prot_S-ischiensis_contig103.1785.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig103.1785.1
Unique Nameprot_S-ischiensis_contig103.1785.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length265
Homology
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BLAST of mRNA_S-ischiensis_contig103.1785.1 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.270e-26
Identity = 66/167 (39.52%), Postives = 87/167 (52.10%), Query Frame = 0 
Query:   66 MKFGVNTAAPFLGMKQEQRELS-PYSRQYWIRRSERPGRVLIVQEKEEEQATGAAPTAGATSRELGGGSSLPGTGGRLLHTLEGDVELEKQMASRAPMATRLKAVVEGQQYGLGDVVIRAGSCRKGTLHRGLVLEMVYKPTHDIEGGTAFIAAVKDMLDVEGAFRPA 231
            M+FGVNTA  F+G    Q++ + P+ R   +RRS+ PGRV +VQE  +  AT                         L   L GD  LE  MA + P  TRLKAV+EG  + LGD  +R G+CRKG+ +RGL +E+ Y P   +  G A I A+   LD  G FR A
Sbjct:    1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAAT-------------------------LEQVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTFRHA 142
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig103.1785.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z8G4_9STRA4.270e-2639.52Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013921Mediator complex, subunit Med20PFAMPF08612Med20coord: 11..228
e-value: 1.2E-7
score: 31.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig103contigS-ischiensis_contig103:230262..235412 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig103.1785.1mRNA_S-ischiensis_contig103.1785.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig103 230120..235417 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig103.1785.1 ID=prot_S-ischiensis_contig103.1785.1|Name=mRNA_S-ischiensis_contig103.1785.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=265bp
MTASDTTEPVCCVFGRPLPASQVVDELQTLQLRLTESLGAEPLDRWTVEV
TYRLRQKEKKGMGNEMKFGVNTAAPFLGMKQEQRELSPYSRQYWIRRSER
PGRVLIVQEKEEEQATGAAPTAGATSRELGGGSSLPGTGGRLLHTLEGDV
ELEKQMASRAPMATRLKAVVEGQQYGLGDVVIRAGSCRKGTLHRGLVLEM
VYKPTHDIEGGTAFIAAVKDMLDVEGAFRPASDLRDGRLFGPGPKYTAKH
TALQVTDLLNRTFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013921Mediator_Med20