mRNA_S-ischiensis_contig102.1746.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig102.1746.1
Unique NamemRNA_S-ischiensis_contig102.1746.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig102.1746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig102contigS-ischiensis_contig102:129343..133664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size808
Cds size807
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig102.1746.1prot_S-ischiensis_contig102.1746.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig102 129343..133664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.940976-CDS-S-ischiensis_contig102:129342..1295091622815553.940976-CDS-S-ischiensis_contig102:129342..129509Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 129343..129509 +
1695739766.0447278-CDS-S-ischiensis_contig102:129342..1295091695739766.0447278-CDS-S-ischiensis_contig102:129342..129509Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 129343..129509 +
1622815553.9510434-CDS-S-ischiensis_contig102:130080..1302401622815553.9510434-CDS-S-ischiensis_contig102:130080..130240Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 130081..130240 +
1695739766.0546114-CDS-S-ischiensis_contig102:130080..1302401695739766.0546114-CDS-S-ischiensis_contig102:130080..130240Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 130081..130240 +
1622815553.9638305-CDS-S-ischiensis_contig102:131541..1316981622815553.9638305-CDS-S-ischiensis_contig102:131541..131698Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 131542..131698 +
1695739766.063371-CDS-S-ischiensis_contig102:131541..1316981695739766.063371-CDS-S-ischiensis_contig102:131541..131698Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 131542..131698 +
1622815553.9767442-CDS-S-ischiensis_contig102:132003..1321521622815553.9767442-CDS-S-ischiensis_contig102:132003..132152Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 132004..132152 +
1695739766.072475-CDS-S-ischiensis_contig102:132003..1321521695739766.072475-CDS-S-ischiensis_contig102:132003..132152Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 132004..132152 +
1622815553.9957485-CDS-S-ischiensis_contig102:132757..1328711622815553.9957485-CDS-S-ischiensis_contig102:132757..132871Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 132758..132871 +
1695739766.0810406-CDS-S-ischiensis_contig102:132757..1328711695739766.0810406-CDS-S-ischiensis_contig102:132757..132871Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 132758..132871 +
1622815554.0168495-CDS-S-ischiensis_contig102:133604..1336641622815554.0168495-CDS-S-ischiensis_contig102:133604..133664Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 133605..133664 +
1695739766.0892584-CDS-S-ischiensis_contig102:133604..1336641695739766.0892584-CDS-S-ischiensis_contig102:133604..133664Schizocladia ischiensis KU_0333CDSS-ischiensis_contig102 133605..133664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig102.1746.1

>prot_S-ischiensis_contig102.1746.1 ID=prot_S-ischiensis_contig102.1746.1|Name=mRNA_S-ischiensis_contig102.1746.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=269bp
VIARSTICLDDMTSSSAPGTTTERLFAAAEAGDVDAITALVAAGASVNEV
NERGESPLAVACQRGHSEVVKWLALAGAGVNDKDTDMGATPLIFACISGH
YATVRELLKAGADVDEAFDSENNSITPLHFGVQCAGTFMARKQPWASYGA
VVKILLQGGASVEKKDRMGRTPLHFAAELGHLEVTAWLLEASAPVGERDK
NGTTPLHFACKGGHVAVVKALLEAGAEVKDVNAKGSGPLHFAASSGNAQV
CSILVGKGCRVTFQDLSLL
back to top

mRNA from alignment at S-ischiensis_contig102:129343..133664+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig102.1746.1 ID=mRNA_S-ischiensis_contig102.1746.1|Name=mRNA_S-ischiensis_contig102.1746.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4322bp|location=Sequence derived from alignment at S-ischiensis_contig102:129343..133664+ (Schizocladia ischiensis KU_0333)
GTCATCGCGCGCTCGACAATTTGCTTGGACGACATGACGAGCTCCAGCGC
ACCGGGTACAACGACTGAGCGCCTCTTCGCGGCGGCAGAGGCCGGAGACG
TCGACGCAATCACGGCACTCGTGGCTGCGGGCGCTTCCGTGAACGAGGTG
AACGAGAGAGGAGAGAGGTGAGAGGGTACGTCATCGTCGGTGTTTCGGCC
TGTAGGTGATGTCTCGCGGAAGCTGTTGCGCAACAGTGACGGTGACCCAG
GGGGGCTTGACATCCGGATTCACGGTTAACATGACCGCCTGGCGCCCCCG
GGGCGTATGCCTGCAATACAGCTCCGACGATAATTTGAAGCGGAGCGCTT
CGGCACCATTTCATGCTCCTGCAGTTTCGAGGGCAGCCGGAAAATCACGG
TAAAATGGGCCCACACAGTCACTCGGTTTGCCAGGTCCGCCGGCAAACGC
GTAGACGGCAGTCGGGTGGCAGTGAGACCTTTGTACACCCACTCCGCCAG
CCTGAATGAAGGCAAGGGACAGTGGCAGGGGTTAATGGGCGTGACTTCAA
CGCACTCTCGACAGTCCAGGTTGCACGCTATACAACGGAATCACCCGCTC
AACAGCCTTGTTAACGACGGGTTTCCTGCAGCCCTTCATCTTGCCCTGAA
GCCGCTCGACCCCCGGCCTACTTCCCGCCTCGTCGGTTGCCGTACCGCCA
AATGCCCGCCCCGCCCCGGCCCCGGCCCGGCACTGCAGCCCACTAGCTGT
AGCCTGCCAGCGTGGCCATTCAGAGGTCGTGAAATGGCTCGCGCTGGCCG
GCGCCGGAGTCAACGACAAGGACACGGACATGGGCGCCACCCCCCTCATA
TTTGCCTGCATCTCCGGCCACTACGCTACTGTCCGCGAGCTGTTGAAGGT
GTGTGTGTGTGTGTGTGCACTTGCGTCGTGGCACCACATACTTGTGTTGC
AGAGGCTAGTCACGTGTGTGTGCCGCACTAGTGCCTTTGAGGAGCAGTTG
CGAGTTGCCAGTAGATGCCACAGCCAAACTACTGCAGTACTCCTCCTCCT
CTTCTTCTTCCTCCTCCTCCTGCTCCTCCTCCTCCTCCTCCCCCCCCCCC
TCCTCCTCCTCCTCCTCCTCGTCGTCCTCCTCCTCCTCCTCCTCCCCCCT
CCTCCTCCTCCCCCCCCCCCCCCCCCTCCCCCTCCCTTTCCCCCCCCCCC
TCCTCCCCCGCCTCCTCCCCCTCCTCCCCCTCCTCCTCCCCCTCCAATTC
CCCCTCCTCCCCCTCCTCCCCCTCCTCCCCCTCCCCCTCCTCCTCCTCCT
CCTCCTGCTGCTGCTCCGCGCCCCTTCCTGGCAAGCTGTTTTCGTGAGGT
GGCCAGCACCTCGCCCAGGCCCTAATCCTGCTGCTCTTGCTACTGCACCA
AGTTTATATACAGTACGCACTCTAGTACAGTAAGACAGTGCTGTAGCTGA
CCGGAGGAGGAGCCACTGGACTGCAGTGGGCGTCCCCAGGAGCCGCACGC
CGAGGAAAGCGTGAAATCGCTTGAAAGTGCTAAATACAGTAGCAGTACAG
CCATGCAGCATAGGACGGCAGACCTGATTTTTAAACGTTTGGGTTGTCGA
CTATGCACACGAACCACGGCCATGTCGAAAGGCAAGTCAGTGAGTGCTGT
GCATAGAGTACGGACAAGTATACTTCAAAGCAAGATATGAGGCGCTTGAA
GTACTTGTGGACACATAAGAGTACGAGTAACCTTCCTGCTCACCCGGTGG
CACCCTTCTCCCGACGTGCCTCCTGTAGCTCTATCTTGTTGAGAAGTACT
TGTGAAGTGTCTTGTATTGTACATTCGTGTAGTAGTAGAGCTCTAGTCAT
AGTAGTAGCGGCGGTGATAGTAGTAGTCGTAGTGGCACTGGTAGTAGTCG
TAGTAGTCGTAGTGCGTCGTAGTCCAAAGTAGTAGTAGTGGTAGTAGTCG
TAGTAGCAATACTTGTAGTCGTGTTAGTGAGACAGAGACGAGAGGCAGAG
ACAGAGGCAAGAGAGAGAGAGGGAGAGAGAGAGAACCCGGGGGGGGGGGG
GGGGGGGGGGGGAAGGAGGGAGAGACAGACAGGGAGAGAGACAGACAGAC
GGGCTTTGGAGGGGGACGAATATCCCCCCCCAACATCATCCCGTCTACCG
ACAGATTTCTCCCCTCGCCCCCAACACCTTGCCCCCCCAACTCAACCAGG
CCGGCGCCGATGTGGACGAAGCGTTTGACTCCGAGAACAACTCCATCACA
CCCCTGCACTTTGGGGTGCAGTGCGCGGGGACCTTCATGGCCAGAAAGCA
GCCGTGGGCATCCTACGGGGCCGTGGTGAAGATACTGCTGCAGGGCGGGG
CGTCCGGTGAGTTCGGAGGGAGGGGTGTGTTATTCATATAAATTGTAACG
AGGTACAATCGCACGTGTGTGCGATTGACTGTTCTCGGAGGGAGGGGTCT
CATGGTGGCGGTGACGGTGGTGGGTGCAGGGTTGGCACTCTAGAGGTTAA
TTAGGGCCTATTTGGCCTTCGTTTTAGGCATAGTTGCCCCTGATTGCCTG
TAGTTAAGGGCCGAAAAGGGCTCCACTTATTAGGGGGTAAGTGCCAACCC
TGGTCTGCGGCGGGCGCACGTGTCTGTCTGTGTGTGCTGTACTCAACCTT
GCTTACCGCAGTGGAAAAGAAGGACCGGATGGGGCGCACGCCTCTGCACT
TTGCGGCGGAGCTGGGCCACCTGGAGGTGACGGCCTGGCTGCTGGAGGCG
TCCGCGCCCGTCGGGGAACGGGACAAGAACGGCACCACGCCGCTCCACTT
CGCCTGCAAGGTGCGGCAAAACCACCCTGTCCTGCTGATAAGTAGTCACT
AGTACGATAAAACTCAATCCTTAAATGGGATAACCACTACTGAATACGAG
AACGCTGCACTTCGCCTGCAAGGTGCGGCAAAACCACCCCGCTACTAATG
AACTCTAACAGCGAAAGTCAGGCATGAAAAATGGCGTAGTGGGTCCAGCT
CGCCAGTCGCAAGGTGTTGAAAGCCATGGGCCTGTCGCAACGCCGCTCCA
ATTCGTATGCAAGGCGCGGCCAACCACCCCGTTCTGATGATAGTCACTAG
TACGAGAACACTCAATCCTTAAACGGGATAGCCACTAGTAAGTCACGAAT
ACGAGAACACCCAACCCTTAAATGTGATAGCCACTAATAGGTCACTACAC
TAGTACGGGAACATTCAATCCTTAAACGGGATAACCACTACTAAGTCACT
AATACGAGACCACTCTATCCTTAAGTCACTAATACAAGCAGTCAATCCTT
ACATGGGACAACCACTAGTACGAGAACACTTACTCTCATACACGTGGGAT
TGTACCTCGTTACAATTTATATGTATCACCCCCTTGTCCCTCGCGAATTC
TCTTTTGCCGGCCAGGGTGGACACGTGGCGGTGGTCAAGGCCTTGCTTGA
GGCAGGGGCGGAGGTGAAAGACGTCAATGCAAAGGGGTCTGGGCCGCTGC
ACTTTGCCGCATCCAGTGGGAACGCACAAGTGAGTACTTCGAAGTACTTG
GGGAGTTCGCTCTGTGCGCGGCCCTGCATGAATGACATGGTTCTTACAAG
TACTGGGCCAGTGCGGGGGGGGGAAGTTGCACGCGGCCTTACATGGCGTG
ATTTGTACGAGTACCCCCTCCCACACCTAACATGGCTCTGCCAGGGGAGG
GATGGGCCCTGCTCCGTCTCGACCGAGGCGCTGGTCAATGGTCTCGGGAC
TGCGGCAAGCCCAACGTGAGTATTTTATGGAACAACACGGGGCGAGGTGC
GGTCCACGTCACTAGAGACCTCAACGAGGGCCCTTGCCTAGCTCGCCAGG
GGAAAGTTGTGTGGGGAAGGGGAGGTGGACGGGGAGGAAGAGGGGGAGGA
GGAGGGGGAGGGGTGGGGGGAAACGAGGGAGAGGAATGGGACAGGGCGCG
TGTGTGCACCCCGAGGGGGCGTGGCAGGCGACGGTGCGGCAACGTGAGTA
TATACGAAATATATATATCCCCTGAAATTCCTTCTCTTAGCTACTGTACA
GTATCCCACACTGTCGTTTCAGGACATTTCGAGACTCAAGCCGCCGCCTT
TGCACAGGGTTGGCACTTAAGAGGTTGCTTAGGGCCGTGTATGCCTTCAT
TTTAGGTCTACTTGCCCCTAATTACCTCTAGTCAAGGGCCTAAAAGGGCG
CCGCTTGGGGTTAAGTGCCAACCCTGCCTTTGCAAACCCCGGGGCACGTG
CGCGGACGGCAGGTGTGCAGCATCCTGGTGGGCAAAGGCTGCCGGGTGAC
GTTTCAAGACTTGAGTCTGCTT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig102:129343..133664+

>mRNA_S-ischiensis_contig102.1746.1 ID=mRNA_S-ischiensis_contig102.1746.1|Name=mRNA_S-ischiensis_contig102.1746.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1614bp|location=Sequence derived from alignment at S-ischiensis_contig102:129343..133664+ (Schizocladia ischiensis KU_0333)
GTCATCGCGCGCTCGACAATTTGCTTGGACGACATGACGAGCTCCAGCGC
ACCGGGTACAACGACTGAGCGCCTCTTCGCGGCGGCAGAGGCCGGAGACG
TCGACGCAATCACGGCACTCGTGGCTGCGGGCGCTTCCGTGAACGAGGTG
AACGAGAGAGGAGAGAGGTCATCGCGCGCTCGACAATTTGCTTGGACGAC
ATGACGAGCTCCAGCGCACCGGGTACAACGACTGAGCGCCTCTTCGCGGC
GGCAGAGGCCGGAGACGTCGACGCAATCACGGCACTCGTGGCTGCGGGCG
CTTCCGTGAACGAGGTGAACGAGAGAGGAGAGAGCCCACTAGCTGTAGCC
TGCCAGCGTGGCCATTCAGAGGTCGTGAAATGGCTCGCGCTGGCCGGCGC
CGGAGTCAACGACAAGGACACGGACATGGGCGCCACCCCCCTCATATTTG
CCTGCATCTCCGGCCACTACGCTACTGTCCGCGAGCTGTTGAAGCCCACT
AGCTGTAGCCTGCCAGCGTGGCCATTCAGAGGTCGTGAAATGGCTCGCGC
TGGCCGGCGCCGGAGTCAACGACAAGGACACGGACATGGGCGCCACCCCC
CTCATATTTGCCTGCATCTCCGGCCACTACGCTACTGTCCGCGAGCTGTT
GAAGGCCGGCGCCGATGTGGACGAAGCGTTTGACTCCGAGAACAACTCCA
TCACACCCCTGCACTTTGGGGTGCAGTGCGCGGGGACCTTCATGGCCAGA
AAGCAGCCGTGGGCATCCTACGGGGCCGTGGTGAAGATACTGCTGCAGGG
CGGGGCGTCCGGCCGGCGCCGATGTGGACGAAGCGTTTGACTCCGAGAAC
AACTCCATCACACCCCTGCACTTTGGGGTGCAGTGCGCGGGGACCTTCAT
GGCCAGAAAGCAGCCGTGGGCATCCTACGGGGCCGTGGTGAAGATACTGC
TGCAGGGCGGGGCGTCCGTGGAAAAGAAGGACCGGATGGGGCGCACGCCT
CTGCACTTTGCGGCGGAGCTGGGCCACCTGGAGGTGACGGCCTGGCTGCT
GGAGGCGTCCGCGCCCGTCGGGGAACGGGACAAGAACGGCACCACGCCGC
TCCACTTCGCCTGCAAGTGGAAAAGAAGGACCGGATGGGGCGCACGCCTC
TGCACTTTGCGGCGGAGCTGGGCCACCTGGAGGTGACGGCCTGGCTGCTG
GAGGCGTCCGCGCCCGTCGGGGAACGGGACAAGAACGGCACCACGCCGCT
CCACTTCGCCTGCAAGGGTGGACACGTGGCGGTGGTCAAGGCCTTGCTTG
AGGCAGGGGCGGAGGTGAAAGACGTCAATGCAAAGGGGTCTGGGCCGCTG
CACTTTGCCGCATCCAGTGGGAACGCACAAGGTGGACACGTGGCGGTGGT
CAAGGCCTTGCTTGAGGCAGGGGCGGAGGTGAAAGACGTCAATGCAAAGG
GGTCTGGGCCGCTGCACTTTGCCGCATCCAGTGGGAACGCACAAGTGTGC
AGCATCCTGGTGGGCAAAGGCTGCCGGGTGACGTTTCAAGACTTGAGTCT
GCTTGTGTGCAGCATCCTGGTGGGCAAAGGCTGCCGGGTGACGTTTCAAG
ACTTGAGTCTGCTT
back to top