mRNA_S-ischiensis_contig104.1818.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig104.1818.1
Unique NamemRNA_S-ischiensis_contig104.1818.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig104.1818.1 vs. uniprot
Match: A0A6H5L2F5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2F5_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 8.440e-49
Identity = 74/105 (70.48%), Postives = 93/105 (88.57%), Query Frame = 1
Query:   43 SVWNVPNILSMARVLVIPVFMLVFYSAFPLRNVWCAGIFAAASATDWLDGYIARRQGITTPFGSFLDPVADKLMVATALVLLSERLGTWMSVCTSITMCREIGVS 357
            ++WNVPNIL+MARV+ IPVF  +FY++ P RN+WC+ IFA A+ TDWLDGYIARRQGI TPFGSFLDPVADKL+V+TAL+LLSERLG WM+VC++I +CRE+ +S
Sbjct:  154 TLWNVPNILTMARVMAIPVFATIFYASLPRRNIWCSAIFAGAAFTDWLDGYIARRQGIVTPFGSFLDPVADKLLVSTALILLSERLGPWMTVCSAIILCRELAIS 258          
BLAST of mRNA_S-ischiensis_contig104.1818.1 vs. uniprot
Match: A0A835ZDG0_9STRA (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDG0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 4.760e-42
Identity = 66/112 (58.93%), Postives = 88/112 (78.57%), Query Frame = 1
Query:   22 VAGSREVSVWNVPNILSMARVLVIPVFMLVFYSAFPLRNVWCAGIFAAASATDWLDGYIARRQGITTPFGSFLDPVADKLMVATALVLLSERLGTWMSVCTSITMCREIGVS 357
            V G    ++WNVPNIL++AR++ +P+   +FY+    RN+WCA +FA A+ TDWLDG+ AR+  I +PFG+FLDPVADKL+VA A++LLSERLG WM+VCTSI +CREI VS
Sbjct:   36 VEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVS 147          
BLAST of mRNA_S-ischiensis_contig104.1818.1 vs. uniprot
Match: W7TJV8_9STRA (Cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJV8_9STRA)

HSP 1 Score: 132 bits (331), Expect = 6.460e-35
Identity = 65/120 (54.17%), Postives = 93/120 (77.50%), Query Frame = 1
Query:    7 AAGPGVAGSR--EVSVWNVPNILSMARVLVIPVFMLVFYSAFPLRNVWCAGIFAAASATDWLDGYIARRQGITTPFGSFLDPVADKLMVATALVLLSERLGT-WMSVCTSITMCREIGVS 357
            A G   A +R  E S+WN+PNIL++ RV+ IPV ++++Y++   RN  C+G+F  A+ TDWLDGY+ARR  +++P G+FLDPVADKLMVATALVL+++RL +  ++V T+I +CREIGVS
Sbjct:  141 AGGGNAASNRGNEPSLWNLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVS 260          
BLAST of mRNA_S-ischiensis_contig104.1818.1 vs. uniprot
Match: A0A7S2V0D2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0D2_9STRA)

HSP 1 Score: 125 bits (315), Expect = 7.950e-34
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 1
Query:   43 SVWNVPNILSMARVLVIPVFMLVFYSAFPLRNVWCAGIFAAASATDWLDGYIARRQGITTPFGSFLDPVADKLMVATALVLLSERLGTWM-SVCTSITMCREIGVS 357
            ++WN+PNIL+M RV+ IP+F  VFY   P RN   A IFA ASATDWLDGY+AR+  IT+PFG+FLDPVADKLMVA+ALVLL+   G W+ +V  +I + REI VS
Sbjct:   26 NLWNIPNILTMLRVVAIPIFAFVFYLPVPWRNKATAAIFAVASATDWLDGYLARKWKITSPFGAFLDPVADKLMVASALVLLAGSEGGWVVAVPAAIILAREITVS 131          
BLAST of mRNA_S-ischiensis_contig104.1818.1 vs. uniprot
Match: UPI001A9F60D6 (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI001A9F60D6)

HSP 1 Score: 122 bits (306), Expect = 7.870e-33
Identity = 61/103 (59.22%), Postives = 82/103 (79.61%), Query Frame = 1
Query:   52 NVPNILSMARVLVIPVFMLVFYSAFPLRNVWCAGIFAAASATDWLDGYIARRQGITTPFGSFLDPVADKLMVATALVLLSE-RLGTWMSVCTSITMCREIGVS 357
            N+PN+L++ RVL+IP+F+L+FYS+FP  ++  + +FA A+ATDWLDGY+ARR G +TPFG+FLDPVADKLMVATALVLL E     W+++   I + REI VS
Sbjct:    2 NIPNLLTLLRVLLIPIFILLFYSSFPASHLVASAVFALAAATDWLDGYLARRLGQSTPFGAFLDPVADKLMVATALVLLVEAHANLWLTLPAVIIIGREIVVS 104          
BLAST of mRNA_S-ischiensis_contig104.1818.1 vs. uniprot
Match: A0A7S2UZN3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZN3_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.080e-32
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 1
Query:   43 SVWNVPNILSMARVLVIPVFMLVFYSAFPLRNVWCAGIFAAASATDWLDGYIARRQGITTPFGSFLDPVADKLMVATALVLLSERLGTWM-SVCTSITMCREIGVS 357
            ++WN+PNIL+M RV+ IP+F  VFY   P RN   A IFA ASATDWLDGY+AR+  IT+PFG+FLDPVADKLMVA+ALVLL+   G W+ +V  +I + REI VS
Sbjct:  139 NLWNIPNILTMLRVVAIPIFAFVFYLPVPWRNKATAAIFAVASATDWLDGYLARKWKITSPFGAFLDPVADKLMVASALVLLAGSEGGWVVAVPAAIILAREITVS 244          
BLAST of mRNA_S-ischiensis_contig104.1818.1 vs. uniprot
Match: A0A7S4U8V2_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4U8V2_GUITH)

HSP 1 Score: 119 bits (297), Expect = 2.550e-31
Identity = 62/112 (55.36%), Postives = 86/112 (76.79%), Query Frame = 1
Query:   31 SREVSVWNVPNILSMARVLVIPVFMLVFYSAFPLRNVWCAGIFAAASATDWLDGYIARRQGITTPFGSFLDPVADKLMVATALVLLS---ERLGTWMSVCTSITMCREIGVS 357
            +++  +WN+PN+L+MARVL+IP+ +    S++P RNV  + IFA AS TD +DGY+ARR  I++ FG+FLDPVADKLMVATALV LS    R+G  ++V ++IT+CREI VS
Sbjct:    9 AKDKHLWNLPNVLTMARVLMIPLMVAFLVSSYPGRNVVASVIFAVASLTDLVDGYLARRWKISSNFGAFLDPVADKLMVATALVFLSAGYSRVGGGVAVASAITICREIAVS 120          
BLAST of mRNA_S-ischiensis_contig104.1818.1 vs. uniprot
Match: UPI001F4DA6FB (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Pseudomonas sp. A3.4 TaxID=2919919 RepID=UPI001F4DA6FB)

HSP 1 Score: 115 bits (287), Expect = 5.810e-30
Identity = 57/103 (55.34%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   52 NVPNILSMARVLVIPVFMLVFYSAFPLRNVWCAGIFAAASATDWLDGYIARRQGITTPFGSFLDPVADKLMVATALVLLSE-RLGTWMSVCTSITMCREIGVS 357
            N+PNIL++ RV +IPVF+++FY  F       + +FA A+ATDWLDGY+ARR G TTPFG+FLDPVADKL+VA ALV+L E     W+++  ++ +CREI VS
Sbjct:    2 NIPNILTLLRVALIPVFVVLFYMPFSWSYWAASAVFALAAATDWLDGYLARRWGQTTPFGAFLDPVADKLIVAVALVMLVESHASLWLTIPAAVIICREIVVS 104          
BLAST of mRNA_S-ischiensis_contig104.1818.1 vs. uniprot
Match: A0A1H2I4Z0_9PSED (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Pseudomonas guangdongensis TaxID=1245526 RepID=A0A1H2I4Z0_9PSED)

HSP 1 Score: 114 bits (286), Expect = 7.590e-30
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   52 NVPNILSMARVLVIPVFMLVFYSAFPLRNVWCAGIFAAASATDWLDGYIARRQGITTPFGSFLDPVADKLMVATALVLL-SERLGTWMSVCTSITMCREIGVS 357
            N+PN+L++ RVL+IPVF+ +FY  F       +G+FA ASATDWLDGY+ARR G +TPFG+FLDPVADKLMVA ALVLL  E    W+S+   I + REI VS
Sbjct:    2 NIPNLLTVLRVLLIPVFIALFYLPFSWSYWAASGVFALASATDWLDGYLARRLGQSTPFGAFLDPVADKLMVAVALVLLVEEHSSLWLSLPAMIIIGREIVVS 104          
BLAST of mRNA_S-ischiensis_contig104.1818.1 vs. uniprot
Match: A0A370DFG8_9GAMM (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=6 Tax=Bacteria TaxID=2 RepID=A0A370DFG8_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 1.020e-29
Identity = 54/104 (51.92%), Postives = 78/104 (75.00%), Query Frame = 1
Query:   49 WNVPNILSMARVLVIPVFMLVFYSAFPLRNVWCAGIFAAASATDWLDGYIARRQGITTPFGSFLDPVADKLMVATALVLLSERLGT-WMSVCTSITMCREIGVS 357
            WN+PN+L++ R+++IPVF+L+FY       + CA +FA A+ TDWLDG++ARR G  +PFG+FLDPVADKLMVA AL+LL +   T W+++  +I + REI +S
Sbjct:    2 WNIPNLLTLLRIVLIPVFVLIFYLPVEWARIGCAAVFALAAVTDWLDGFLARRWGQVSPFGAFLDPVADKLMVAVALLLLVQSEPTPWLALPAAIIIGREITIS 105          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig104.1818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2F5_9PHAE8.440e-4970.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDG0_9STRA4.760e-4258.93CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
W7TJV8_9STRA6.460e-3554.17Cdp-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A7S2V0D2_9STRA7.950e-3461.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI001A9F60D67.870e-3359.22CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A7S2UZN3_9STRA1.080e-3261.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4U8V2_GUITH2.550e-3155.36Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
UPI001F4DA6FB5.810e-3055.34CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A1H2I4Z0_9PSED7.590e-3059.22CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A370DFG8_9GAMM1.020e-2951.92CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig104contigS-ischiensis_contig104:333139..333960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue7.4e-40
Seed eggNOG ortholog2880.D7FID2
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K00995
KEGG ReactionR01801
KEGG Pathwayko00564,ko01100,map00564,map01100
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006996,GO:0008150,GO:0008152,GO:0008444,GO:0008610,GO:0008654,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009657,GO:0009668,GO:0009941,GO:0009987,GO:0010027,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0030145,GO:0031967,GO:0031975,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0046872,GO:0046914,GO:0061024,GO:0071704,GO:0071840,GO:0090407,GO:1901576
EggNOG free text desc.cardiolipin synthase activity
EggNOG OGsCOG0558@1,KOG1617@2759
EC2.7.8.5
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Ec32 orthologEc-11_001460.1
Exons2
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.8490622-CDS-S-ischiensis_contig104:333138..3333961622815562.8490622-CDS-S-ischiensis_contig104:333138..333396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 333139..333396 +
1695739772.1602905-CDS-S-ischiensis_contig104:333138..3333961695739772.1602905-CDS-S-ischiensis_contig104:333138..333396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 333139..333396 +
1622815562.8619995-CDS-S-ischiensis_contig104:333858..3339601622815562.8619995-CDS-S-ischiensis_contig104:333858..333960Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 333859..333960 +
1695739772.1820529-CDS-S-ischiensis_contig104:333858..3339601695739772.1820529-CDS-S-ischiensis_contig104:333858..333960Schizocladia ischiensis KU_0333CDSS-ischiensis_contig104 333859..333960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig104.1818.1prot_S-ischiensis_contig104.1818.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig104 333139..333960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig104.1818.1

>prot_S-ischiensis_contig104.1818.1 ID=prot_S-ischiensis_contig104.1818.1|Name=mRNA_S-ischiensis_contig104.1818.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=120bp
MPAAGPGVAGSREVSVWNVPNILSMARVLVIPVFMLVFYSAFPLRNVWCA
GIFAAASATDWLDGYIARRQGITTPFGSFLDPVADKLMVATALVLLSERL
GTWMSVCTSITMCREIGVSG
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mRNA from alignment at S-ischiensis_contig104:333139..333960+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig104.1818.1 ID=mRNA_S-ischiensis_contig104.1818.1|Name=mRNA_S-ischiensis_contig104.1818.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=822bp|location=Sequence derived from alignment at S-ischiensis_contig104:333139..333960+ (Schizocladia ischiensis KU_0333)
ATGCCGGCCGCGGGGCCGGGGGTGGCAGGATCGCGGGAGGTCTCGGTGTG GAACGTACCCAACATCCTCAGTATGGCCCGGGTGCTGGTCATCCCAGTCT TTATGTTGGTCTTCTACTCGGCCTTCCCGCTGCGCAACGTATGGTGCGCC GGCATCTTCGCCGCGGCCTCTGCCACAGACTGGCTGGATGGGTACATCGC CCGGCGGCAGGGCATTACAACGCCCTTTGGGTCCTTCCTGGACCCCGTTG CGGACAAGGTGGGCCACCCTTTGCGCGTTACTCATCTATCCAAGCCTCTC CCCTTTCCTTGGGGCGCCCAGCGTCCTGCTTCCATACACGTGCTCCGGTT TCTCCTCCTCTTCCTCCTCCCCCTCCCCGCCACCCTCCCCCCCTCCCCCG CGCCGCATGTCCCCAGTCCTCCCCCGTTCTCTCTCTCACACAATCACTCT CCACCCGCAACACACACACACACACCTGCACCTGCCTTGCCCCCCTCGGC TCGGCTGATGGCGGTGCCGGCTGGCTGGCCCGGCCTCTGCCTCGTCCTCT CTCTCCCACGGGGGGCTGCAATGTGTCCCATACCTCTTTGTTGGGCACCT GGGGACGCCCGTTGCGGCGCCGGTCGGCTGTCCTTTACATGCGTTGCGGC CTCCTGCACCCACGGGCCGGCCTTGACGTTCGCGGGATGCCTTCCCAAAC CCACTCTCTCTCAACGGCAGCTAATGGTGGCGACGGCACTGGTGCTGCTT TCGGAGCGGCTGGGGACTTGGATGTCGGTGTGCACCTCCATCACAATGTG CCGGGAGATTGGGGTGAGTGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig104:333139..333960+

>mRNA_S-ischiensis_contig104.1818.1 ID=mRNA_S-ischiensis_contig104.1818.1|Name=mRNA_S-ischiensis_contig104.1818.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=720bp|location=Sequence derived from alignment at S-ischiensis_contig104:333139..333960+ (Schizocladia ischiensis KU_0333)
ATGCCGGCCGCGGGGCCGGGGGTGGCAGGATCGCGGGAGGTCTCGGTGTG
GAACGTACCCAACATCCTCAGTATGGCCCGGGTGCTGGTCATCCCAGTCT
TTATGTTGGTCTTCTACTCGGCCTTCCCGCTGCGCAACGTATGGTGCGCC
GGCATCTTCGCCGCGGCCTCTGCCACAGACTGGCTGGATGGGTACATCGC
CCGGCGGCAGGGCATTACAACGCCCTTTGGGTCCTTCCTGGACCCCGTTG
CGGACAAGATGCCGGCCGCGGGGCCGGGGGTGGCAGGATCGCGGGAGGTC
TCGGTGTGGAACGTACCCAACATCCTCAGTATGGCCCGGGTGCTGGTCAT
CCCAGTCTTTATGTTGGTCTTCTACTCGGCCTTCCCGCTGCGCAACGTAT
GGTGCGCCGGCATCTTCGCCGCGGCCTCTGCCACAGACTGGCTGGATGGG
TACATCGCCCGGCGGCAGGGCATTACAACGCCCTTTGGGTCCTTCCTGGA
CCCCGTTGCGGACAAGCTAATGGTGGCGACGGCACTGGTGCTGCTTTCGG
AGCGGCTGGGGACTTGGATGTCGGTGTGCACCTCCATCACAATGTGCCGG
GAGATTGGGGTGAGTGGGCTAATGGTGGCGACGGCACTGGTGCTGCTTTC
GGAGCGGCTGGGGACTTGGATGTCGGTGTGCACCTCCATCACAATGTGCC
GGGAGATTGGGGTGAGTGGG
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