mRNA_S-ischiensis_contig1.1213.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A6H5JU68_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU68_9PHAE) HSP 1 Score: 163 bits (413), Expect = 6.120e-42 Identity = 101/225 (44.89%), Postives = 125/225 (55.56%), Query Frame = 1
Query: 154 ALLQALLGRLGRHRLRFASALSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAAR------RRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPP-AALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQY 807
A L+ +L R R + L + R++L F+FDGR +AMRA GARL R R +Y++LG+ +LL+ EA A+ R L +S E G+ G P+ L G +G +A + P PA+ TP AL PPS RRCSLCMS REN AATPCGHLFCW C+VGWCQTNPECPLCRQPV PQSIVC+YQY
Sbjct: 225 AFLRRVLAWARRRRPAMSGVLEWALRLHLAAFYFDGRFANVAMRAVGARLAYARPEQEAARTRYAVLGLLLLLQAAAEAATASAETAERWRATARAALSESFPRSTEGEAVCGEGGG----------PSDL-GEGVGDTA------LPPRVPAATRGRTPADVALFPPSRRRCSLCMSSRENVAATPCGHLFCWECIVGWCQTNPECPLCRQPVAPQSIVCLYQY 432
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A836CLL0_9STRA (Peroxisome biogenesis factor 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL0_9STRA) HSP 1 Score: 140 bits (354), Expect = 4.450e-34 Identity = 86/202 (42.57%), Postives = 107/202 (52.97%), Query Frame = 1
Query: 205 ASALSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD 810
A L +L +L LFF +GR+ AMRAA RLM NR P +Y++LGV ML R E A R+L + D +G+ G + A+ RVP + G + A+ + RC+LCM PRE+TAAT CGHLFCW C+VGWC+TNPECPLCRQP EPQSIVCVY YD
Sbjct: 205 ARVLRWLGAFHLALFFLNGRYANAAMRAARVRLMYNRAQDA-PLPRYTILGVLMLARFGFEFGAQAARKLHGIIFSDG-------DGSGGXXXXXKANLASQRVPGLS----------------GSDTEAAARRH------------RCALCMGPREHTAATLCGHLFCWECIVGWCETNPECPLCRQPAEPQSIVCVYHYD 370
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: W4GFD0_9STRA (RING-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFD0_9STRA) HSP 1 Score: 108 bits (271), Expect = 2.390e-23 Identity = 73/205 (35.61%), Postives = 104/205 (50.73%), Query Frame = 1
Query: 208 SALSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPR-AQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSA----RRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQY 807
+A+S L ++++ LFF G + L+ R AG R +L+ P+ AQ+S+LG +L+R A + A LP + G R A + RVP + P +P PP LP S+ ++C+LC++ R + +ATPCGHLFCW C+VGWCQ+ PECPLCRQ V PQ I C+Y Y
Sbjct: 101 AAVSGLLQLHVALFFLRGTYLHLSKRMAGIRYILSYRPSPNTSFAQFSILGYMILIR----AALTASFTLPTIV-----------RAVMGTRLAPPSAASTHRVPCLAV----------------PITP------NPPPRQLPSSSPQRIKKCALCLAERSHPSATPCGHLFCWDCIVGWCQSKPECPLCRQLVLPQDIKCLYNY 268
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A3R6XHB0_9STRA (RING-type domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XHB0_9STRA) HSP 1 Score: 110 bits (275), Expect = 2.450e-23 Identity = 74/205 (36.10%), Postives = 105/205 (51.22%), Query Frame = 1
Query: 208 SALSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPR-AQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSA----RRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQY 807
+A+S L ++++ LFF G + L+ R AG R +L+ P+ AQ+S+LG +L+R A + A LP + G R A + RVP LP P+ + PP LP S+ ++C+LC++ R + +ATPCGHLFCW C+VGWCQ+ PECPLCRQ V PQ I C+Y Y
Sbjct: 170 AAMSGLLQLHVALFFLRGTYLHLSKRMAGIRYILSYRPSPNTSFAQFSILGYMILIR----AALTASFTLPTIV-----------RAVMGTRLAPPSAASTHRVP-CLPVPTTPK---------------------PPPRQLPSSSPQRIKKCALCLAERNHPSATPCGHLFCWDCIVGWCQSKPECPLCRQLVLPQDIKCLYNY 337
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A2I0VIK7_9ASPA (Peroxisome biogenesis factor 10 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VIK7_9ASPA) HSP 1 Score: 108 bits (271), Expect = 4.950e-23 Identity = 60/194 (30.93%), Postives = 100/194 (51.55%), Query Frame = 1
Query: 229 RVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD 810
R NLM F+F+G ++ ++ RAAG R + P+ + R +Y +LG+F+L+++ + A RR + + H G ++ +P + ++ A +G S + T + +P S +C+LC+S R++ AT CGH+FCW C++ WC PECPLCR P+ S+VC+Y D
Sbjct: 130 RANLMFFYFEGLYYHISKRAAGIRYVFIGKPSNQ-RLRYQILGIFLLVQLCILAAEGLRRSNFSSIA----------SSVHPSSLGGHQSSTGRGLPVLNEDGNLITDAAIKKSSLG-----SDSLTT--ESQVPVSISKCTLCLSTRQHPTATTCGHVFCWNCIMEWCNEKPECPLCRTPITHSSLVCIYHSD 305
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A6P4A8F7_ZIZJJ (peroxisome biogenesis factor 10 n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4A8F7_ZIZJJ) HSP 1 Score: 110 bits (275), Expect = 5.730e-23 Identity = 66/200 (33.00%), Postives = 100/200 (50.00%), Query Frame = 1
Query: 214 LSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILP-GPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD 810
L + R NLM F+F+G ++ ++ RAAG R + P+ + R +Y +LGVF+L+++ + AV RR + + AH G + A +P + G I S SS + T +C+LC+S R++ ATPCGH+FCW C++ WC PECPLCR P+ S+VC+Y D
Sbjct: 215 LQLVLRANLMFFYFEGLYYHISKRAAGIRYVFIGKPSNQ-RPRYQILGVFLLVQLCIIAVEGLRRSNLSSIA----------SSAHHTSSGMHHSSAERGLPVLNEEGNLISVSTDKRSWMYDSSSTSESQATT--------GMSKCTLCLSDRQHPTATPCGHVFCWSCIMEWCNEKPECPLCRTPITHSSLVCLYHSD 395
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A067GGG7_CITSI (RING-type domain-containing protein n=7 Tax=Citrus TaxID=2706 RepID=A0A067GGG7_CITSI) HSP 1 Score: 110 bits (274), Expect = 5.900e-23 Identity = 63/199 (31.66%), Postives = 99/199 (49.75%), Query Frame = 1
Query: 214 LSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD 810
L + R NLM F+F+G ++ ++ R AG R + P + R +Y +LGVF+L+++ + A RR + + H G ++A +P + S+ S V S+ S P + +C+LC+S R++ ATPCGH+FCW C++ WC PECPLCR P+ S+VC+Y D
Sbjct: 194 LQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPTNQ-RPRYQILGVFLLIQLCIIAAEGLRRSNLSSIA----------SSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGWVLDSTSTSESQAAPGVS-------KCTLCLSNRQDPTATPCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYHSD 374
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: T0Q7Z6_SAPDV (RING-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q7Z6_SAPDV) HSP 1 Score: 109 bits (273), Expect = 6.110e-23 Identity = 64/192 (33.33%), Postives = 90/192 (46.88%), Query Frame = 1
Query: 232 VNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQY 807
V+L LF+ GR+ +A R AG R +L R P AQ+S+LG +LLR+ + +V+ L L + Q RVP+ P++ R+C+LC++ R + A TPCGH+FCW C+VGWCQ PECPLCRQ V+PQ + C+Y Y
Sbjct: 211 VHLALFYLHGRYFDMAKRVAGIRYILTRK-LDAPHAQFSILGYLILLRLALSSVLGLSACLRTLLGVEVAPRRLDQH----------------RVPSDESRPTVTAQ------------------------------RKCALCLTERSHPAMTPCGHVFCWECIVGWCQNKPECPLCRQLVQPQDVKCIYSY 355
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A6I9TKZ1_SESIN (peroxisome biogenesis factor 10 isoform X1 n=2 Tax=Lamiales TaxID=4143 RepID=A0A6I9TKZ1_SESIN) HSP 1 Score: 110 bits (274), Expect = 8.010e-23 Identity = 67/194 (34.54%), Postives = 100/194 (51.55%), Query Frame = 1
Query: 229 RVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD 810
R NLM F+F+G ++ L+ RAAG R + P + R +Y +LGVF+L+++ + A RR + L S Q+ +HG + S A +P + ++ V S+P S + +C+LC+S R+N ATPCGH+FCW C++ WC PECPLCR P S+VC+Y D
Sbjct: 223 RANLMFFYFEGLYYHLSKRAAGIRYVFIGKPTNQ-RPRYQILGVFLLVQLCIIAAEGLRR---SNL---STFATSFQQTSHGAYQTS----AGRGLPVLNEEGNLITEDSGKSSWVHESTPTSESQAS--------GVSKCTLCLSNRQNPTATPCGHVFCWNCIMEWCNEKPECPLCRSPATHSSLVCLYHSD 397
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Match: A0A5N6RP28_9ROSI (RING-type domain-containing protein n=2 Tax=Betulaceae TaxID=3514 RepID=A0A5N6RP28_9ROSI) HSP 1 Score: 110 bits (274), Expect = 8.220e-23 Identity = 62/199 (31.16%), Postives = 101/199 (50.75%), Query Frame = 1
Query: 214 LSYLQRVNLMLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAVMAARRRLPAGLLRDSXXXXXXQEGAHGQRRGSEEAEAAARVPAILPGPSIGQSAGXXXXXVGPSSPASGDMYTPPAALLPPSARRCSLCMSPRENTAATPCGHLFCWYCVVGWCQTNPECPLCRQPVEPQSIVCVYQYD 810
L + R NLMLF+F+G ++ ++ RAAG + P+ + R +Y +LGVF+L+++ V A RR + + H G+ + A +P + ++ + GP S ++ + +C+LC+S R++ ATPCGH+FCW C++ WC PECPLCR P+ S+VC+Y D
Sbjct: 221 LQLVLRANLMLFYFEGLYYHISKRAAGIHYVFIGKPSNQ-RPRYQILGVFLLIQLCVIAAEGLRRSNLSSIA----------SSVHQTSFGTHSSSAGRGLPVLNEEGNLISADNSNKGSWGPDSSSTSESQV---------TSKCTLCLSNRQHPTATPCGHVFCWNCIMEWCNEKPECPLCRTPMTHSSLVCLYHSD 399 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.1213.1 >prot_S-ischiensis_contig1.1213.1 ID=prot_S-ischiensis_contig1.1213.1|Name=mRNA_S-ischiensis_contig1.1213.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=191bp MLFFFDGRHHTLAMRAAGARLMLNRTPAGEPRAQYSLLGVFMLLRVVVEAback to top mRNA from alignment at S-ischiensis_contig1:8243585..8246412+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.1213.1 ID=mRNA_S-ischiensis_contig1.1213.1|Name=mRNA_S-ischiensis_contig1.1213.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2828bp|location=Sequence derived from alignment at S-ischiensis_contig1:8243585..8246412+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:8243585..8246412+ >mRNA_S-ischiensis_contig1.1213.1 ID=mRNA_S-ischiensis_contig1.1213.1|Name=mRNA_S-ischiensis_contig1.1213.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1146bp|location=Sequence derived from alignment at S-ischiensis_contig1:8243585..8246412+ (Schizocladia ischiensis KU_0333)back to top |