prot_S-ischiensis_contig1.1162.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-ischiensis_contig1.1162.1
Unique Name	prot_S-ischiensis_contig1.1162.1
Type	polypeptide
Organism	Schizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length	133

Homology

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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A835YSJ1_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ1_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.180e-55
Identity = 104/129 (80.62%), Postives = 112/129 (86.82%), Query Frame = 0

Query:    2 RPPRGRGDRGGRFSRGGRSPGXXXXXXXXXXXGYDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTG 130
            RPPRGRG   G   RG     XXXXXXXXXXX YDEGPP+EVVELG FVHA EGEM+YK+T+SMVPYFNAGAYLENKTKIGKVDEILGPIN + FTVKPD GVNATSF+DGDKV+IGP+KLLPMSRFTG
Sbjct:    3 RPPRGRG---GFRGRGXXXXXXXXXXXXXXXXXYDEGPPSEVVELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128

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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A6H5KV55_9PHAE (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 8.830e-50
Identity = 72/98 (73.47%), Postives = 90/98 (91.84%), Query Frame = 0

Query:   35 YDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEG 132
            YD+GPP E+VELG F+H  E EM+YK+T+SMVPYFNAGAYL+NKTK+GKVDEILGP+N  +FTVKPD+GVNA+SF++GDK++IG +KLLP+SRFTGEG
Sbjct:   28 YDDGPPDEIVELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNGDKIFIGTQKLLPVSRFTGEG 125

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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A7S3USE8_HETAK (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK)

HSP 1 Score: 163 bits (412), Expect = 1.250e-49
Identity = 76/99 (76.77%), Postives = 86/99 (86.87%), Query Frame = 0

Query:   34 GYDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEG 132
            GYDEGPP  VVELG F+H  EGEM+YK+T+ MVPYFNAGAYLENKTKIGKVDEI GP+N  +FTVKPD+GV ATSF+ GDKV+IG +KLLPMSRFTG G
Sbjct:   12 GYDEGPPEYVVELGDFMHPCEGEMVYKLTNEMVPYFNAGAYLENKTKIGKVDEIFGPVNEIMFTVKPDTGVIATSFKKGDKVWIGTDKLLPMSRFTGGG 110

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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A7S2UZ93_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ93_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.480e-47
Identity = 72/99 (72.73%), Postives = 87/99 (87.88%), Query Frame = 0

Query:   34 GYDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEG 132
            GY+EGPP EVVELGSF+H  EGEM+YK+ H+MVPYFNAGA+L++KTK+GKVDEI GPIN  +FTVKPD+GV+A SF+  DKV++  EKLLPMSRFTGEG
Sbjct:   38 GYEEGPPDEVVELGSFMHPCEGEMVYKLVHTMVPYFNAGAFLQDKTKLGKVDEIFGPINNIMFTVKPDAGVSAASFKAEDKVFVSTEKLLPMSRFTGEG 136

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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: T0QNK0_SAPDV (H/ACA ribonucleoprotein complex subunit n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QNK0_SAPDV)

HSP 1 Score: 157 bits (398), Expect = 2.680e-46
Identity = 74/99 (74.75%), Postives = 84/99 (84.85%), Query Frame = 0

Query:   34 GYDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEG 132
            GYDEGPPA VVELG F+HA E EM+YK T+  VPYFNAG YLENKTKIGKVDEILG IN  +FTVKPD+GV+A SF+ GDKVYI P+KLLP+SRFT +G
Sbjct:   38 GYDEGPPATVVELGIFIHACEDEMVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFTDQG 136

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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A6A4XZY0_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZY0_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.380e-44
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 0

Query:   35 YDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEG 132
            ++EGPPA VVELG+F+HA E EM+YK T   VPYFNAG YLENKTKIGK+DEILG IN  +FTVKPDSGV A SF+ GDKVYI P+KLLP+SRFT +G
Sbjct:   40 FEEGPPATVVELGTFMHACEDEMVYKSTSDKVPYFNAGVYLENKTKIGKLDEILGAINDVMFTVKPDSGVAAKSFKSGDKVYISPDKLLPLSRFTDQG 137

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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A3M6VHN5_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHN5_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.540e-44
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 0

Query:   37 EGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFT 129
            EGPPA V+ELGSFVHA E EM+YK T+  VPYFNAGA+LENKT+IGKVDEILG IN  +FTVKPD+GV+ATSFQ GDKV+I P+KLLP+SRFT
Sbjct:   42 EGPPAFVIELGSFVHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSATSFQAGDKVFISPDKLLPLSRFT 134

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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: K8ZCA3_NANGC (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZCA3_NANGC)

HSP 1 Score: 149 bits (377), Expect = 6.700e-44
Identity = 67/97 (69.07%), Postives = 83/97 (85.57%), Query Frame = 0

Query:   34 GYDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTG 130
            GYDEGPP +VVE G+FVH VEGEML K+T+  +PYFNAG +LENKT++GKV+E+LGPIN   FTVKPD+GV+A SF+  DK+YIG +KLLP+SRFTG
Sbjct:   35 GYDEGPPEQVVEAGAFVHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTG 131

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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A024U6J9_9STRA (H/ACA ribonucleoprotein complex subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U6J9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 7.450e-44
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 0

Query:   35 YDEGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEG 132
            ++EGPPA VVELG F+HA E EM+YK T   VPYFNAGA+LENKTKIGKVDEILG IN  +FTVKPD+GV A SF+ GDKVYI P+KLLP+SRFT +G
Sbjct:   38 FEEGPPATVVELGVFLHACEDEMVYKSTSDKVPYFNAGAFLENKTKIGKVDEILGAINDVMFTVKPDAGVTAKSFKAGDKVYISPDKLLPLSRFTDQG 135

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BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Match: A0A0W8CG70_PHYNI (H/ACA ribonucleoprotein complex subunit n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CG70_PHYNI)

HSP 1 Score: 149 bits (377), Expect = 1.030e-43
Identity = 71/97 (73.20%), Postives = 82/97 (84.54%), Query Frame = 0

Query:   37 EGPPAEVVELGSFVHAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKPDSGVNATSFQDGDKVYIGPEKLLPMSRFTGEGG 133
            EGPPA VVELGSF+HA E EM+YK T+  VPYFNAGA+LENKT+IGKVDEILG IN  +FTVKPD+GV+A SF  GDKVYI P+KLLP+SRFT + G
Sbjct:   36 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSAASFHAGDKVYISPDKLLPLSRFTEKPG 132

The following BLAST results are available for this feature:

BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot

BLAST of mRNA_S-ischiensis_contig1.1162.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YSJ1_9STRA	1.180e-55	80.62	H/ACA ribonucleoprotein complex subunit n=1 Tax=Tr...	[more]
A0A6H5KV55_9PHAE	8.830e-50	73.47	H/ACA ribonucleoprotein complex subunit n=1 Tax=Ec...	[more]
A0A7S3USE8_HETAK	1.250e-49	76.77	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A7S2UZ93_9STRA	2.480e-47	72.73	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
T0QNK0_SAPDV	2.680e-46	74.75	H/ACA ribonucleoprotein complex subunit n=2 Tax=Sa...	[more]
A0A6A4XZY0_9STRA	1.380e-44	72.45	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A3M6VHN5_9STRA	3.540e-44	76.34	H/ACA ribonucleoprotein complex subunit n=1 Tax=Pe...	[more]
K8ZCA3_NANGC	6.700e-44	69.07	H/ACA ribonucleoprotein complex subunit (Fragment)...	[more]
A0A024U6J9_9STRA	7.450e-44	72.45	H/ACA ribonucleoprotein complex subunit n=2 Tax=Ap...	[more]
A0A0W8CG70_PHYNI	1.030e-43	73.20	H/ACA ribonucleoprotein complex subunit n=2 Tax=Ph...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230		coord: 39..129 e-value: 7.1E-35 score: 120.7
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 33..129 e-value: 2.0E-32 score: 112.1
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 7..129
None	No IPR available	PANTHER	PTHR23237:SF6	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1	coord: 7..129
None	No IPR available	PRODOM	PD020235		coord: 45..128 e-value: 1.0E-27 score: 301.0
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 44..117

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-ischiensis_contig1	contig	S-ischiensis_contig1:7869869..7870400 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Schizocladia ischiensis KU_0333	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-ischiensis_contig1.1162.1	mRNA_S-ischiensis_contig1.1162.1	Schizocladia ischiensis KU_0333	mRNA	S-ischiensis_contig1 7869845..7870400 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-ischiensis_contig1.1162.1 ID=prot_S-ischiensis_contig1.1162.1|Name=mRNA_S-ischiensis_contig1.1162.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=133bp
MRPPRGRGDRGGRFSRGGRSPGRGGRFGGRGGRGYDEGPPAEVVELGSFV
HAVEGEMLYKMTHSMVPYFNAGAYLENKTKIGKVDEILGPINAALFTVKP
DSGVNATSFQDGDKVYIGPEKLLPMSRFTGEGG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR038664	Gar1/Naf1_Cbf5-bd_sf
IPR007504	H/ACA_rnp_Gar1/Naf1
IPR009000	Transl_B-barrel_sf