mRNA_S-ischiensis_contig100.1682.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig100.1682.1
Unique NamemRNA_S-ischiensis_contig100.1682.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig100.1682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig100contigS-ischiensis_contig100:254140..255713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.4806013-CDS-S-ischiensis_contig100:254139..2543291622815545.4806013-CDS-S-ischiensis_contig100:254139..254329Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 254140..254329 -
1695739760.8257608-CDS-S-ischiensis_contig100:254139..2543291695739760.8257608-CDS-S-ischiensis_contig100:254139..254329Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 254140..254329 -
1622815545.4967113-CDS-S-ischiensis_contig100:255657..2557131622815545.4967113-CDS-S-ischiensis_contig100:255657..255713Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 255658..255713 -
1695739760.848938-CDS-S-ischiensis_contig100:255657..2557131695739760.848938-CDS-S-ischiensis_contig100:255657..255713Schizocladia ischiensis KU_0333CDSS-ischiensis_contig100 255658..255713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig100.1682.1prot_S-ischiensis_contig100.1682.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig100 254140..255713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig100.1682.1

>prot_S-ischiensis_contig100.1682.1 ID=prot_S-ischiensis_contig100.1682.1|Name=mRNA_S-ischiensis_contig100.1682.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=82bp
SLWDLFVSGRLSFRGFYSWFVLFDATGATTAQGQLPSPVLATGTTPAIAQ
TGVGMTSGNRGMQGPVPVPQQSAQGLPPPPPL
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mRNA from alignment at S-ischiensis_contig100:254140..255713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig100.1682.1 ID=mRNA_S-ischiensis_contig100.1682.1|Name=mRNA_S-ischiensis_contig100.1682.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1574bp|location=Sequence derived from alignment at S-ischiensis_contig100:254140..255713- (Schizocladia ischiensis KU_0333)
AGCCTGTGGGACTTGTTTGTCTCCGGAAGGCTCAGTTTCCGGGGGTTCTA
TTCCTGGTGAGCCGGTGTCCGACAGTGGTGGAATATCTAAGCAAAACAGC
TTATTTATCCTCTTTGGTTTTATTTGTTTTTCTGCTCTGTGTGCCCTGCG
AGTGATTGCGAGTGAAGAGACGGGCTTCCCGGGATGGGGGGCCCTGAACT
CGCGTAAGTAGGAACACCTCTTTTTTCCCGCTCGATTTTTATCATCATGC
CACAAACTTCTTTATCGACAGTACTGATCTGTGTATGTATCGATAGTCGA
TATTCGATAGTTTGACCCACACTAAATCCAATTACTAGTAGCTAGTAGCA
CCACCCACAAAATCAGTCGATCCCGATAGCTATCTACTGATCGATGTTCC
ATCACTGGTGCCTGACGACTGCCCGTACTAGAGTTCCAGATATGTAATGT
GATGTGATGTGTACTCTAATTTACTGTAGTTTGACATCACATCACGTCAC
CATCACATCAAATCACAAGCCGCCGGCCGGTGGCATGCGCGGGACATGGG
GGAATAACAACCCTGTCCGATGTGAGCACGTACTGTGATGTGATGTGCAA
TCTAATTTACTGTAGTTTGACATCACATCACATCGCCATCACATCAAATC
ACAGGCCGACGGTGGCATGCATGGGACACGGGGTAAAACTTCCCGACATG
AAGGGTTGTGAACTGGCGCCGGTTACTACCGGTCGGTACCGGTTAACTGG
TTTAACTGGTTAACCGACCGGTGGCCAATCAACTCCATCACCACCACCAC
CACCACCACCACCACCACCACCACCACCGCCACCGCCACCGTCACCACCA
TCACCGCCACCGTCACCACCACCATCACAACCACCGCCACCACCACTGCC
ACCACCACCACCACCACCACCACCACCACCACCACCACCGCCACCACCGC
CATCACCACCACCACCACCACCACCACCACCACCACCACCACCACCCACC
ACCACCGTCACCACCACCACCACCGCCACCACCACCACCACCACCACCAC
CGCCTCCACCACCACCAACACCGCCACCACCACCACCACCACCACCACCA
CCGCCACCACCGCCACCACCATCACCACCACCAACACCGCCACCACCGCT
ACCACCACCGCCACCAACCACCGCCACCACCACCACCACCACCACCACCA
CCACCACCACCAATACCACCACCACCACCGCCACCACCACCACCACCACC
GCCAACACCGCCAACACCGCCACTACTACCACCGCCACCACAACCACAAC
CACCACCGCCGCCGCCACCACGACCACCACCACCACCACCACCACCACCA
CCGCCACCACCTACCTCTACAACACCCCCCACAGGTTTGTGCTCTTTGAT
GCCACGGGCGCCACCACGGCCCAGGGGCAGCTGCCGTCCCCGGTACTCGC
GACAGGCACCACGCCCGCCATCGCCCAGACAGGCGTGGGCATGACGAGCG
GGAATCGCGGCATGCAAGGGCCAGTGCCGGTGCCGCAGCAATCGGCTCAG
GGACTGCCGCCTCCTCCTCCTCTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig100:254140..255713-

>mRNA_S-ischiensis_contig100.1682.1 ID=mRNA_S-ischiensis_contig100.1682.1|Name=mRNA_S-ischiensis_contig100.1682.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=492bp|location=Sequence derived from alignment at S-ischiensis_contig100:254140..255713- (Schizocladia ischiensis KU_0333)
AGCCTGTGGGACTTGTTTGTCTCCGGAAGGCTCAGTTTCCGGGGGTTCTA
TTCCTGAGCCTGTGGGACTTGTTTGTCTCCGGAAGGCTCAGTTTCCGGGG
GTTCTATTCCTGGTTTGTGCTCTTTGATGCCACGGGCGCCACCACGGCCC
AGGGGCAGCTGCCGTCCCCGGTACTCGCGACAGGCACCACGCCCGCCATC
GCCCAGACAGGCGTGGGCATGACGAGCGGGAATCGCGGCATGCAAGGGCC
AGTGCCGGTGCCGCAGCAATCGGCTCAGGGACTGCCGCCTCCTCCTCCTC
TTGTTTGTGCTCTTTGATGCCACGGGCGCCACCACGGCCCAGGGGCAGCT
GCCGTCCCCGGTACTCGCGACAGGCACCACGCCCGCCATCGCCCAGACAG
GCGTGGGCATGACGAGCGGGAATCGCGGCATGCAAGGGCCAGTGCCGGTG
CCGCAGCAATCGGCTCAGGGACTGCCGCCTCCTCCTCCTCTT
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