mRNA_S-ischiensis_contig100.1685.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig100.1685.1
Unique NamemRNA_S-ischiensis_contig100.1685.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match: D7FKQ4_ECTSI (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ4_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 1.640e-94
Identity = 136/170 (80.00%), Postives = 156/170 (91.76%), Query Frame = 3 
Query:   60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAFV 569
            MANTLRPYLN I+GTLDAALC+RNFPSQTVERHNKPEVE RSSKELLLNPVTICRNEQ E+CLIE+SVNSVRVSI VKQAD++E ILC KFT+FLMQR+E F++MRRKP +G+DISFL+TH+HLE +WKHKL+ F+IQFMED+DKEIS MKIAINARGRI+A +FM  FV
Sbjct:    1 MANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEVETRSSKELLLNPVTICRNEQ-EKCLIETSVNSVRVSIAVKQADEIETILCHKFTSFLMQRAEQFVVMRRKPAEGFDISFLVTHSHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQFV 169
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BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match: A0A836CIE5_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIE5_9STRA)

HSP 1 Score: 280 bits (716), Expect = 5.450e-93
Identity = 136/169 (80.47%), Postives = 155/169 (91.72%), Query Frame = 3 
Query:   60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAF 566
            MANTLRPYL TI+ TLDA+LC+RNFPSQTVERHNKPEVEV+SSKELLLNP+TICRNEQ ERCL+ESS+NSVRVSIGVKQAD++E+ILC+KFT FLMQRSE FI+MRRK   GYDISFLITH HLE MWKHKL+ FVI+FMED+DKEIS MKIAINAR RIVA+E+++ F
Sbjct:    1 MANTLRPYLTTIRHTLDASLCLRNFPSQTVERHNKPEVEVQSSKELLLNPITICRNEQ-ERCLVESSINSVRVSIGVKQADEIESILCRKFTRFLMQRSEQFIVMRRKAAPGYDISFLITHAHLEGMWKHKLVDFVIEFMEDIDKEISGMKIAINARARIVASEYVRQF 168
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BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match: A0A067C4Y9_SAPPC (Actin-related protein 2/3 complex subunit 4 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C4Y9_SAPPC)

HSP 1 Score: 258 bits (660), Expect = 1.710e-84
Identity = 123/169 (72.78%), Postives = 147/169 (86.98%), Query Frame = 3 
Query:   60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAF 566
            MANTL PYLN I+ TLD ALC++NFPSQ VERHNKPEVEVR SKEL+L P+ ICRNE  E+C IE S+NS RVSI +KQAD++E+ILC KF+ FLMQR+E FII+RRKP +GYD+SFLITH+HLEN++KHKL+ F+IQFMED+DKEIS MKI +NARGR+VATEFMK F
Sbjct:    1 MANTLAPYLNAIRATLDGALCLQNFPSQVVERHNKPEVEVRMSKELILTPIVICRNEN-EKCCIEPSINSARVSICIKQADEIESILCHKFSRFLMQRAEQFIILRRKPIEGYDMSFLITHSHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 168
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BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match: A0A024TP77_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TP77_9STRA)

HSP 1 Score: 258 bits (660), Expect = 9.260e-84
Identity = 126/171 (73.68%), Postives = 145/171 (84.80%), Query Frame = 3 
Query:   60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAFVA 572
            MANTL PYLN I+ TLD ALC++NFPSQ VERHNKPEVEV  S+ELLLNPV ICRNE  ERC IE S+NS RVSI +KQAD++E ILC KF+ FLMQR+E FIIMRRKP +GY ISFLI HTHLEN++KHKL+ F+IQFMED+DKEIS MKI +NARGR+VATEFMK F +
Sbjct:   50 MANTLAPYLNAIRSTLDGALCLQNFPSQVVERHNKPEVEVGLSRELLLNPVVICRNEN-ERCCIEPSINSTRVSICIKQADEIETILCHKFSRFLMQRAEQFIIMRRKPIEGYSISFLIVHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQFTS 219
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BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match: W4GJL2_9STRA (Actin-related protein 2/3 complex subunit 4 n=5 Tax=Aphanomyces TaxID=100860 RepID=W4GJL2_9STRA)

HSP 1 Score: 256 bits (654), Expect = 1.450e-83
Identity = 124/171 (72.51%), Postives = 145/171 (84.80%), Query Frame = 3 
Query:   60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAFVA 572
            MANTL PYLN I+ TLDAALC++NFPSQ VERHNKPE+EV  S+ELLLNPV ICRNE  E+C IE S+NS RVSI +KQAD++E ILC KF+ FLMQR+E FIIMRRK  +GY ISFLI HTHLEN++KHKL+ F+IQFMED+DKEIS MKI +NARGR+VATEFMK F +
Sbjct:    1 MANTLAPYLNAIRSTLDAALCLQNFPSQVVERHNKPEIEVGLSRELLLNPVVICRNEN-EKCCIEPSINSTRVSISIKQADEIETILCHKFSRFLMQRAEQFIIMRRKAIEGYSISFLIIHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQFTS 170
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BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match: A0A2D4BNX3_PYTIN (Actin-related protein 2/3 complex subunit 4 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNX3_PYTIN)

HSP 1 Score: 256 bits (653), Expect = 1.980e-83
Identity = 125/169 (73.96%), Postives = 146/169 (86.39%), Query Frame = 3 
Query:   60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAF 566
            MANTL PYL  I+ +LDAALC+RNFPSQ VERHNKPEVE+R SKELLLNP+ I RNE  E+CLIE S+NS RVSI +KQAD++E ILC KFT FLMQR+E FIIMRR P +GY +SFLITHTHLE+++KHKL+ F+IQFMED+DKEIS MKI++NARGRIVATEFMK F
Sbjct:    1 MANTLAPYLTAIRNSLDAALCLRNFPSQVVERHNKPEVELRLSKELLLNPILIARNEN-EKCLIEPSINSTRVSICIKQADEIETILCHKFTRFLMQRAEQFIIMRRVPVEGYHMSFLITHTHLESLYKHKLIDFIIQFMEDIDKEISEMKISLNARGRIVATEFMKQF 168
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BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match: K3WN29_GLOUD (Actin-related protein 2/3 complex subunit 4 n=27 Tax=Oomycota TaxID=4762 RepID=K3WN29_GLOUD)

HSP 1 Score: 253 bits (646), Expect = 2.220e-82
Identity = 123/168 (73.21%), Postives = 144/168 (85.71%), Query Frame = 3 
Query:   63 ANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAF 566
            ANTL PYL  I+ +LD+ALC+RNFPSQ VERHNKPEVE+R SKELLLNP+ ICRNE  E+CLIE SVNS RVSI +KQAD++E ILC KF  FLMQR++ FIIMRR P +GYD+SFL+ HTHLENM+KHKL+ F+I FMED+DKEIS MKI++NARGRIVATEFMK F
Sbjct:    1 ANTLAPYLTAIRHSLDSALCLRNFPSQVVERHNKPEVELRLSKELLLNPILICRNET-EKCLIEPSVNSTRVSICIKQADEIETILCHKFNRFLMQRADQFIIMRRVPVEGYDMSFLVIHTHLENMYKHKLIDFIITFMEDIDKEISEMKISLNARGRIVATEFMKQF 167
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BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match: A0A3R6WI01_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WI01_9STRA)

HSP 1 Score: 256 bits (655), Expect = 3.040e-82
Identity = 125/170 (73.53%), Postives = 144/170 (84.71%), Query Frame = 3 
Query:   63 ANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAFVA 572
            ANTL PYLN I+ TLD ALC++NFPSQ VERHNKPEVEV  S+ELLLNPV ICRNE  ERC IE S+NS RVSI +KQAD++E ILC KF+ FLMQR+E FIIMRRKP +GY ISFLI HTHLEN++KHKL+ F+IQFMED+DKEIS MKI +NARGR+VATEFMK F +
Sbjct:  104 ANTLAPYLNAIRSTLDGALCLQNFPSQVVERHNKPEVEVGLSRELLLNPVVICRNEN-ERCCIEPSINSTRVSICIKQADEIETILCHKFSRFLMQRAEQFIIMRRKPIEGYSISFLIVHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQFTS 272
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BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match: A0A7S2BQQ1_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQQ1_9STRA)

HSP 1 Score: 253 bits (646), Expect = 3.220e-82
Identity = 119/169 (70.41%), Postives = 145/169 (85.80%), Query Frame = 3 
Query:   60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAF 566
            MA TLRPYLN I+ TLDAALC+RNFPSQ VERHNKPE+E++ +KELLLNP+TICR +  ERCLIE SVNSVR+SI +KQAD++E +LC KFT FLMQR++ FIIMRRK  +GY ISFL+TH HLE MWK+KL+ F+I FMED+D+EISAMK+A+NAR R+VA EF+K F
Sbjct:   11 MAATLRPYLNCIRSTLDAALCLRNFPSQIVERHNKPEIEIKGNKELLLNPITICRTKT-ERCLIEPSVNSVRISIQIKQADEIEEVLCHKFTRFLMQRADQFIIMRRKAKEGYSISFLVTHAHLEKMWKNKLIDFIISFMEDIDREISAMKLAVNARARVVAKEFLKEF 178
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BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Match: A0A7S2CG59_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CG59_9STRA)

HSP 1 Score: 253 bits (645), Expect = 3.370e-82
Identity = 123/171 (71.93%), Postives = 147/171 (85.96%), Query Frame = 3 
Query:   60 MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNPVTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSEHFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAMKIAINARGRIVATEFMKAFVA 572
            MA+TL+PYL  ++ TL+A LC+RNFPSQTVERHNKPEVEVR SKELLLNP+TICR ++ ERCLIE SVNSVR+SI +KQAD+LE +LC KFT FLMQR++ FIIMRRK  +GY ISFL+TH HLE MWK KL+ FVIQFMED+DKEISAMK+A+N+R R VA EF++ FVA
Sbjct:    1 MASTLKPYLACVRTTLNAGLCLRNFPSQTVERHNKPEVEVRGSKELLLNPLTICRTDK-ERCLIEPSVNSVRISIQIKQADELEEVLCHKFTRFLMQRADQFIIMRRKAKEGYSISFLVTHAHLEKMWKDKLIDFVIQFMEDIDKEISAMKLAVNSRARNVAQEFVREFVA 170
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig100.1685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKQ4_ECTSI1.640e-9480.00Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]
A0A836CIE5_9STRA5.450e-9380.47Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]
A0A067C4Y9_SAPPC1.710e-8472.78Actin-related protein 2/3 complex subunit 4 n=4 Ta... [more]
A0A024TP77_9STRA9.260e-8473.68Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W4GJL2_9STRA1.450e-8372.51Actin-related protein 2/3 complex subunit 4 n=5 Ta... [more]
A0A2D4BNX3_PYTIN1.980e-8373.96Actin-related protein 2/3 complex subunit 4 n=2 Ta... [more]
K3WN29_GLOUD2.220e-8273.21Actin-related protein 2/3 complex subunit 4 n=27 T... [more]
A0A3R6WI01_9STRA3.040e-8273.53Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S2BQQ1_9STRA3.220e-8270.41Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]
A0A7S2CG59_9STRA3.370e-8271.93Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig100contigS-ischiensis_contig100:297096..302831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.8
Seed ortholog evalue1.3e-74
Seed eggNOG ortholog2880.D7FKQ4
Preferred nameARPC4
KEGG rclassRC00048,RC00116
KEGG koko:K00275,ko:K05755,ko:K16608
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,ko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map00750,map01100,map01120,map04144,map04666,map04810,map05100,map05130,map05131,map05132
KEGG ModuleM00124
GOsGO:0000001,GO:0000147,GO:0000902,GO:0001667,GO:0002009,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003779,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005885,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006928,GO:0006950,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008360,GO:0009611,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0010638,GO:0012506,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016477,GO:0019899,GO:0022603,GO:0022604,GO:0022607,GO:0022610,GO:0023052,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030041,GO:0030139,GO:0030175,GO:0030479,GO:0030659,GO:0030666,GO:0030670,GO:0030832,GO:0030833,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031143,GO:0031252,GO:0031334,GO:0031410,GO:0031982,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032535,GO:0032940,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0033627,GO:0034314,GO:0034622,GO:0038093,GO:0038094,GO:0038096,GO:0040011,GO:0042060,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044396,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045010,GO:0045335,GO:0046903,GO:0048013,GO:0048308,GO:0048311,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048856,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051258,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051646,GO:0051674,GO:0051716,GO:0060429,GO:0061024,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090130,GO:0090132,GO:0097435,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:0098858,GO:0099568,GO:0110053,GO:0120025,GO:1902903,GO:1902905
EggNOG free text desc.Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament
EggNOG OGsKOG1876@1,KOG1876@2759
EC1.4.3.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionActin-related protein 2/3 complex subunit ARPC4 or p20-Arc (Arp2/3 complex 20 kDa subunit)
Ec32 orthologEc-21_001730.1
Exons5
Model size786
Cds size516
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.8926637-UTR-S-ischiensis_contig100:297095..2971541622815547.8926637-UTR-S-ischiensis_contig100:297095..297154Schizocladia ischiensis KU_0333UTRS-ischiensis_contig100 297096..297154 +
1695739762.406937-UTR-S-ischiensis_contig100:297095..2971541695739762.406937-UTR-S-ischiensis_contig100:297095..297154Schizocladia ischiensis KU_0333UTRS-ischiensis_contig100 297096..297154 +
1622815547.9725425-UTR-S-ischiensis_contig100:302620..3028311622815547.9725425-UTR-S-ischiensis_contig100:302620..302831Schizocladia ischiensis KU_0333UTRS-ischiensis_contig100 302621..302831 +
1695739762.4914997-UTR-S-ischiensis_contig100:302620..3028311695739762.4914997-UTR-S-ischiensis_contig100:302620..302831Schizocladia ischiensis KU_0333UTRS-ischiensis_contig100 302621..302831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.903398-CDS-S-ischiensis_contig100:297154..2971571622815547.903398-CDS-S-ischiensis_contig100:297154..297157Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 297155..297157 +
1695739762.4316995-CDS-S-ischiensis_contig100:297154..2971571695739762.4316995-CDS-S-ischiensis_contig100:297154..297157Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 297155..297157 +
1622815547.9143727-CDS-S-ischiensis_contig100:297394..2975131622815547.9143727-CDS-S-ischiensis_contig100:297394..297513Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 297395..297513 +
1695739762.4492462-CDS-S-ischiensis_contig100:297394..2975131695739762.4492462-CDS-S-ischiensis_contig100:297394..297513Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 297395..297513 +
1622815547.9343746-CDS-S-ischiensis_contig100:298660..2987121622815547.9343746-CDS-S-ischiensis_contig100:298660..298712Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 298661..298712 +
1695739762.4597619-CDS-S-ischiensis_contig100:298660..2987121695739762.4597619-CDS-S-ischiensis_contig100:298660..298712Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 298661..298712 +
1622815547.9472752-CDS-S-ischiensis_contig100:300769..3009281622815547.9472752-CDS-S-ischiensis_contig100:300769..300928Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 300770..300928 +
1695739762.4723444-CDS-S-ischiensis_contig100:300769..3009281695739762.4723444-CDS-S-ischiensis_contig100:300769..300928Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 300770..300928 +
1622815547.9619746-CDS-S-ischiensis_contig100:302437..3026201622815547.9619746-CDS-S-ischiensis_contig100:302437..302620Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 302438..302620 +
1695739762.482058-CDS-S-ischiensis_contig100:302437..3026201695739762.482058-CDS-S-ischiensis_contig100:302437..302620Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 302438..302620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig100.1685.1prot_S-ischiensis_contig100.1685.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig100 297155..302620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig100.1685.1

>prot_S-ischiensis_contig100.1685.1 ID=prot_S-ischiensis_contig100.1685.1|Name=mRNA_S-ischiensis_contig100.1685.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=172bp
MANTLRPYLNTIKGTLDAALCIRNFPSQTVERHNKPEVEVRSSKELLLNP
VTICRNEQQERCLIESSVNSVRVSIGVKQADDLEAILCKKFTAFLMQRSE
HFIIMRRKPTQGYDISFLITHTHLENMWKHKLMAFVIQFMEDVDKEISAM
KIAINARGRIVATEFMKAFVA*
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mRNA from alignment at S-ischiensis_contig100:297096..302831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig100.1685.1 ID=mRNA_S-ischiensis_contig100.1685.1|Name=mRNA_S-ischiensis_contig100.1685.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5736bp|location=Sequence derived from alignment at S-ischiensis_contig100:297096..302831+ (Schizocladia ischiensis KU_0333)
CAGCAGGGCTCGCCCGCGGCACCGCGCGGAGGGGACCGGAAACAGCGGGG
AGGACCACCATGGTGAGTCGGAGGGACTGGTACGTGGAGTTAAAAGGCTC
GCGCGAAGCGTGCCCGCCCTAAACCGCGGTCTTTGTGGCATGCGACGGGG
TCAGCCAACCGGGGCGGTTTTCGGCACCGTGAGCAGCTGGCTGCTTTTCC
TGCGCCCGCGCCCATACAGCTGAGCTGATTCCTTTGCCGGGCTCGCCCTT
GCGCTTCCCCCTGTCGCCGACGCTCTCCGCGCCCCTCCTCCTCGGCCAGG
CGAATACATTGCGACCGTACCTCAACACCATTAAGGGGACTCTGGATGCC
GCGCTGTGTATCCGAAACTTCCCCTCTCAGACGGTGGAGCGACACAACAA
GCCGGAGGTGGAAGTAAGGCGAGTGGGACCCGTGTTGGCGCGTCGATGCC
GATTGATTCCTCTGTCATCAACAGCAAGGATGTCTATGGGGCGACAACGA
CGCCATCTGTTGTCGAAGTACTTGTACTACTTCTAAGTACTGTAGTACTC
GTACTGCAGCATGCCTGTTATGTATCGTGAGTCATAGTACCTGCAAGCAC
TAAATCCGAATAGTTGGTCCCGCCAGATCGATGCAACATCCGTGCGCGGT
TTTCATCGGTCTGTTTCATGTTCCGTGGGTCTACAAGTACTCGCACAAGT
ACTCGCTGCCATAGGGCCGTTTTTGTGGCGTGACACCGAATCAGGCTTCC
ATTCCTTCCATCATTCTCCCATTAAGATGGAATAATGACACATTTTGTAA
AAACAAATAATGTGTTCTTCCATTATTCCGATTCATGGAAAATGCGCCGT
TTGCAAAGACGGCCCAATCGCTGGCTCGGGCCCGGCTACGCGCCAAACAG
AGTCCCTCGATTGGCCCTGGTGTCCGCATAGGGACACCTCTTCTTTCCCA
CTCGCTTGTTTATCTTCTTGCATAAAGAAGGGTTGAGTAGAGCTTAACTC
TAAGAGGACAACGGGACACCTGTCCCACGATGAAGCCCTGTGGTTTAGTT
TCCGAATAGTTGGTGTCCTCCAAGGTTGCTGCTGCGAACCCAGGCGCTCG
AGTGTGGTTTTGCTAGTACTTGGGAAAGCAGCAGCTGATCTGATCTGATG
TGATGTCTAGGTACACTGTGCGCTTTTGTGCGTCCTGCGTGCTGCTTCTT
CGCCATGCCTTCGTGCTGAACGTGAACGTGGTGTGATGTCCAACTACTGA
GAACACATTCACTAGAGTTCACCTGACATCACATCACACCAGCTCCCCCG
CATCGTGCTGAACGTGAACGTGGTGTGATGTCCAACTACTGAGAACACAT
TCACTAGAGTTCACCTCACATCACATCACACCAGCTCCCCCGCATGGTAC
CCTGCACGCTACAACTTTTTTTCTATGCCTCTGTGTCCCTCCCACCCTCC
CTTTCTCCCTCCCTCCCCCCCTCCCTTCCTCCTTCCTTCCCTCCCTCCAT
CCATCCTTCCCTCCCTCCTTCCCCGTCTCCTGCCTGTTTTATCGCGGTCC
TCGTCGGCCAATCAGGTCCAGCAAAGAGCTGCTGCTCAACCCGGTGACCA
TCTGCCGCAACGAGCAGGTGTGTTAACCCTTTTACCCCTGCTAAATTGGA
CTTACACACTAAAACCCTATGATTACATGGACCCCAGGGGGAAAACGGTT
AGTGATGCCCGAAGTGCGCTGTACTGTACAATGTGCATGTAGTGTACTGC
ACGACTGTGTGTATACTGCTGCACTTGTGTGTACTTATCTGTACTGTGTG
TACTTGTATACTAGTACTGTGCCCTAGTTTGCTATGTATGCAAAGAGCTC
CGCTCAACCCGGTGACCATCTGCCGCAGCGAGCAGGTGTGGTGATTCGTA
TAAATTGTAGCGAGGTACAATCGCACGTGTGTGAGATTGAGTGTTCTCGT
ATTAGTGGTTTTCTCATTTAAGAACTGATTGTTCTTATGTTAGTGATTGT
CACATCAACAGGCTAGGAACAAGGAGCAGGTGTGGTAACAATACCCGACG
TGTGCGGTACCGTACAATGCGTAGTGTACTGCATGACTGTGTGTATACTG
CTGCCCTCATGTGTGTGTACTTGACTGTACTGTGTGTACTTGTATACTAC
CGTAGTACTTCGAAGTATTGCAACGAGCAGGTGTGGTAACAATGCCCGAC
GTGTGCTGTACTGTACTTGGAAGTACAATATATACGTATATATATATGTG
TGTGTGTACTCACGTGGTGGCGCTCGTCTAGGCGAATGGTCTACCGACGG
CTTTAGCGAGCCCAAGGTCGCGAGTTCGATTCCCTGTGTGGAGTCGATTT
CCCGCGAAATATGGACCCCTCCGGAAACACGTGCAAAATTGACAAAACTC
ATGAGAGCCGTACCGGCTTGTCGGCCCCGGGCCCAATGGCAAAGTCGGGA
TCGGCGGGCGCCTGTCCAGTGAAAAACTGGAATGCTCCGGCCCGGCGTAG
TAGGGCCGCGTGGCCAATGGCCGTAAGGCTACCCCGTATGGGGGCTGACC
CCAGGCCAGCACGGAGTATACTGGCTCGAGTCGGTGGCAAGCACAGGATG
GGATCCTCATCCGCCATGAGTACACACACTCACGTGGTGCTTGCCGTAGT
CCCGAGCCCATCGACCCCGCGCCTCGTTCGAGACGGAGCAGGACAATGTG
TAGTGTACTGCACGACTGTGTGTATACTGCTACGCTTGTATGTACTTCAC
TGTACTAACCCTGTGACCATCTGCTGCAAACGAGCAGCTGTGCTAGCGAT
ACCCCCCGACGTAAGCTGTACTGTACAATGTGTGCAGCAGCGTACTTCAC
GACTGTGTGTATAGTGCTGCTATCACTTGTGTGTACTTCACTGTACCTGT
GTGTACTTGTATACCACTACTACGTGGTAGTACTGCTCCGTCTCGACCGA
GGCGCGTGGTCGATGGTCTCGGGACTATGGCAAGCACAATGTGCGTGCAT
ATACATAGCACTGTACCGTAGTTTACTATGCCGCACCCTTTTGTGACATG
TATACTTGTGTGTACTCCGTATTTGTCTACTACTGTACTGTACTAGAGTA
TACTTTACTATGCCGCACCCTTTTTGTGGAAAACTATACCGTACCTTCTC
CGTCTCAGCGCTGCCACGACCACAACCACCATTGATCGCCACATCCTTCA
CCAATAACACCACCTCCACCACCACCGCCGCCGCCGCCGCCGCCACCGCC
ACCGCCGCCACCACCACCACCGCCACTTGACCGCCCCCACCACTGCTGCC
ATCACTGCCTCCACGACAACCAGCACCACCGCCGCCGCCACCACAACCAC
AACCACCACCAGCACTCGACCGCCCCACTACCGCTACCATCACTGCCGCC
GCCTCCACAACCGCCACCAACACTCACCACCCCCAACGCCACCTCCGGCG
CCGTTTTTCCTTCTTTTCCTTTCCATTCCCCGTCATTTTCTCTTGCCCCC
CCCTCCCCCCCCTTCTTTTTTTTGTTGTTTGTACTTGTTTGATGTGATAA
TCGCTATTACTACGTAGTATACGAACGCTCAGCCTTCAATGGGATAGCCA
CTAATGCGAGAACACTCAATCTGACACATGTGCGATTGTACCTCGTTACA
ATTCTTGACTTTTTGCAAATTGAGCAGGAGCGCTGCCTTATCGAGAGCAG
CGTGAACAGCGTGCGTGTGAGCATCGGCGTCAAGCAAGCGGACGATTTGG
AGGCCATTTTGTGCAAAAAGTTCACCGCCTTCCTCATGCAGCGCTCCGAG
CACTTCATCATCATGCGCCGGAAGCCCACGCAGGTGATTTTTGTTTTCAT
GTACTGTATGCCATACCGTGCGAGGTGATGTGGTGTCAACACTGTACAGT
GGAGTACGTTTGCAGACTCCTGCGATATGAGGACTTTCATCATCATGCGC
CGGAAGCCCTCGCGGGTGATTATTTTTCATGTGTGTCATGCTGTGCGATG
GGATGTGGTGTCAACACTGTACGGTACTTTACCAGACTCCTGTTGTGATG
TGACGTGATGTGATGTGATGCGGTACTTTAGTAGACTCCTGTATTGTGAG
GGCTTGTTGCGATGTGATATGATGTGGTACCAACGCCACAGTACTTTACT
CCTGCACTATGAGGGCGCCGCCATTACACACCGGAAGCCCGAGCGGGTGA
TTATTCCTAATGTATGTTGTGTGGTGTGATGTGATGTGATATATGTACGA
GTATATATCCTACTACATATGCGGTATGACGTGGTTTGCACTCTAAGTGC
ACTGTACTGCAGTTTGACATCACATCACACCACACCACATCGCATCTTTT
TTGTCCAGAGGCTAATGCACTGTAGTTTGACATCACATCACATCTTTTTT
TCGAGAGGCACTCTAATGCGCTGTAGTTTGACATCACATCACATTTTTTT
CGAAAGGCACTCTAATGCGCTGTAGTTTGACGTCACATCACATCTTTTTT
CGAGAGCCAGTACCGTAGTAGAGTACAACGCCCGACGTTAATCATTTTAC
CCCTGGCAAATTGGACTTGCACACTAAAATCCTATTATTGTACGGGCCAC
AGAGGTAAAAGGGTTAACACAGCCGCTGCCGTGGTCTCTCGCTGCCCTCC
TCCGCCCGCCTGGGACATGAAATCAGTGCCGCCGCCGAAATACATACGCT
TACTTCGAGTGTTCATATGAAAAAACTCACAAACGTGCGATTGCACCTCT
TTACGATTTTTTAAATTATTGTGATGGTATGCGAGCCCCAGGCTATATAT
GGTTCACCGCCGAAAATACGTATGTACTTGAAGATCATGTACTCGAGTAC
TCTACTCACTGGCTTGTCTTGAAAAATATAACCTTGTCTTGAAAAATATA
ACCTTGTGTGCTTTTAGCTGGCATGCCTAAGTCAAAAATTCCCCCCCAAA
AACAAACAAAAAAACAGGAGCAGGCCTACAATAAGTCAAAACTTCCCCCC
CTAAAGCAAGAACAAACAAAAAAACAAACGGGGCTATCACACACGCGCAC
CTGGAGAACATGTGCGTGTGTGCGTGTGTAGCTGACATCCCTAAGTCAAA
ACTTCCCCCCACAAAACAAACGAAAACAAAAGCAATTTTCAACTCGCTCC
ACACGAAAAACAGGGCTACGACATCAGCTTCCTGATCACGCACACGCACC
TGGAGAACATGTGTGTGTGTGTATGTGTGCGTGCGTGCGTGTGTAGCTGA
CATCCCTAAGTCCAAACTTCCCCGCACAAAACAAACAAAAAACAACAGTT
TTCTACGCGCTTGTTTATCTTCATGCAAAAAAACAAAAACAGGGCTACGA
CATCAGCTTCCTGATCACGCACACGCACCTGGAGAACATGTGGAAGCACA
AGCTGATGGCCTTTGTCATCCAGTTCATGGAGGATGTCGACAAGGAGATC
AGCGCAATGAAGATAGCCATCAACGCGAGGGGGCGCATCGTGGCGACCGA
ATTCATGAAGGCCTTCGTTGCATGAGTCCTGAAAGCAAAAAAAATAAAAA
TCTGCAACCTTAGTAACGATGATGTACACAACATTGCTTACTGCACAAGG
AGATCAGTGCCATGAAGATCGCCGTCAACGCGAGGGGGCGCATCGTGGCC
ACCGAGTTCATGAAGGCGTTTGTGGCATGAGTGGACTCTGAGGCGTACTC
GTAGGTAACCTTAATAACGATGATTGTAGACAACAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig100:297096..302831+

>mRNA_S-ischiensis_contig100.1685.1 ID=mRNA_S-ischiensis_contig100.1685.1|Name=mRNA_S-ischiensis_contig100.1685.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1032bp|location=Sequence derived from alignment at S-ischiensis_contig100:297096..302831+ (Schizocladia ischiensis KU_0333)
ATGATGGCGAATACATTGCGACCGTACCTCAACACCATTAAGGGGACTCT
GGATGCCGCGCTGTGTATCCGAAACTTCCCCTCTCAGACGGTGGAGCGAC
ACAACAAGCCGGAGGTGGAAGTAAGGCGAATACATTGCGACCGTACCTCA
ACACCATTAAGGGGACTCTGGATGCCGCGCTGTGTATCCGAAACTTCCCC
TCTCAGACGGTGGAGCGACACAACAAGCCGGAGGTGGAAGTAAGGTCCAG
CAAAGAGCTGCTGCTCAACCCGGTGACCATCTGCCGCAACGAGCAGGTCC
AGCAAAGAGCTGCTGCTCAACCCGGTGACCATCTGCCGCAACGAGCAGCA
GGAGCGCTGCCTTATCGAGAGCAGCGTGAACAGCGTGCGTGTGAGCATCG
GCGTCAAGCAAGCGGACGATTTGGAGGCCATTTTGTGCAAAAAGTTCACC
GCCTTCCTCATGCAGCGCTCCGAGCACTTCATCATCATGCGCCGGAAGCC
CACGCAGCAGGAGCGCTGCCTTATCGAGAGCAGCGTGAACAGCGTGCGTG
TGAGCATCGGCGTCAAGCAAGCGGACGATTTGGAGGCCATTTTGTGCAAA
AAGTTCACCGCCTTCCTCATGCAGCGCTCCGAGCACTTCATCATCATGCG
CCGGAAGCCCACGCAGGGCTACGACATCAGCTTCCTGATCACGCACACGC
ACCTGGAGAACATGTGGAAGCACAAGCTGATGGCCTTTGTCATCCAGTTC
ATGGAGGATGTCGACAAGGAGATCAGCGCAATGAAGATAGCCATCAACGC
GAGGGGGCGCATCGTGGCGACCGAATTCATGAAGGCCTTCGTTGCATGAG
GCTACGACATCAGCTTCCTGATCACGCACACGCACCTGGAGAACATGTGG
AAGCACAAGCTGATGGCCTTTGTCATCCAGTTCATGGAGGATGTCGACAA
GGAGATCAGCGCAATGAAGATAGCCATCAACGCGAGGGGGCGCATCGTGG
CGACCGAATTCATGAAGGCCTTCGTTGCATGA
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