mRNA_S-ischiensis_contig10.1625.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1625.1
Unique NamemRNA_S-ischiensis_contig10.1625.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3234796..3235484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size689
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1625.1prot_S-ischiensis_contig10.1625.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3234974..3235411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.773395-UTR-S-ischiensis_contig10:3234795..32349731622815505.773395-UTR-S-ischiensis_contig10:3234795..3234973Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3234796..3234973 +
1695739738.3962984-UTR-S-ischiensis_contig10:3234795..32349731695739738.3962984-UTR-S-ischiensis_contig10:3234795..3234973Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3234796..3234973 +
1622815505.7987003-UTR-S-ischiensis_contig10:3235411..32354841622815505.7987003-UTR-S-ischiensis_contig10:3235411..3235484Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3235412..3235484 +
1695739738.4153504-UTR-S-ischiensis_contig10:3235411..32354841695739738.4153504-UTR-S-ischiensis_contig10:3235411..3235484Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3235412..3235484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.7859325-CDS-S-ischiensis_contig10:3234973..32354111622815505.7859325-CDS-S-ischiensis_contig10:3234973..3235411Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3234974..3235411 +
1695739738.4066768-CDS-S-ischiensis_contig10:3234973..32354111695739738.4066768-CDS-S-ischiensis_contig10:3234973..3235411Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3234974..3235411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1625.1

>prot_S-ischiensis_contig10.1625.1 ID=prot_S-ischiensis_contig10.1625.1|Name=mRNA_S-ischiensis_contig10.1625.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=146bp
MGEIPGLRAYCTRKYLEVSCGPHVLYFEVQWSTWFEAPRPVDRVSVTKPD
SGWECGDGGCPCHTHTHTHTHVPGAGLPLQECAHATGPVQHKAAGQYTIL
QHCFEYVLYCAAVLETCTGQWQSVLLYDGYGYKCGTVGSTHCTLQ*
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mRNA from alignment at S-ischiensis_contig10:3234796..3235484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1625.1 ID=mRNA_S-ischiensis_contig10.1625.1|Name=mRNA_S-ischiensis_contig10.1625.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=689bp|location=Sequence derived from alignment at S-ischiensis_contig10:3234796..3235484+ (Schizocladia ischiensis KU_0333)
GTCCCAACTGAGATCAAAGATCGCCGGTCGGTCGACGCCCAGATGGCCTA
GGGCTGGCTGCTTATCTTGGCGACAAAGGGCCAGCTTCGTACGCGCTCTG
CTCTTGAGCAGAGGCCCCGTGACAGTGCGGAAGGGGAGGCAAGGAGCGAG
GAAACTTGCCGAGCGCGGTGGAGATTGAATGGGAGAAATCCCGGGGTTGA
GAGCCTATTGTACTCGGAAGTACTTGGAAGTAAGTTGTGGGCCGCATGTA
CTATACTTCGAAGTACAGTGGAGTACATGGTTTGAGGCCCCAAGGCCAGT
GGACCGAGTCAGCGTGACCAAGCCGGACTCAGGCTGGGAGTGCGGGGACG
GTGGATGTCCTTGTCACACACACACACACACACACACACACGTTCCTGGT
GCTGGCTTGCCTTTGCAGGAATGTGCACACGCCACGGGACCGGTGCAGCA
TAAGGCGGCGGGACAGTATACCATACTTCAGCACTGCTTCGAGTATGTAC
TGTACTGCGCAGCAGTGCTTGAAACATGCACAGGACAGTGGCAGAGCGTT
CTACTGTACGACGGTTACGGGTACAAGTGCGGCACTGTGGGTAGTACGCA
CTGTACACTACAGTAGAGAAAGTTACTGTACATTACAGTAGTCTCGTACT
TCCACAAGTGCCGCACTGTCCTGTGGACACTGCACAGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3234796..3235484+

>mRNA_S-ischiensis_contig10.1625.1 ID=mRNA_S-ischiensis_contig10.1625.1|Name=mRNA_S-ischiensis_contig10.1625.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=876bp|location=Sequence derived from alignment at S-ischiensis_contig10:3234796..3235484+ (Schizocladia ischiensis KU_0333)
ATGGGAGAAATCCCGGGGTTGAGAGCCTATTGTACTCGGAAGTACTTGGA
AGTAAGTTGTGGGCCGCATGTACTATACTTCGAAGTACAGTGGAGTACAT
GGTTTGAGGCCCCAAGGCCAGTGGACCGAGTCAGCGTGACCAAGCCGGAC
TCAGGCTGGGAGTGCGGGGACGGTGGATGTCCTTGTCACACACACACACA
CACACACACACACGTTCCTGGTGCTGGCTTGCCTTTGCAGGAATGTGCAC
ACGCCACGGGACCGGTGCAGCATAAGGCGGCGGGACAGTATACCATACTT
CAGCACTGCTTCGAGTATGTACTGTACTGCGCAGCAGTGCTTGAAACATG
CACAGGACAGTGGCAGAGCGTTCTACTGTACGACGGTTACGGGTACAAGT
GCGGCACTGTGGGTAGTACGCACTGTACACTACAGTAGATGGGAGAAATC
CCGGGGTTGAGAGCCTATTGTACTCGGAAGTACTTGGAAGTAAGTTGTGG
GCCGCATGTACTATACTTCGAAGTACAGTGGAGTACATGGTTTGAGGCCC
CAAGGCCAGTGGACCGAGTCAGCGTGACCAAGCCGGACTCAGGCTGGGAG
TGCGGGGACGGTGGATGTCCTTGTCACACACACACACACACACACACACA
CGTTCCTGGTGCTGGCTTGCCTTTGCAGGAATGTGCACACGCCACGGGAC
CGGTGCAGCATAAGGCGGCGGGACAGTATACCATACTTCAGCACTGCTTC
GAGTATGTACTGTACTGCGCAGCAGTGCTTGAAACATGCACAGGACAGTG
GCAGAGCGTTCTACTGTACGACGGTTACGGGTACAAGTGCGGCACTGTGG
GTAGTACGCACTGTACACTACAGTAG
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