mRNA_S-ischiensis_contig1.1134.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1134.1
Unique NamemRNA_S-ischiensis_contig1.1134.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.1134.1 vs. uniprot
Match: D8LNZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ6_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.760e-27
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 2 
Query:    5 QMIRQLEGGVRDLASARGLIRVLFSSLVASRRGQKQKGGVAKELQEQLDAVSSALEEEQGRAKAERRSYDQKLTRAAADYEQKLRGLIDHTDMSSLLEAAI 307
            QMI +LE GV DL  A+G+IRVLFSSLVASRRG KQK G AK  QE+LD    ALE+ Q   + E RSYD+KLT   ADYE+K+ GLI+HT MS LL AAI
Sbjct:   87 QMIEELESGVSDLKGAKGIIRVLFSSLVASRRGLKQKTGAAKGFQEELDKQKRALEDTQELRQTELRSYDRKLTSLTADYERKINGLINHTGMSGLLHAAI 187
[Close]
BLAST of mRNA_S-ischiensis_contig1.1134.1 vs. uniprot
Match: A0A6H5KW93_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW93_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.490e-26
Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 2 
Query:    5 QMIRQLEGGVRDLASARGLIRVLFSSLVASRRGQKQKGGVAKELQEQLDAVSSALEEEQGRAKAERRSYDQKLTRAAADYEQKLRGLIDHTDMSSLLEAAI 307
            QMI +LE GV DL  A+G+IRVLFSSLVA+RRG KQK G  K  QE+LD    ALE+ Q   + E RSYD+KLT   ADYE+K+ GLI+HT MS LL AAI
Sbjct: 1150 QMIEELESGVSDLKGAKGIIRVLFSSLVAARRGLKQKTGAVKGFQEELDKQRRALEDTQELRQTELRSYDRKLTSLTADYERKINGLINHTGMSGLLHAAI 1250
[Close]
BLAST of mRNA_S-ischiensis_contig1.1134.1 vs. uniprot
Match: A0A835YLV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.000e-6
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 2 
Query:   38 DLASARGLIRVLFSSLVASRRGQKQKGGVAKELQEQLDAVSSALEEEQGRAKAERRSYDQ 217
            DL+SA   +RVLF+SLVA+RRGQ+Q+      L+ QL     ALEE Q R + E R YDQ
Sbjct:  755 DLSSAHAAVRVLFTSLVAARRGQRQRQEAVAALERQLRESKEALEETQERCQRELRGYDQ 814
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNZ6_ECTSI2.760e-2763.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW93_9PHAE3.490e-2661.39Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A835YLV6_9STRA6.000e-651.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7738096..7739045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size476
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1134.1prot_S-ischiensis_contig1.1134.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7738103..7739045 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.4300132-UTR-S-ischiensis_contig1:7738095..77381021622815485.4300132-UTR-S-ischiensis_contig1:7738095..7738102Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7738096..7738102 +
1695739728.7004566-UTR-S-ischiensis_contig1:7738095..77381021695739728.7004566-UTR-S-ischiensis_contig1:7738095..7738102Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7738096..7738102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.4409719-CDS-S-ischiensis_contig1:7738102..77382341622815485.4409719-CDS-S-ischiensis_contig1:7738102..7738234Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7738103..7738234 +
1695739728.71734-CDS-S-ischiensis_contig1:7738102..77382341695739728.71734-CDS-S-ischiensis_contig1:7738102..7738234Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7738103..7738234 +
1622815485.4520507-CDS-S-ischiensis_contig1:7738709..77390451622815485.4520507-CDS-S-ischiensis_contig1:7738709..7739045Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7738710..7739045 +
1695739728.7299445-CDS-S-ischiensis_contig1:7738709..77390451695739728.7299445-CDS-S-ischiensis_contig1:7738709..7739045Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7738710..7739045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1134.1

>prot_S-ischiensis_contig1.1134.1 ID=prot_S-ischiensis_contig1.1134.1|Name=mRNA_S-ischiensis_contig1.1134.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=156bp
MIRQLEGGVRDLASARGLIRVLFSSLVASRRGQKQKGGVAKELQEQLDAV
SSALEEEQGRAKAERRSYDQKLTRAAADYEQKLRGLIDHTDMSSLLEAAI
GKGPPQEAQAGAGEVGGTEAGASATGSEVKAAVTGVSAGGSKQGLPPMVK
ERRSSL
back to top

mRNA from alignment at S-ischiensis_contig1:7738096..7739045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1134.1 ID=mRNA_S-ischiensis_contig1.1134.1|Name=mRNA_S-ischiensis_contig1.1134.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=950bp|location=Sequence derived from alignment at S-ischiensis_contig1:7738096..7739045+ (Schizocladia ischiensis KU_0333)
GGAGCAGATGATCCGGCAGCTGGAGGGCGGGGTGCGGGACCTGGCCTCGG
CCCGTGGGCTGATCCGCGTGCTCTTCAGCAGCCTGGTGGCGTCGCGCCGT
GGCCAGAAGCAGAAGGGGGGCGTCGCCAAGGAGCTACAGGTGGGTGATTG
CGCATGGAAACGCTACAGATTGTAGGAACACAGTGTGTACTGTACACTCC
GTCTCGATCGAGGCACGTGGTCAATGGTCTCAGGACTACGGCAAGCACCA
TGTGAGTACATACACTGTACAATAGTACTGCACTGGTACTCCTGCTGCGT
CTCGGTCTCGGATTGAGTGCTTGGCCAATGGCCTTCGGTTTGCAGCAAGC
ACAAGGTGAGCACAGATCATTTAGTACCGGTGCTTGGAAGTACTCAAGCA
CTGAATACATTGCAGTGCTTTGTACTTCCAAGTACTGCACTGTACAGTAG
TATCTACTCGATAGTACGTACTTCGAAGTACTTCCAAGTGCTCGTGCTGC
GATTTGAAGCACTCTATAACTGTGCTTGGAGTTTGTTTGGGCGCCGGGCG
GTTTCCCCGACACGCGTGAGTGTTGGCACAAGCCGCTCACATGCCCCCCA
ATGGATTCCTGTAGGAGCAACTGGACGCGGTGTCGTCGGCCCTGGAGGAG
GAGCAGGGCCGCGCCAAGGCCGAGAGGCGCAGCTACGACCAGAAGCTTAC
CCGCGCTGCCGCCGACTATGAGCAGAAGCTCCGCGGCCTCATCGACCACA
CCGACATGAGCAGCTTGCTCGAGGCTGCCATTGGCAAAGGGCCCCCGCAG
GAGGCCCAGGCCGGCGCCGGCGAGGTTGGAGGGACCGAAGCAGGGGCTTC
CGCCACTGGTTCAGAGGTGAAAGCGGCGGTGACGGGTGTTTCCGCCGGGG
GGTCGAAGCAGGGGCTTCCGCCCATGGTTAAGGAGCGGCGGAGCTCGTTG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:7738096..7739045+

>mRNA_S-ischiensis_contig1.1134.1 ID=mRNA_S-ischiensis_contig1.1134.1|Name=mRNA_S-ischiensis_contig1.1134.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=936bp|location=Sequence derived from alignment at S-ischiensis_contig1:7738096..7739045+ (Schizocladia ischiensis KU_0333)
ATGATCCGGCAGCTGGAGGGCGGGGTGCGGGACCTGGCCTCGGCCCGTGG
GCTGATCCGCGTGCTCTTCAGCAGCCTGGTGGCGTCGCGCCGTGGCCAGA
AGCAGAAGGGGGGCGTCGCCAAGGAGCTACAGATGATCCGGCAGCTGGAG
GGCGGGGTGCGGGACCTGGCCTCGGCCCGTGGGCTGATCCGCGTGCTCTT
CAGCAGCCTGGTGGCGTCGCGCCGTGGCCAGAAGCAGAAGGGGGGCGTCG
CCAAGGAGCTACAGGAGCAACTGGACGCGGTGTCGTCGGCCCTGGAGGAG
GAGCAGGGCCGCGCCAAGGCCGAGAGGCGCAGCTACGACCAGAAGCTTAC
CCGCGCTGCCGCCGACTATGAGCAGAAGCTCCGCGGCCTCATCGACCACA
CCGACATGAGCAGCTTGCTCGAGGCTGCCATTGGCAAAGGGCCCCCGCAG
GAGGCCCAGGCCGGCGCCGGCGAGGTTGGAGGGACCGAAGCAGGGGCTTC
CGCCACTGGTTCAGAGGTGAAAGCGGCGGTGACGGGTGTTTCCGCCGGGG
GGTCGAAGCAGGGGCTTCCGCCCATGGTTAAGGAGCGGCGGAGCTCGTTG
GAGCAACTGGACGCGGTGTCGTCGGCCCTGGAGGAGGAGCAGGGCCGCGC
CAAGGCCGAGAGGCGCAGCTACGACCAGAAGCTTACCCGCGCTGCCGCCG
ACTATGAGCAGAAGCTCCGCGGCCTCATCGACCACACCGACATGAGCAGC
TTGCTCGAGGCTGCCATTGGCAAAGGGCCCCCGCAGGAGGCCCAGGCCGG
CGCCGGCGAGGTTGGAGGGACCGAAGCAGGGGCTTCCGCCACTGGTTCAG
AGGTGAAAGCGGCGGTGACGGGTGTTTCCGCCGGGGGGTCGAAGCAGGGG
CTTCCGCCCATGGTTAAGGAGCGGCGGAGCTCGTTG
back to top