mRNA_S-ischiensis_contig10.1630.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1630.1
Unique NamemRNA_S-ischiensis_contig10.1630.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3273899..3275057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1159
Cds size711
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.1202352-UTR-S-ischiensis_contig10:3273898..32743461622815506.1202352-UTR-S-ischiensis_contig10:3273898..3274346Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3273899..3274346 +
1695739738.4521024-UTR-S-ischiensis_contig10:3273898..32743461695739738.4521024-UTR-S-ischiensis_contig10:3273898..3274346Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3273899..3274346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.135996-CDS-S-ischiensis_contig10:3274346..32750571622815506.135996-CDS-S-ischiensis_contig10:3274346..3275057Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3274347..3275057 +
1695739738.4618707-CDS-S-ischiensis_contig10:3274346..32750571695739738.4618707-CDS-S-ischiensis_contig10:3274346..3275057Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3274347..3275057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1630.1prot_S-ischiensis_contig10.1630.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3274347..3275057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1630.1

>prot_S-ischiensis_contig10.1630.1 ID=prot_S-ischiensis_contig10.1630.1|Name=mRNA_S-ischiensis_contig10.1630.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=237bp
MRSPQHLRQRAPSLPPSAPAMTNACQSWTPPNAPPWRGTATTSPASPAAV
TVPATRGAGGLRPAGRGRGRSGRRLTRLLHAQWPRHLCGGLPRCRTRGPH
TAPRPRALRGVHVMPGAALADLRRRRLRCAEQGLGRDVRWQRLAGRRDGG
QARVPLRGPLRWWQRRRRRQRRRRGLAEQDRPGWLLGGVRLHLRGVPRLP
GPAWDGHGLGQQCAGVLTVLRLQLPPRVRVRPDPGPQ
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mRNA from alignment at S-ischiensis_contig10:3273899..3275057+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1630.1 ID=mRNA_S-ischiensis_contig10.1630.1|Name=mRNA_S-ischiensis_contig10.1630.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1159bp|location=Sequence derived from alignment at S-ischiensis_contig10:3273899..3275057+ (Schizocladia ischiensis KU_0333)
GGGGGCAAGGGGGGAGCACCGCCACCGGCTTGTCGTTCAAAGTTCGTATG
GGGTGTGGTTGTTCGGTTGACCCATTCACCGAGCGGGGGCTGAAAACACG
ACAACTCTCAGTACACATGACAGCTCGTACTGCTGTATACGTGTCTCACC
ACCGTCAATCACCATGCTGGACATGGATGTCTCCAGAATGTCAACTGCCA
CCGGATTGTGCGCAACAACCCCATGCCCGTGCTCTTGGCGCCCCATGTTC
TGTGGATAAGGATTCCCATCCCGTGCACCCCCTCCATTGGCTGAGCAAGC
CGAGCCCGGCGCAGGCCCTGCGTACTGGGCGCACGTCTGCAGGGTTGAAT
CTTAGAAGTATGGCCCGCAAGGTGGTGTGCCTCCCCCCCACACCACAATT
CTAAGATTTGACCCTACAGACGTGCGCCCACCAGGGCTGGACCCCCGAAT
GCGATCACCGCAGCACCTGCGCCAGAGGGCCCCGTCTCTTCCACCCTCTG
CTCCTGCGATGACCAATGCCTGCCAGAGCTGGACCCCGCCGAACGCTCCG
CCCTGGAGGGGCACGGCAACAACGTCTCCTGCGTCGCCCGCTGCCGTGAC
CGTGCCGGCGACCCGTGGGGCAGGAGGGCTGCGGCCTGCCGGGCGCGGGC
GGGGTCGCAGCGGCAGAAGGCTGACGCGCCTGCTTCACGCCCAGTGGCCG
CGGCACCTATGCGGAGGCCTACCCCGGTGCCGAACCAGGGGCCCTCACAC
TGCGCCCCGGCCGCGGGCCCTACGCGGGGTGCACGTCATGCCTGGAGCAG
CTCTCGCTGACCTGCGGCGCAGACGCCTTCGGTGCGCAGAACAGGGCCTT
GGGCGCGACGTGCGGTGGCAGCGCCTTGCAGGTCGACGAGACGGTGGCCA
AGCACGCGTCCCACTACGTGGGCCTCTGCGGTGGTGGCAGCGGCGGCGGC
GGCGGCAGCGGAGGCGGCGAGGCTTGGCGGAACAAGATCGCCCGGGATGG
CTCCTCGGTGGAGTACGTCTACATCTCCGTGGAGTGCCGCGTCTCCCGGG
CCCGGCCTGGGATGGCCACGGACTTGGACAACAGTGCGCAGGAGTACTCA
CTGTCCTCAGGCTACAGCTGCCGCCCCGCGTCCGAGTCCGCCCCGATCCC
GGGCCACAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3273899..3275057+

>mRNA_S-ischiensis_contig10.1630.1 ID=mRNA_S-ischiensis_contig10.1630.1|Name=mRNA_S-ischiensis_contig10.1630.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1422bp|location=Sequence derived from alignment at S-ischiensis_contig10:3273899..3275057+ (Schizocladia ischiensis KU_0333)
ATGCGATCACCGCAGCACCTGCGCCAGAGGGCCCCGTCTCTTCCACCCTC
TGCTCCTGCGATGACCAATGCCTGCCAGAGCTGGACCCCGCCGAACGCTC
CGCCCTGGAGGGGCACGGCAACAACGTCTCCTGCGTCGCCCGCTGCCGTG
ACCGTGCCGGCGACCCGTGGGGCAGGAGGGCTGCGGCCTGCCGGGCGCGG
GCGGGGTCGCAGCGGCAGAAGGCTGACGCGCCTGCTTCACGCCCAGTGGC
CGCGGCACCTATGCGGAGGCCTACCCCGGTGCCGAACCAGGGGCCCTCAC
ACTGCGCCCCGGCCGCGGGCCCTACGCGGGGTGCACGTCATGCCTGGAGC
AGCTCTCGCTGACCTGCGGCGCAGACGCCTTCGGTGCGCAGAACAGGGCC
TTGGGCGCGACGTGCGGTGGCAGCGCCTTGCAGGTCGACGAGACGGTGGC
CAAGCACGCGTCCCACTACGTGGGCCTCTGCGGTGGTGGCAGCGGCGGCG
GCGGCGGCAGCGGAGGCGGCGAGGCTTGGCGGAACAAGATCGCCCGGGAT
GGCTCCTCGGTGGAGTACGTCTACATCTCCGTGGAGTGCCGCGTCTCCCG
GGCCCGGCCTGGGATGGCCACGGACTTGGACAACAGTGCGCAGGAGTACT
CACTGTCCTCAGGCTACAGCTGCCGCCCCGCGTCCGAGTCCGCCCCGATC
CCGGGCCACAGATGCGATCACCGCAGCACCTGCGCCAGAGGGCCCCGTCT
CTTCCACCCTCTGCTCCTGCGATGACCAATGCCTGCCAGAGCTGGACCCC
GCCGAACGCTCCGCCCTGGAGGGGCACGGCAACAACGTCTCCTGCGTCGC
CCGCTGCCGTGACCGTGCCGGCGACCCGTGGGGCAGGAGGGCTGCGGCCT
GCCGGGCGCGGGCGGGGTCGCAGCGGCAGAAGGCTGACGCGCCTGCTTCA
CGCCCAGTGGCCGCGGCACCTATGCGGAGGCCTACCCCGGTGCCGAACCA
GGGGCCCTCACACTGCGCCCCGGCCGCGGGCCCTACGCGGGGTGCACGTC
ATGCCTGGAGCAGCTCTCGCTGACCTGCGGCGCAGACGCCTTCGGTGCGC
AGAACAGGGCCTTGGGCGCGACGTGCGGTGGCAGCGCCTTGCAGGTCGAC
GAGACGGTGGCCAAGCACGCGTCCCACTACGTGGGCCTCTGCGGTGGTGG
CAGCGGCGGCGGCGGCGGCAGCGGAGGCGGCGAGGCTTGGCGGAACAAGA
TCGCCCGGGATGGCTCCTCGGTGGAGTACGTCTACATCTCCGTGGAGTGC
CGCGTCTCCCGGGCCCGGCCTGGGATGGCCACGGACTTGGACAACAGTGC
GCAGGAGTACTCACTGTCCTCAGGCTACAGCTGCCGCCCCGCGTCCGAGT
CCGCCCCGATCCCGGGCCACAG
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