig106:56900..570921695739774.1408582-CDS-S-ischiensis_contig106:56900..57092Schizocladia ischiensis KU_0333CDSS-ischiensis_contig106 56901..57092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig106.1858.1prot_S-ischiensis_contig106.1858.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig106 55015..57092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig106.1858.1

>prot_S-ischiensis_contig106.1858.1 ID=prot_S-ischiensis_contig106.1858.1|Name=mRNA_S-ischiensis_contig106.1858.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=153bp
GQGGSAERWLQGEGGWGSDADGGGGERGEGAAERKRPKGQGALQVQEESA
GSSGSDSDRHSRAKAPRDGSASSTSSGAREGISSITASPRGGGRDRERGN
SAWQTWQHGEPRPHDDAHAHSRTSTSSPCRTPAATAVAAGRGASDNHSGD
RDS
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mRNA from alignment at S-ischiensis_contig106:55015..57092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig106.1858.1 ID=mRNA_S-ischiensis_contig106.1858.1|Name=mRNA_S-ischiensis_contig106.1858.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2078bp|location=Sequence derived from alignment at S-ischiensis_contig106:55015..57092- (Schizocladia ischiensis KU_0333)
GGCCAAGGGGGTTCGGCGGAGCGGTGGCTACAAGGAGAAGGAGGTTGGGG
ATCTGACGCAGATGGCGGAGGGGGTGAGAGGGGGGAAGGGGCTGCGGAGC
GCAAGCGGCCGAAGGGACAAGGAGCACTACAAGTACAAGAGGAGTCCGCT
GGCAGCAGTGGCAGTGACAGTGACAGACACAGCAGGGCAAAGGTGAGCCA
GAGCCAAATGCCCCATAGTTTTACCTTGGAGTACTGTGTGGAGGAGCTCA
GGAAGTTTTGTAGAAAGTCTTGAGTGACGTGGCCTGCACCTCGCCCTGCG
ATTTTCCTGTTGAATCATGATGGCATCAACGATCCGCCGTCTAGATGTTA
CCAAGTAAACACAGACTGTAGGTGAAACACCAATGATATAGCCTTAATCG
GTTTGGCCGACACGCCGAACTTCCTGCGGACGGCCATTATGTCGCCTAGA
CAGACTTGGCACCCTTAGGCCATAACACGTTGTCCAAACAGCGGAGGCTG
TTTACTGTACAATAGCACTCGTGGTTGTTCCACCAGACACACTGATCCGC
AAACCATCCTCTCCTTGGAAGCCATGGACTTACTGTAAAGTACTTCCAAG
TACTTCCTTGGAAGTACATAGGACAGTACAGTACAGTATAGTAGGTAGGT
GCTTTGAAAGTGCGTACTTGAAACCTGCACTGTACTGTAGTACTTCAAAG
TATATGAAAATGTGCTGTGTAAAGTACTCATTGTCTCACGACATACTGTA
CATGTGTGTGCTTAGCCGACAGCCTTATATAGAAAACTTTGGGTTTCCCC
CCCGACAGGAGTACCTCAGGAGTTGGCTATGTTCAGTACCTACGCACGGG
TGTATTTTGCACGCACTACATAGTACTTCGAAGCACATTGCACAACACCT
GACGAGAAACTCTGATAGTCTTGATAGACTTTCTCTATCTATCTCTGTAG
TTAGCCTCGTTCTTATTTTCAGAAATGTGCCCCCCCGCTGCAGAAACTAC
AGGAGCAGTGAGGTTTCGTGCGGCGGTCCCTTGGCGGTATATGGCCCAAG
GGTTCCTACGCTGAAACTCCTGCGTTCGAGTCCGGCTGACCAGTAAACAG
TCTACTTTCTTGAACCGCAGATGGACGGAGCGCCTCTTTCTTTTTAGTTT
GCGCCGCAGGAGCCCCACCTTTCTTTTCAGGCGCCGCACACTGTGCTTGT
ACGTACTATATTGTACTCGTACTTGGAGGTACTATTACAGTAGTACGAGT
AGCAATATATGTGCGGCTCACGTTTTGCTAGCTTTTCTCAGACACCACTT
CCGACAAGCCCTCCTAGAAGCGCTGTACAGCAGGAATGTACTGTACTCTT
AGCTTTTTGTCGTGGTCATTGCAGTAGCACTCGAGTACTGTGGGTGCAAT
GATGACAGTAGTACAGTTGTGGCCGACACAAGGACTTGGTGGTCGTTCAG
TACAGTGACTGCGCTCGAGTACTCAAGTACCAGTGGTATGCACTGTACTG
TACTGTACTGTAGTATGTACTGTAATGTACGAGTACTGTGGTACGTATGT
ACTGTACTGTACAGTCCGACACAAGGGCTCCTGAAGGCGTGCCGTCCGCT
GACACATGCGTGGAGCGCTGCATGGCGCTCCAAGATGTCCTGCACCAACC
TACAATTACGTGGAGGTACTTGGGAAGTCCTCTACTACTGTACTCGTAGC
ACTCGTGCAGCATCATATCGTATCGTATCGCACACACTTCAGTTGAGGGG
ATCCATCTGATCATTGTGGGGCCTTGGCCCTGCCTTGTCCAATCAACCCT
CCCTTCTGCAGGCGCCCAGAGATGGCAGCGCCAGCAGCACCAGCAGCGGG
GCAAGAGAAGGCATCTCTTCAATTACCGCATCGCCGCGCGGGGGGGGACG
TGACCGTGAGCGCGGCAACTCTGCATGGCAAACCTGGCAGCATGGGGAGC
CTCGGCCTCACGACGACGCCCACGCCCACAGCCGTACAAGTACTAGTAGC
CCTTGCCGGACTCCGGCGGCTACAGCTGTCGCGGCTGGAAGGGGCGCCAG
TGATAATCACTCTGGGGACCGTGATTCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig106:55015..57092-

>mRNA_S-ischiensis_contig106.1858.1 ID=mRNA_S-ischiensis_contig106.1858.1|Name=mRNA_S-ischiensis_contig106.1858.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=918bp|location=Sequence derived from alignment at S-ischiensis_contig106:55015..57092- (Schizocladia ischiensis KU_0333)
GGCCAAGGGGGTTCGGCGGAGCGGTGGCTACAAGGAGAAGGAGGTTGGGG
ATCTGACGCAGATGGCGGAGGGGGTGAGAGGGGGGAAGGGGCTGCGGAGC
GCAAGCGGCCGAAGGGACAAGGAGCACTACAAGTACAAGAGGAGTCCGCT
GGCAGCAGTGGCAGTGACAGTGACAGACACAGCAGGGCAAAGGGCCAAGG
GGGTTCGGCGGAGCGGTGGCTACAAGGAGAAGGAGGTTGGGGATCTGACG
CAGATGGCGGAGGGGGTGAGAGGGGGGAAGGGGCTGCGGAGCGCAAGCGG
CCGAAGGGACAAGGAGCACTACAAGTACAAGAGGAGTCCGCTGGCAGCAG
TGGCAGTGACAGTGACAGACACAGCAGGGCAAAGGCGCCCAGAGATGGCA
GCGCCAGCAGCACCAGCAGCGGGGCAAGAGAAGGCATCTCTTCAATTACC
GCATCGCCGCGCGGGGGGGGACGTGACCGTGAGCGCGGCAACTCTGCATG
GCAAACCTGGCAGCATGGGGAGCCTCGGCCTCACGACGACGCCCACGCCC
ACAGCCGTACAAGTACTAGTAGCCCTTGCCGGACTCCGGCGGCTACAGCT
GTCGCGGCTGGAAGGGGCGCCAGTGATAATCACTCTGGGGACCGTGATTC
TGCGCCCAGAGATGGCAGCGCCAGCAGCACCAGCAGCGGGGCAAGAGAAG
GCATCTCTTCAATTACCGCATCGCCGCGCGGGGGGGGACGTGACCGTGAG
CGCGGCAACTCTGCATGGCAAACCTGGCAGCATGGGGAGCCTCGGCCTCA
CGACGACGCCCACGCCCACAGCCGTACAAGTACTAGTAGCCCTTGCCGGA
CTCCGGCGGCTACAGCTGTCGCGGCTGGAAGGGGCGCCAGTGATAATCAC
TCTGGGGACCGTGATTCT
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