mRNA_S-ischiensis_contig10.1629.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1629.1
Unique NamemRNA_S-ischiensis_contig10.1629.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:3270099..3273842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1031
Cds size762
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.521406-UTR-S-ischiensis_contig10:3270098..32701331622815500.521406-UTR-S-ischiensis_contig10:3270098..3270133Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3270099..3270133 +
1695739736.6922646-UTR-S-ischiensis_contig10:3270098..32701331695739736.6922646-UTR-S-ischiensis_contig10:3270098..3270133Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3270099..3270133 +
1622815500.606757-UTR-S-ischiensis_contig10:3273608..32738421622815500.606757-UTR-S-ischiensis_contig10:3273608..3273842Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3273609..3273842 +
1695739736.7758203-UTR-S-ischiensis_contig10:3273608..32738421695739736.7758203-UTR-S-ischiensis_contig10:3273608..3273842Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 3273609..3273842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.5330467-CDS-S-ischiensis_contig10:3270133..32701511622815500.5330467-CDS-S-ischiensis_contig10:3270133..3270151Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3270134..3270151 +
1695739736.7124186-CDS-S-ischiensis_contig10:3270133..32701511695739736.7124186-CDS-S-ischiensis_contig10:3270133..3270151Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3270134..3270151 +
1622815500.5454109-CDS-S-ischiensis_contig10:3270471..32705391622815500.5454109-CDS-S-ischiensis_contig10:3270471..3270539Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3270472..3270539 +
1695739736.7296455-CDS-S-ischiensis_contig10:3270471..32705391695739736.7296455-CDS-S-ischiensis_contig10:3270471..3270539Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3270472..3270539 +
1622815500.5652459-CDS-S-ischiensis_contig10:3270724..32711241622815500.5652459-CDS-S-ischiensis_contig10:3270724..3271124Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3270725..3271124 +
1695739736.739715-CDS-S-ischiensis_contig10:3270724..32711241695739736.739715-CDS-S-ischiensis_contig10:3270724..3271124Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3270725..3271124 +
1622815500.5768654-CDS-S-ischiensis_contig10:3271715..32717931622815500.5768654-CDS-S-ischiensis_contig10:3271715..3271793Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3271716..3271793 +
1695739736.7505634-CDS-S-ischiensis_contig10:3271715..32717931695739736.7505634-CDS-S-ischiensis_contig10:3271715..3271793Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3271716..3271793 +
1622815500.592596-CDS-S-ischiensis_contig10:3273410..32736081622815500.592596-CDS-S-ischiensis_contig10:3273410..3273608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3273411..3273608 +
1695739736.7618887-CDS-S-ischiensis_contig10:3273410..32736081695739736.7618887-CDS-S-ischiensis_contig10:3273410..3273608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 3273411..3273608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1629.1prot_S-ischiensis_contig10.1629.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 3270134..3273608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1629.1

>prot_S-ischiensis_contig10.1629.1 ID=prot_S-ischiensis_contig10.1629.1|Name=mRNA_S-ischiensis_contig10.1629.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=254bp
MDEVNLAGGPLGTDHPEGPPREAWGVQIRADPALLPLGAVYIPTRPAEEE
TEMGGARSNGNDTWEALPALEIRVTTLGDASSLEFSFLGWRVSSALALAV
AAATAFVVRSVAGWPLLLAPPVAVLLPAYLQGTGSAGEGRAGTAAGAAAK
TEAWGLTIFMTKVIVANFLGGSSLVWVTVVAALSTVLQVQPLAAKPPPGS
VAAASPPPPPPPPPHTPLAGAAPSRGVPASLQLEPLTPFTPILATAGGRL
PRA*
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mRNA from alignment at S-ischiensis_contig10:3270099..3273842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1629.1 ID=mRNA_S-ischiensis_contig10.1629.1|Name=mRNA_S-ischiensis_contig10.1629.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3744bp|location=Sequence derived from alignment at S-ischiensis_contig10:3270099..3273842+ (Schizocladia ischiensis KU_0333)
GGCTCAACACAGCCTTGGTTTTTGAACTCGGTGGTATGGACGAGGTGAAT
CTGGTGAGCAGAAGTAGCCCGGAGTATTTCCTTGTGGGCAGGGGGGGCAG
TGGAGGCTGCGGTGTTTTAAATGTATTGGGCGGTGCAAACGCCACAAGCT
CGTCCCAGCTTCGTAATTTATTAGGGACGCGTGGGTACACGGCTCAATGC
CGATAGCTACTCCTGACATTGTGCAAACCTGTAAAATATCGGGTTGTCGG
CCATCCACACAACCCCACGTTGGAAGACGAAGTTCATGAAAGCACATATA
TTGGGGTGTGCTGCCAAACCGTGTGCAAATAGACCAAGCTTGTCGTCTAA
GTCTTCTTCCCCTCGTCGACCAGGCCGGTGGACCGCTGGGAACAGATCAC
CCGGAGGGCCCTCCAAGGGAGGCATGGGGTGTTCAAATCAGGTCGGTCCA
CGTTGCTGGGGTCGCAATGCCCCCCACGCAACGCCCCCCACCCATGCCCC
GACAGGTGCCCAATCAACGAGCGGCTGCTCCCGCCCACGCCAGCCCGTCG
TGGCACGCTTGGTTGCAGTCACCGACCCTACTTATTCCTCGAAACTCTTG
CCCTGCCTTCCCGGCTTATCGCCCAGGGCTGACCCTGCACTGCTTCCTCT
AGGGGCGGTCTATATCCCCACCCGCCCGGCCGAGGAGGAGACCGAAATGG
GTGGAGCCAGGTCGAACGGCAATGACACGTGGGAGGCGCTCCCTGCGCTC
GAGATCCGGGTCACCACCCTCGGGGACGCCTCCTCATTGGAGTTTTCCTT
CCTGGGGTGGCGTGTGAGTTCCGCGCTGGCCTTGGCTGTCGCGGCTGCCA
CAGCCTTTGTGGTGCGGAGCGTGGCCGGGTGGCCGCTTCTTCTTGCCCCA
CCCGTGGCCGTACTATTGCCCGCTTACCTGCAGGGCACGGGCAGCGCAGG
GGAGGGTCGGGCGGGTACGGCAGCTGGTGCAGCGGCGAAGACGGAAGCGT
GGGGACTTACAATTTTCATGACAAAGGTGAGGCCCAAACTGAATGCGTAT
GCTGCGGCAGCCGCGGTGATGCCGCTGCTGCTGTATCTGCAGCCCGCTGG
TGCTTCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCCG
GTCCCTGCCATGCAACACGGCCCCTTTCTTGGCACGGGCTGTATTTTCGC
CAGGCCGCGCATAGCTCCCACGGCCCGCAGCGACTCAACGCGCCAAAATT
TCGCCGCGCCGCCCTCCCCGCGTGGTTGAGGGACTGCGTTGTTTTCGCGG
CGTACTTCAGGAAGTGGTTGCGCTCATTTATTAGTCGAGTGGTCCAGGAA
CGGGTTCATTACCCGAAGGTCGCGGTTTCAAAGCCCCCGGGGGGGGCGCA
ATTTTTCCGCAAAAATGGGCCTTTCACGAACATGGGCGCAAGAAAGGTAC
GACTACGGGTTGTACTGCCCTGCTCATGACAGCCAATCTTCCGGCTTGCT
CGCACGGTCAAGGGACGCACTTCAAAAGAGTGCCGCCCCCCCCCTCCCCA
TACGTTTGCCGCCGCCGCCACCGCCGCCGCTGCCGCTGCCACCGCCGCCG
CCGCCGCCGCGCGCCAGGTGATCGTCGCAAATTTCCTCGGGGGTTCTTCA
TTGGTGTGGGTGACTGTCGTGGCGGCCTTGTCGACGGTCCTGCAGGTATT
GTTCCCCTCTACTGTAGTGCTACTATGCTATACGTGCTGTACTGTGTATA
GTGCTTCTGCTGCTGCACGGCAAAGGAATCCTTTGGACTGCAGCGTATCA
CACTGCAACTGTTGCATATAGTGCTTCGAAGTACCCCACAGCATTTTGAA
GCACTTGAACACTGCTTGAAAGTACTCGGAAGCACAAAGTACTATTTCGA
AGTATATACACTGCAGCACACCGCTCTGTACTCGTACAAGTACGACTACA
TGTGGTACGCTTGCAACCCCCCCCCCCCCCGGTTTGGCCCACGGGGGCGG
CGCGTGTGTTTGGTGTGTACGCCCTGCAAGGGGTGGCCCTCCCACAACCG
GCGGATGCCCCAGCTGAGAACACAGGGTGACAGACGCCGTGACGGATGTC
GCCTGCCCACAAGAGGCCCACACTTGCACTCGCACTTTGAGCCCGCTTGT
CTTGGCTGTACTTCGAAGTACTTGCGTCCTGTCTGTCCTCAGGCCCGGGG
GCTGTGGCACGGTGACTTGTTTCGTCGATTCCTTCGTGTGCATCCCCACT
CCCGTAGTATCGCATGCGAATTGGCACGCCCAGTTGGGCCAAGCGGCTAC
CAGCATGGTTTTGGCGGCCGTTGCGATGCTGGCGCCAAGCGACGGGACCG
GCCGCTGCGGCCAACGGCTGCTTCAAACCGGTTTACGCGCGCCTCGGGAA
ACCTTGACTGTTTTTGCGCTGGTATTTGTTACAGCACGTACAGGCTCGCT
ATCAACGAGAGTACTTTCGCTTGCCCGACGACTGGTGGCATGCACGGGAC
GGGGCAGTATTAGTAGTAGCACTCCCTGTCCGGCATGAGCGCACACTTGC
CCGTTTCTGCCCACCTGCCGTGCTGCCTTTGAGTTCACGTGCTTTGAGGC
ACACAGTACTTGATTTTTACAGTACGTACTACGTACAGCAGTACTAAATA
CTCTACTGTACACCATGTGCAGTGATCTCCAGCGCCATGCAGCGCGTCAC
ATCCCTCCTTGCTTGGTACTTCCTGCATAGGAGCACCGCCGTAGGCGCTT
GGAACTACACGCCGTGCGCAGACATGCGAGTGGGATCCCGGCCAAACTCG
GCCAGGCCCCGACCCGTGACAGAGAGGCCGAGGCCAAGTCAACCCGGAGC
GCTTTGATGCTTGCAATGGGTGCTTGCTCGCGGCGGGCGTATCTTTAAAC
CCCTGGAGACGGCGGTAGGTGCACCACCACGTACAGTTCTCCACTACTTC
GTACTTCTTACTTACTGTACACTCCGGCGGATCTTCAGTGTGCTGTACCC
GGCGACCGGAGGCACGCACAGGAGGGGTAAGCTTAGCTTGCCTGTCCTGT
CCGACATGAGTGACCGTACACATGTACACTGTGCCGTCATTCTCCAAGGG
GCACGTACCGGTAGCTCCGCCCCGTCAGGCACCTACTCCAGCTATCCAGA
CGCTCCTCTGGGGCCTGCCTACAACAGTTGTACAGTACCAATTGCGCTTC
CAATTGGAGTAGAGGGCACCGCCGAAGCCTGGGCCGCTGGTCAATTCACC
CCCCCCCCCACCCATCCCGTGCCCCCTGCCTGCCACCGACCCCACTCATC
CGGTTCGAGCAGGTGCAGCCCTTGGCAGCCAAGCCTCCACCGGGGTCAGT
GGCAGCAGCGTCGCCACCACCACCACCGCCGCCACCTCCACACACGCCAC
TGGCCGGAGCGGCACCCTCCCGCGGGGTGCCTGCCTCCCTGCAATTGGAA
CCTTTGACTCCCTTCACCCCCATCTTGGCCACGGCGGGAGGGCGGTTGCC
CAGGGCATGACGAGAGCTTTCGCCGGCTGCCAGCACCCCCTCCTGCACCT
CGGCCAGCGGGGCTCACCGTGGCACAGCCCCCCTACAAATTTGTAGGGGG
GGGCAAGCGGGAGTGTTTGTGAGCGCTGGAAATGTTGACGAGACACCCTT
TCCGGCCGTGCATGCTCGGGAGGTGTTGGTTACAAGTGCAATGGCGTACT
GGTTCGGGGCAGGCTGCTGCAGCTATGTGTGTGTTGAGAGAGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:3270099..3273842+

>mRNA_S-ischiensis_contig10.1629.1 ID=mRNA_S-ischiensis_contig10.1629.1|Name=mRNA_S-ischiensis_contig10.1629.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1524bp|location=Sequence derived from alignment at S-ischiensis_contig10:3270099..3273842+ (Schizocladia ischiensis KU_0333)
ATGGACGAGGTGAATCTGATGGACGAGGTGAATCTGGCCGGTGGACCGCT
GGGAACAGATCACCCGGAGGGCCCTCCAAGGGAGGCATGGGGTGTTCAAA
TCAGGCCGGTGGACCGCTGGGAACAGATCACCCGGAGGGCCCTCCAAGGG
AGGCATGGGGTGTTCAAATCAGGGCTGACCCTGCACTGCTTCCTCTAGGG
GCGGTCTATATCCCCACCCGCCCGGCCGAGGAGGAGACCGAAATGGGTGG
AGCCAGGTCGAACGGCAATGACACGTGGGAGGCGCTCCCTGCGCTCGAGA
TCCGGGTCACCACCCTCGGGGACGCCTCCTCATTGGAGTTTTCCTTCCTG
GGGTGGCGTGTGAGTTCCGCGCTGGCCTTGGCTGTCGCGGCTGCCACAGC
CTTTGTGGTGCGGAGCGTGGCCGGGTGGCCGCTTCTTCTTGCCCCACCCG
TGGCCGTACTATTGCCCGCTTACCTGCAGGGCACGGGCAGCGCAGGGGAG
GGTCGGGCGGGTACGGCAGCTGGTGCAGCGGCGAAGACGGAAGCGTGGGG
ACTTACAATTTTCATGACAAAGGGCTGACCCTGCACTGCTTCCTCTAGGG
GCGGTCTATATCCCCACCCGCCCGGCCGAGGAGGAGACCGAAATGGGTGG
AGCCAGGTCGAACGGCAATGACACGTGGGAGGCGCTCCCTGCGCTCGAGA
TCCGGGTCACCACCCTCGGGGACGCCTCCTCATTGGAGTTTTCCTTCCTG
GGGTGGCGTGTGAGTTCCGCGCTGGCCTTGGCTGTCGCGGCTGCCACAGC
CTTTGTGGTGCGGAGCGTGGCCGGGTGGCCGCTTCTTCTTGCCCCACCCG
TGGCCGTACTATTGCCCGCTTACCTGCAGGGCACGGGCAGCGCAGGGGAG
GGTCGGGCGGGTACGGCAGCTGGTGCAGCGGCGAAGACGGAAGCGTGGGG
ACTTACAATTTTCATGACAAAGGTGATCGTCGCAAATTTCCTCGGGGGTT
CTTCATTGGTGTGGGTGACTGTCGTGGCGGCCTTGTCGACGGTCCTGCAG
GTGATCGTCGCAAATTTCCTCGGGGGTTCTTCATTGGTGTGGGTGACTGT
CGTGGCGGCCTTGTCGACGGTCCTGCAGGTGCAGCCCTTGGCAGCCAAGC
CTCCACCGGGGTCAGTGGCAGCAGCGTCGCCACCACCACCACCGCCGCCA
CCTCCACACACGCCACTGGCCGGAGCGGCACCCTCCCGCGGGGTGCCTGC
CTCCCTGCAATTGGAACCTTTGACTCCCTTCACCCCCATCTTGGCCACGG
CGGGAGGGCGGTTGCCCAGGGCATGAGTGCAGCCCTTGGCAGCCAAGCCT
CCACCGGGGTCAGTGGCAGCAGCGTCGCCACCACCACCACCGCCGCCACC
TCCACACACGCCACTGGCCGGAGCGGCACCCTCCCGCGGGGTGCCTGCCT
CCCTGCAATTGGAACCTTTGACTCCCTTCACCCCCATCTTGGCCACGGCG
GGAGGGCGGTTGCCCAGGGCATGA
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