mRNA_S-ischiensis_contig1.1171.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1171.1
Unique NamemRNA_S-ischiensis_contig1.1171.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig1.1171.1 vs. uniprot
Match: D8LQ61_ECTSI (Methyltransf_25 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ61_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.860e-31
Identity = 65/119 (54.62%), Postives = 88/119 (73.95%), Query Frame = 3
Query:  114 ALLQHARDTFARQTTSTPIVAPISPSPQALIARVLEVLPLTDKDFVVDLGCGDGRWLVAAAQAAGCPCRGYDLNNALLSRARAAAQAAQLSALVSVEECDIFTASLSSATLVIVYLFRQ 470
            AL+++A++TF   T  T +VAPISPSP++LI  VL+ L L   D VVDLGCGDGRWL+AAA+  GC  RG DLN  LL + R AA  A++S+LV +++ DIF A L+ +T++IVYLFR+
Sbjct:    9 ALVKYAKETFVEHTRETSLVAPISPSPESLIETVLDGLRLEPHDIVVDLGCGDGRWLLAAARR-GCAGRGLDLNEDLLRKGRLAAAEARVSSLVELDKEDIFVAPLAGSTVIIVYLFRE 126          
BLAST of mRNA_S-ischiensis_contig1.1171.1 vs. uniprot
Match: A0A7S1TVS2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVS2_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.620e-23
Identity = 54/122 (44.26%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  105 FKRALLQHARDTFARQTTSTPIVAPISPSPQALIARVLEVLPLTDKDFVVDLGCGDGRWLVAAAQAAGCPCRGYDLNNALLSRARAAAQAAQLSALVSVEECDIFTASLSSATLVIVYLFRQ 470
             + A++Q +++ FA +  +T IVAPISP+P  ++  VL+ + +   D V+DLGCGDGRWLVAAA+A GC C GY+L +  +++   A  AA + ALV V   DIF   LS A++++ YLF  
Sbjct:   10 LRAAIIQASKEAFAARE-NTIIVAPISPTPLPIVQAVLDKVSVNADDVVLDLGCGDGRWLVAAAEAYGCRCVGYELEDERIAKCGEAIAAAGVGALVEVRRQDIFEVDLSEASVLVFYLFSD 130          
BLAST of mRNA_S-ischiensis_contig1.1171.1 vs. uniprot
Match: A0A8K1FDL0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDL0_PYTOL)

HSP 1 Score: 87.4 bits (215), Expect = 1.630e-18
Identity = 54/129 (41.86%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  111 RALLQHARDTFARQTTST----PIVAPISPSPQALIARVLEVL-----PLTDKDFVVDLGCGDGRWLVAAAQAAGCPCRGYDLNNALLSRARAAAQAAQLSALVSVEECDIFTASLSSATLVIVYLFRQ 470
            RALL HA    A    +     P+ AP SPSP A+I  V   L     PLT  D +VDLGCGDGRWL++  Q   C   G +L+ AL+ RA+     A+L+ L+ V + DI    +++AT VIVY F +
Sbjct:   18 RALLLHAAKARAPDVLALSKEKPLFAPYSPSPDAIIHAVWAFLETQQRPLTSADRLVDLGCGDGRWLISGVQRYNCSALGIELDPALVERAKQNVHLAELAHLIDVIQADIMATDITNATFVIVYAFAE 146          
BLAST of mRNA_S-ischiensis_contig1.1171.1 vs. uniprot
Match: A0A662XNJ5_9STRA (Methyltransf_25 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNJ5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 9.730e-18
Identity = 50/116 (43.10%), Postives = 69/116 (59.48%), Query Frame = 3
Query:  138 TFARQTTSTPIVAPISPSPQALIARVLEVLP-----LTDKDFVVDLGCGDGRWLVAAAQAAGCPCRGYDLNNALLSRARAAAQAAQLSALVSVEECDIFTASLSSATLVIVYLFRQ 470
            T   +  +TP+ AP SPSP A+I  V   L      LT +D +VDLGCGDGRWLV+  Q   C   G +L+ AL++R +AA +A  L   + V++ D+  A +S A LVIVY F +
Sbjct:   41 TLKAEDATTPLFAPFSPSPLAVIDAVWTRLEEAQMALTPEDLLVDLGCGDGRWLVSGVQRFKCSALGVELDAALVARTQAAVRAQGLEHKIQVQQGDVMLADVSRARLVIVYAFAE 156          
BLAST of mRNA_S-ischiensis_contig1.1171.1 vs. uniprot
Match: A0A7S1XND7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XND7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.080e-17
Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  105 FKRALLQHARDTFARQTTSTPIVAPISPSPQALIARVLEVLPLTDKDFVVDLGCGDGRWLVAAAQAAGCPCRGYDLNNALLSRARAAAQAAQLSALV 395
             + A++Q +++ FA +  +T IVAPISP+P  ++  VL+ + +   D V+DLGCGDGRWLVAAA+A GC C GY+L +  +++   A  AA + ALV
Sbjct:   10 LRAAIIQASKEAFAARE-NTIIVAPISPTPLPIVQAVLDKVSVNADDVVLDLGCGDGRWLVAAAEAYGCRCVGYELEDERIAKCGEAIAAAGVGALV 105          
BLAST of mRNA_S-ischiensis_contig1.1171.1 vs. uniprot
Match: A0A7S1Z4D0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z4D0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.310e-16
Identity = 47/143 (32.87%), Postives = 84/143 (58.74%), Query Frame = 3
Query:  102 RFKRALLQHARDTFARQ----------------TTSTPIVAPISPSPQALIARVLEVLPLTDKDFVVDLGCGDGRWLVAAAQAAGCPCRGYDLNNALLSRARAAAQAAQLSALVSVEECDIF----TASLSSATLVIVYLFRQ 470
            R + AL+  A++ F +Q                ++   +VAPISP+P+++I  ++ +L L+ K  ++DLGCGDGRW+++AA    C C G D+++  L+ AR A +   L   V +++ D+F    +++LS A ++++YLFR 
Sbjct:   21 RIREALIAMAQNRFEQQQKXXXXXXXXESTNSSSSCVKLVAPISPTPKSVITSIISMLNLSSKSLLLDLGCGDGRWVISAAVECKCRCIGCDVDDERLALARQAVKDHGLECKVDIQKKDVFEVAKSSALSDADVIVMYLFRD 163          
BLAST of mRNA_S-ischiensis_contig1.1171.1 vs. uniprot
Match: H3H806_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H806_PHYRM)

HSP 1 Score: 79.7 bits (195), Expect = 9.070e-16
Identity = 49/120 (40.83%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  126 HARDTFARQTTSTPIVAPISPSPQALIARVLEVLP-----LTDKDFVVDLGCGDGRWLVAAAQAAGCPCRGYDLNNALLSRARAAAQAAQLSALVSVEECDIFTASLSSATLVIVYLFRQ 470
            HA  T   +  ++ + AP SPSP A+I  V   L      LT  D +VDLGCGDGRWLV+  Q  GC   G +L+  L+ RAR       L   + V++ D+  A +S A LVIVY F +
Sbjct:   21 HAALTLQGEQGNSELFAPFSPSPVAVIDAVWRKLEEKQVQLTPGDLLVDLGCGDGRWLVSGVQRFGCNAFGVELDENLVKRARDQVTQQNLQLQIRVDQGDVMLADISDAKLVIVYAFAE 140          
BLAST of mRNA_S-ischiensis_contig1.1171.1 vs. uniprot
Match: A0A517Y2A7_9BACT (Methyltransferase domain protein n=1 Tax=Urbifossiella limnaea TaxID=2528023 RepID=A0A517Y2A7_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 1.680e-15
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  183 SPSPQALIARVLEVLPLTDKDFVVDLGCGDGRWLVAAAQAAGCPCRGYDLNNALLSRARAAAQAAQLSALVSVEECDIFTASLSSATLVIVYL 461
            +P+P+ ++ ++LE+  +T  D V DLGCGDGR LVAAA   GC   GY+L+   + +ARAA +AA +  LV V E D+ TA L+  T+V +Y+
Sbjct:   31 APTPRDVVTKMLELAAVTRDDVVADLGCGDGRILVAAANRYGCKAVGYELDPEYVKKARAAVEAAGVGKLVRVVEADLLTADLTGVTVVTLYV 123          
BLAST of mRNA_S-ischiensis_contig1.1171.1 vs. uniprot
Match: A0A7S2W501_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W501_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.930e-15
Identity = 65/161 (40.37%), Postives = 84/161 (52.17%), Query Frame = 3
Query:   54 GVAARPAATSGHMPPLRFKRALLQHARDTFARQ------------TTSTPIVAPISPSPQALIARVLEVLP-------LTDKDFVVDLGCGDGRWLVAAAQA-AGCPCRGYDLNNALLSRARAAAQAAQLSAL----VSVEECDIFTASLSSATLVIVYLF 464
            G+AA  AA       LR ++ALL+ A   F+ Q              ++P++APISPSP+AL+   L  +        L     VVDLGCGDGRWL A  +A     C GYDLN  LL+RA    QA     +    V   + ++ TA LSSA+LVIVYLF
Sbjct:    2 GMAAATAAAGAK---LRLRKALLEEAARRFSEQQEESLRGGDGSGAEASPLLAPISPSPEALVDEALRRVAADPASALLGAGGTVVDLGCGDGRWLFACLEAFPEARCVGYDLNLELLARASQRKQALISGGMDPERVIFHQQNLLTADLSSASLVIVYLF 159          
BLAST of mRNA_S-ischiensis_contig1.1171.1 vs. uniprot
Match: A0A6A3XID4_9STRA (Methyltransf_25 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XID4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.830e-15
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = 3
Query:  138 TFARQTTSTPIVAPISPSPQALIARV---LE--VLPLTDKDFVVDLGCGDGRWLVAAAQAAGCPCRGYDLNNALLSRARAAAQAAQLSALVSVEECDIFTASLSSATLVIVYLFRQ 470
            T   + +   + AP SPSP A+I  V   LE   L LT +D +VDLGCGDGRWLV+  +   C   G +L+  L+ RAR   Q  QL   + V+  D+  A +S A LVIVY F +
Sbjct:   31 TLKSEDSEQELFAPFSPSPVAVIDAVWTKLEDAQLALTSEDLLVDLGCGDGRWLVSGVKRFDCKALGVELDETLVHRARTQVQEQQLQHKIQVQLGDVMLADISQAKLVIVYAFAE 146          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ61_ECTSI1.860e-3154.62Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A7S1TVS2_9STRA1.620e-2344.26Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8K1FDL0_PYTOL1.630e-1841.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XNJ5_9STRA9.730e-1843.10Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A7S1XND7_9STRA1.080e-1745.36Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1Z4D0_9STRA1.310e-1632.87Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
H3H806_PHYRM9.070e-1640.83Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A517Y2A7_9BACT1.680e-1545.16Methyltransferase domain protein n=1 Tax=Urbifossi... [more]
A0A7S2W501_9STRA1.930e-1540.37Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A3XID4_9STRA2.830e-1542.24Methyltransf_25 domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7916999..7917958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog2880.D8LQ61
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2CYTN@1,2S6D0@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-26_006020.1
Exons3
Model size471
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1171.1prot_S-ischiensis_contig1.1171.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7917088..7917958 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.0877488-UTR-S-ischiensis_contig1:7916998..79170871622815488.0877488-UTR-S-ischiensis_contig1:7916998..7917087Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7916999..7917087 +
1695739730.245399-UTR-S-ischiensis_contig1:7916998..79170871695739730.245399-UTR-S-ischiensis_contig1:7916998..7917087Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7916999..7917087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.1012118-CDS-S-ischiensis_contig1:7917087..79172091622815488.1012118-CDS-S-ischiensis_contig1:7917087..7917209Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7917088..7917209 +
1695739730.2552845-CDS-S-ischiensis_contig1:7917087..79172091695739730.2552845-CDS-S-ischiensis_contig1:7917087..7917209Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7917088..7917209 +
1622815488.1235864-CDS-S-ischiensis_contig1:7917364..79175331622815488.1235864-CDS-S-ischiensis_contig1:7917364..7917533Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7917365..7917533 +
1695739730.274952-CDS-S-ischiensis_contig1:7917364..79175331695739730.274952-CDS-S-ischiensis_contig1:7917364..7917533Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7917365..7917533 +
1622815488.1409621-CDS-S-ischiensis_contig1:7917868..79179581622815488.1409621-CDS-S-ischiensis_contig1:7917868..7917958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7917869..7917958 +
1695739730.2856975-CDS-S-ischiensis_contig1:7917868..79179581695739730.2856975-CDS-S-ischiensis_contig1:7917868..7917958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7917869..7917958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1171.1

>prot_S-ischiensis_contig1.1171.1 ID=prot_S-ischiensis_contig1.1171.1|Name=mRNA_S-ischiensis_contig1.1171.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
MPPLRFKRALLQHARDTFARQTTSTPIVAPISPSPQALIARVLEVLPLTD
KDFVVDLGCGDGRWLVAAAQAAGCPCRGYDLNNALLSRARAAAQAAQLSA
LVSVEECDIFTASLSSATLVIVYLFRQ
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mRNA from alignment at S-ischiensis_contig1:7916999..7917958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1171.1 ID=mRNA_S-ischiensis_contig1.1171.1|Name=mRNA_S-ischiensis_contig1.1171.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=960bp|location=Sequence derived from alignment at S-ischiensis_contig1:7916999..7917958+ (Schizocladia ischiensis KU_0333)
CACGGGCGGGGGCGGGCCGCACCAAGCAGCAACCCTGACAGCACCCCGCG CGGGGTGTGGCAGCCCGCCCAGCGGCGACCAGCGGGCACATGCCGCCGCT GAGGTTCAAGAGGGCTCTTCTGCAGCATGCGCGAGACACATTTGCGCGAC AAACCACCAGTACGCCAATTGTTGCTCCAATCTCCCCCTCGCCGCAGGCT TTGATTGCAAGGTACGCGTGTGCCGGCATCAGCACCGATCGCTGCACGGC TGGTCCAGCTTTGCACCCCGCACACCCCGCCGACGACCTGGGGTAGTGTT GAAAACGCTCCCGTTGACGGACAAGGGTTTCTTCTGATCGCGTGGTCTGC CGACGCGCCGGGCCAGGGTGTTGGAAGTGCTCCCGTTGACGGACAAGGAC TTCGTCGTCGACCTGGGGTGTGGAGACGGGCGGTGGCTTGTGGCTGCTGC TCAAGCCGCCGGGTGCCCCTGCCGGGGTTATGATCTGAACAATGCACTCC TCAGCCGGGCGAGAGCGGCAGCACAGGCAGCACAGGTACCTGCCTGCTGT GCTGGTGGTGGTAGAACGTGCTATCGCCCACCAGCTCTGTCCAGACACGT GCATCCCATCTCTCTGCTAGTAATTTCCGCCTCTTTCCATTCTCTACCTG TCTCCCTCCCCCCTCCCTCTTCCTCTCCCGCTGTGTCTTTTGAACAGTGT GAAGTTCTGCACTTCCTGGCCATGCACGACGTGCAGTATCCTTCGAAGGT ACATAGCACTTACACTGACTTACCATGGGGGTGCTGTAGTACTTGGGTAG CAGTATGTCGTGCACACACCACTCTTGCCGCTGACCCCTGCCCATTTTTC CTGCTACGCCCCCGCTCCAGCTTTCCGCACTGGTGTCCGTGGAGGAATGC GACATTTTCACCGCGTCCCTGTCGTCGGCGACGCTGGTCATCGTCTACCT GTTTCGCCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7916999..7917958+

>mRNA_S-ischiensis_contig1.1171.1 ID=mRNA_S-ischiensis_contig1.1171.1|Name=mRNA_S-ischiensis_contig1.1171.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig1:7916999..7917958+ (Schizocladia ischiensis KU_0333)
ATGCCGCCGCTGAGGTTCAAGAGGGCTCTTCTGCAGCATGCGCGAGACAC
ATTTGCGCGACAAACCACCAGTACGCCAATTGTTGCTCCAATCTCCCCCT
CGCCGCAGGCTTTGATTGCAAGATGCCGCCGCTGAGGTTCAAGAGGGCTC
TTCTGCAGCATGCGCGAGACACATTTGCGCGACAAACCACCAGTACGCCA
ATTGTTGCTCCAATCTCCCCCTCGCCGCAGGCTTTGATTGCAAGGGTGTT
GGAAGTGCTCCCGTTGACGGACAAGGACTTCGTCGTCGACCTGGGGTGTG
GAGACGGGCGGTGGCTTGTGGCTGCTGCTCAAGCCGCCGGGTGCCCCTGC
CGGGGTTATGATCTGAACAATGCACTCCTCAGCCGGGCGAGAGCGGCAGC
ACAGGCAGCACAGGGTGTTGGAAGTGCTCCCGTTGACGGACAAGGACTTC
GTCGTCGACCTGGGGTGTGGAGACGGGCGGTGGCTTGTGGCTGCTGCTCA
AGCCGCCGGGTGCCCCTGCCGGGGTTATGATCTGAACAATGCACTCCTCA
GCCGGGCGAGAGCGGCAGCACAGGCAGCACAGCTTTCCGCACTGGTGTCC
GTGGAGGAATGCGACATTTTCACCGCGTCCCTGTCGTCGGCGACGCTGGT
CATCGTCTACCTGTTTCGCCAGCTTTCCGCACTGGTGTCCGTGGAGGAAT
GCGACATTTTCACCGCGTCCCTGTCGTCGGCGACGCTGGTCATCGTCTAC
CTGTTTCGCCAG
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