mRNA_S-ischiensis_contig102.1747.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1747.1
Unique NamemRNA_S-ischiensis_contig102.1747.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig102.1747.1 vs. uniprot
Match: D8LLS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS5_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.910e-17
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 2 
Query:  143 PGDVRQLCSILVGKGFRTDEANADGDTALTMAISAGRVGTVGYLVGKAGASLDMEDKEGRSCLDLAAIMFSMFPEEGR 376
            P D+ +    L+ KG   D    +GDT L++AISAG VG+VG+LV KAGA+LD+ DKEGR+CLDLAA+MFS+FP++ R
Sbjct:   16 PNDIMRR---LLDKGVPIDAETENGDTPLSLAISAGGVGSVGFLV-KAGAALDLADKEGRNCLDLAAVMFSLFPKKVR 89
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BLAST of mRNA_S-ischiensis_contig102.1747.1 vs. uniprot
Match: A0A6H5KV01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV01_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 6.600e-10
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 2 
Query:  173 LVGKGFRTDEANADGDTALTMAISAGRVGTVGYLVGKAGASLDMEDKEGRSCLDLAAIMFSMFPEEGRRVVMEYLRQQGATFRAIGEDFIAASHQRAKELQAVVDAN 493
            L+ KG   D    +GDT L++AISAG VG+VG+LV KAGA+LD+ DK                      V++ +L+  GATF+ I  D IA SH  A  L    DA+
Sbjct:    4 LLDKGVPIDAETENGDTPLSLAISAGGVGSVGFLV-KAGAALDLADK----------------------VIIRFLQNNGATFKLIDSDVIAESHATAAALGVKTDAD 87
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLS5_ECTSI2.910e-1756.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV01_9PHAE6.600e-1040.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:133760..135016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_002690.1
Exons3
Model size561
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1747.1prot_S-ischiensis_contig102.1747.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 133992..135016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.0491908-UTR-S-ischiensis_contig102:133759..1339911622815554.0491908-UTR-S-ischiensis_contig102:133759..133991Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 133760..133991 +
1695739766.0974717-UTR-S-ischiensis_contig102:133759..1339911695739766.0974717-UTR-S-ischiensis_contig102:133759..133991Schizocladia ischiensis KU_0333UTRS-ischiensis_contig102 133760..133991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.0613573-CDS-S-ischiensis_contig102:133991..1340421622815554.0613573-CDS-S-ischiensis_contig102:133991..134042Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 133992..134042 +
1695739766.1054153-CDS-S-ischiensis_contig102:133991..1340421695739766.1054153-CDS-S-ischiensis_contig102:133991..134042Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 133992..134042 +
1622815554.0737295-CDS-S-ischiensis_contig102:134420..1345071622815554.0737295-CDS-S-ischiensis_contig102:134420..134507Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 134421..134507 +
1695739766.1135352-CDS-S-ischiensis_contig102:134420..1345071695739766.1135352-CDS-S-ischiensis_contig102:134420..134507Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 134421..134507 +
1622815554.0869749-CDS-S-ischiensis_contig102:134827..1350161622815554.0869749-CDS-S-ischiensis_contig102:134827..135016Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 134828..135016 +
1695739766.1230915-CDS-S-ischiensis_contig102:134827..1350161695739766.1230915-CDS-S-ischiensis_contig102:134827..135016Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 134828..135016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1747.1

>prot_S-ischiensis_contig102.1747.1 ID=prot_S-ischiensis_contig102.1747.1|Name=mRNA_S-ischiensis_contig102.1747.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
MAISAGRVGTVGYLVGKAGASLDMEDKEGRSCLDLAAIMFSMFPEEGRRV
VMEYLRQQGATFRAIGEDFIAASHQRAKELQAVVDANDAKNDGEDDATET
AAEAEVDGG
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mRNA from alignment at S-ischiensis_contig102:133760..135016+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1747.1 ID=mRNA_S-ischiensis_contig102.1747.1|Name=mRNA_S-ischiensis_contig102.1747.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1257bp|location=Sequence derived from alignment at S-ischiensis_contig102:133760..135016+ (Schizocladia ischiensis KU_0333)
GGGGGCCCTGAACTCGCGCAAGTAGGAACACCTCCTCTTTTCCACTCGCT
TTTTATCTTCATGCCAAAAACTACTCGTACTGCACAGTATCGCACACTTT
CGGGATATTTCGAGACTCAAGCCGCCGCCGTCGCTTTGCAAACCCGGGGA
CGTCCGGCAGCTGTGCAGCATCCTGGTGGGCAAAGGCTTCCGGACGGACG
AGGCAAACGCGGACGGCGACACGGCACTCACCATGGCCATCAGCGCCGGT
CGGGTGGGAACCGTGGGCTACCTCGTGGGGAAGGTGAGCAGCTCTTCTTC
AACCCTTTTACCTCCGGGGTCCGCATAGTCATAGGGGCTTAGTGTGTAAG
TCCATTTTTTTCGAGGGGTAAAAGGCAACGGGTTGCGGTCGAGGTTCGGG
ATCGGGGTCGGGGTCGGGGCCGGGGCCGGGGTCAGGGCAAGGAAGCATGC
CTACTTGTTCATCTCGGCGAGAGGAATCGAATGGTGCGAGAACCACCTCA
GAACTCTTAGCCCTTTTACCCCTGCTAAATTGGGTTTGCACACTAAACCC
CTATGATTGTACGGACCCCAGGGGTAAAATGGTTGATTGAATCTCGTGTT
GTTGAATCTGGATTTCGAATTGTCCGCCCTTCCTCCCTCCCCTCCCGCCG
TTGAAAAAAAGGCGGGCGCCTCTCTGGACATGGAGGACAAGGAGGGCCGC
AGCTGCCTGGACCTGGCCGCCATCATGTTCAGCATGTTCCCGGAGGAGGT
AAGACCAGTGATGGAATATCCATCAGTACAGTAGACAGCTATCGGGCTCG
ACTGATTTTGTGGGCGGCGTTACTACTGTAGCTACTTCAGTACTTGAAGG
CCACTGCTGAGGTCTCTAGTGACGTGGCCCGCACCTCGCCCCGTGCTGTT
CCTGTTAATACTTGGATTTAGTGTGGGTCAAACTATCGAATATTGACTAT
CGATACATATACGATTGTAGATCAGTACTGTCGATAAATAGGTTGATTTG
CGTAGCTATTCCATCACTGACATAAACGCACGCCCCGCCCGGGGGGGGCC
TCAATCGCCTGCACGCAGGGGCGACGCGTGGTGATGGAATACCTGCGCCA
GCAGGGCGCCACCTTCCGGGCCATCGGGGAGGACTTCATCGCCGCCAGCC
ACCAGCGCGCAAAGGAGCTGCAGGCTGTGGTCGATGCAAACGATGCAAAG
AACGACGGGGAGGACGATGCCACGGAAACAGCCGCAGAGGCTGAGGTGGA
TGGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig102:133760..135016+

>mRNA_S-ischiensis_contig102.1747.1 ID=mRNA_S-ischiensis_contig102.1747.1|Name=mRNA_S-ischiensis_contig102.1747.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig102:133760..135016+ (Schizocladia ischiensis KU_0333)
ATGGCCATCAGCGCCGGTCGGGTGGGAACCGTGGGCTACCTCGTGGGGAA
GATGGCCATCAGCGCCGGTCGGGTGGGAACCGTGGGCTACCTCGTGGGGA
AGGCGGGCGCCTCTCTGGACATGGAGGACAAGGAGGGCCGCAGCTGCCTG
GACCTGGCCGCCATCATGTTCAGCATGTTCCCGGAGGAGGCGGGCGCCTC
TCTGGACATGGAGGACAAGGAGGGCCGCAGCTGCCTGGACCTGGCCGCCA
TCATGTTCAGCATGTTCCCGGAGGAGGGGCGACGCGTGGTGATGGAATAC
CTGCGCCAGCAGGGCGCCACCTTCCGGGCCATCGGGGAGGACTTCATCGC
CGCCAGCCACCAGCGCGCAAAGGAGCTGCAGGCTGTGGTCGATGCAAACG
ATGCAAAGAACGACGGGGAGGACGATGCCACGGAAACAGCCGCAGAGGCT
GAGGTGGATGGGGGCGGGCGACGCGTGGTGATGGAATACCTGCGCCAGCA
GGGCGCCACCTTCCGGGCCATCGGGGAGGACTTCATCGCCGCCAGCCACC
AGCGCGCAAAGGAGCTGCAGGCTGTGGTCGATGCAAACGATGCAAAGAAC
GACGGGGAGGACGATGCCACGGAAACAGCCGCAGAGGCTGAGGTGGATGG
GGGC
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