mRNA_S-ischiensis_contig105.1827.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig105.1827.1
Unique NamemRNA_S-ischiensis_contig105.1827.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig105.1827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig105contigS-ischiensis_contig105:78553..79991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size292
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig105.1827.1prot_S-ischiensis_contig105.1827.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig105 78553..79991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.9455144-CDS-S-ischiensis_contig105:78552..786951622815562.9455144-CDS-S-ischiensis_contig105:78552..78695Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 78553..78695 +
1695739772.2183313-CDS-S-ischiensis_contig105:78552..786951695739772.2183313-CDS-S-ischiensis_contig105:78552..78695Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 78553..78695 +
1622815562.9576538-CDS-S-ischiensis_contig105:79124..792421622815562.9576538-CDS-S-ischiensis_contig105:79124..79242Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 79125..79242 +
1695739772.2329876-CDS-S-ischiensis_contig105:79124..792421695739772.2329876-CDS-S-ischiensis_contig105:79124..79242Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 79125..79242 +
1622815562.967072-CDS-S-ischiensis_contig105:79961..799911622815562.967072-CDS-S-ischiensis_contig105:79961..79991Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 79962..79991 +
1695739772.2447016-CDS-S-ischiensis_contig105:79961..799911695739772.2447016-CDS-S-ischiensis_contig105:79961..79991Schizocladia ischiensis KU_0333CDSS-ischiensis_contig105 79962..79991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig105.1827.1

>prot_S-ischiensis_contig105.1827.1 ID=prot_S-ischiensis_contig105.1827.1|Name=mRNA_S-ischiensis_contig105.1827.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=97bp
AAAAAVAGPGTAVPGGLSSVANLKASGIGVGIGILGESRNPGRGPEGRGK
AASTAVSNQRARDTKNAHGGLQAAASGRADLVIGNPKGHKTGRPGPG
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mRNA from alignment at S-ischiensis_contig105:78553..79991+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig105.1827.1 ID=mRNA_S-ischiensis_contig105.1827.1|Name=mRNA_S-ischiensis_contig105.1827.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1439bp|location=Sequence derived from alignment at S-ischiensis_contig105:78553..79991+ (Schizocladia ischiensis KU_0333)
GCGGCGGCAGCGGCGGTGGCGGGACCGGGGACCGCCGTGCCTGGGGGTCT
CTCATCGGTCGCGAATCTCAAGGCCAGCGGCATCGGGGTCGGTATTGGAA
TCCTGGGTGAAAGTCGGAATCCTGGAAGAGGGCCAGAGGGCAGGTGGGCT
TAAGTTCGGCAAAACACCAGGCCAATGGCCGGGGGGGGGGGATGGGGGGG
CGTGCAGATGGTTCGAGGCCCGCGGAGACAGTCATCCCGTCCTCCTTTTG
TCTTGTGGAGGTACCTAAAGGTTCCAGGGCCAGAGTACAGGAGGCTTGAG
TGCTTTTTTACGCCCTTTCCGCATCCTTCAGTCGGTGTGCGCTGCGAAGT
ACCGGTGGAGCACTCCAAGTATCCGTGCCCCCCCCCCAACACGTGCGCGA
GCCTCAAGGCACCTGGGCCCCCGTGGTGTCCGGATCCCAACCGAAGCCCG
CTGGAGACCCTTGGTTCCAAACTGATGCCCTTTTCACGTTCTTGAACTCG
CCGCTTACTTTCAAGTATGTACTCGAGTACTTTGAAGTACCAATCAAGTA
CCCGTACCCGCCTTTGCGGCAGGGGCAAGGCCGCCTCCACCGCCGTCTCC
AACCAGCGGGCGAGAGACACCAAGAACGCCCACGGGGGGCTGCAGGCAGC
AGCGTCGGGCAGGGCTGATCTTGTCATCGGGAACCCCAAGGTGAGGTTGG
ATCCGGTAGCAGCGCTGTCACAGACAAGTCCTGCCTCCCTTGCCACCACC
ACCACCACAAACATCACCACCGCCATGTCAGCCACCCATCACCCCCACTA
GCACCTCCTCCTCCTCCTCCGCCGCCACCACCACCACCACCACCACCACC
ACTACCACCATCACCACCATCACCACCGCCTCCTCCACCACCACCACCTC
CAACATCAGCGCTGTGCTGGTTGCTCTCACGTGCCCCCCCGAGGTATGCC
TCCCCTGGGCGGGCGCTGATGTGCCATTGGGGGGGGGGGGCGCTTGCTTG
CTCGTGGAATGCCTCGAATGTAGTATCTGCTGCGCACAAGTGTCCACCCA
TCAACTCTCCACCACCGAGTGCCGCCGCTGCGGAAGCGAGAGCTCCCTGG
CCTCTCGGCCCACCGCACCTACCATAGTCGTCGGAGAGATTTTCCCCCCA
TGGGCCAATTTTTGGGGGAATATTTCTAGCCAGGAAGATCCTGAATTGTC
CCGAAAAACTCTCGGAAAAGTTCCCCCAGGTCCTGAGGGAGATTTTCCGA
GTTTCCTGCGCGAATCTGACCAGTATTCGTCGAGAAATGTTCTCCCAAAA
ATGGGCATGGGGGGCAAGATCTCTCTGACGATTGTGGTACAGGACGCCTC
TTCCCCCTCCCTCTAACTGTGACCTGGTCCGCCCCGCACCTCTTTCCCCC
TGCACGCAGGGCCACAAGACAGGACGACCAGGACCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig105:78553..79991+

>mRNA_S-ischiensis_contig105.1827.1 ID=mRNA_S-ischiensis_contig105.1827.1|Name=mRNA_S-ischiensis_contig105.1827.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=582bp|location=Sequence derived from alignment at S-ischiensis_contig105:78553..79991+ (Schizocladia ischiensis KU_0333)
GCGGCGGCAGCGGCGGTGGCGGGACCGGGGACCGCCGTGCCTGGGGGTCT
CTCATCGGTCGCGAATCTCAAGGCCAGCGGCATCGGGGTCGGTATTGGAA
TCCTGGGTGAAAGTCGGAATCCTGGAAGAGGGCCAGAGGGCAGGCGGCGG
CAGCGGCGGTGGCGGGACCGGGGACCGCCGTGCCTGGGGGTCTCTCATCG
GTCGCGAATCTCAAGGCCAGCGGCATCGGGGTCGGTATTGGAATCCTGGG
TGAAAGTCGGAATCCTGGAAGAGGGCCAGAGGGCAGGGGCAAGGCCGCCT
CCACCGCCGTCTCCAACCAGCGGGCGAGAGACACCAAGAACGCCCACGGG
GGGCTGCAGGCAGCAGCGTCGGGCAGGGCTGATCTTGTCATCGGGAACCC
CAAGGGGCAAGGCCGCCTCCACCGCCGTCTCCAACCAGCGGGCGAGAGAC
ACCAAGAACGCCCACGGGGGGCTGCAGGCAGCAGCGTCGGGCAGGGCTGA
TCTTGTCATCGGGAACCCCAAGGGCCACAAGACAGGACGACCAGGACCGG
GGGGCCACAAGACAGGACGACCAGGACCGGGG
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