mRNA_S-ischiensis_contig103.1785.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig103.1785.1 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.290e-25 Identity = 66/167 (39.52%), Postives = 87/167 (52.10%), Query Frame = 3
Query: 201 MKFGVNTAAPFLGMKQEQRELS-PYSRQYWIRRSERPGRVLIVQEKEEEQATGAAPTAGATSRELGGGSSLPGTGGRLLHTLEGDVELEKQMASRAPMATRLKAVVEGQQYGLGDVVIRAGSCRKGTLHRGLVLEMVYKPTHDIEGGTAFIAAVKDMLDVEGAFRPA 698
M+FGVNTA F+G Q++ + P+ R +RRS+ PGRV +VQE + AT L L GD LE MA + P TRLKAV+EG + LGD +R G+CRKG+ +RGL +E+ Y P + G A I A+ LD G FR A
Sbjct: 1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAAT-------------------------LEQVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTFRHA 142 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig103.1785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig103.1785.1 >prot_S-ischiensis_contig103.1785.1 ID=prot_S-ischiensis_contig103.1785.1|Name=mRNA_S-ischiensis_contig103.1785.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=265bp MTASDTTEPVCCVFGRPLPASQVVDELQTLQLRLTESLGAEPLDRWTVEVback to top mRNA from alignment at S-ischiensis_contig103:230120..235417- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig103.1785.1 ID=mRNA_S-ischiensis_contig103.1785.1|Name=mRNA_S-ischiensis_contig103.1785.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5298bp|location=Sequence derived from alignment at S-ischiensis_contig103:230120..235417- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig103:230120..235417- >mRNA_S-ischiensis_contig103.1785.1 ID=mRNA_S-ischiensis_contig103.1785.1|Name=mRNA_S-ischiensis_contig103.1785.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1590bp|location=Sequence derived from alignment at S-ischiensis_contig103:230120..235417- (Schizocladia ischiensis KU_0333)back to top |