mRNA_S-ischiensis_contig1.518.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.518.1
Unique NamemRNA_S-ischiensis_contig1.518.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:3534420..3536534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size288
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.518.1prot_S-ischiensis_contig1.518.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 3534420..3536534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815351.7470384-CDS-S-ischiensis_contig1:3534419..35345161622815351.7470384-CDS-S-ischiensis_contig1:3534419..3534516Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 3534420..3534516 +
1695739655.158525-CDS-S-ischiensis_contig1:3534419..35345161695739655.158525-CDS-S-ischiensis_contig1:3534419..3534516Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 3534420..3534516 +
1622815351.759111-CDS-S-ischiensis_contig1:3534861..35349861622815351.759111-CDS-S-ischiensis_contig1:3534861..3534986Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 3534862..3534986 +
1695739655.1701114-CDS-S-ischiensis_contig1:3534861..35349861695739655.1701114-CDS-S-ischiensis_contig1:3534861..3534986Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 3534862..3534986 +
1622815351.7687962-CDS-S-ischiensis_contig1:3536468..35365341622815351.7687962-CDS-S-ischiensis_contig1:3536468..3536534Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 3536469..3536534 +
1695739655.183117-CDS-S-ischiensis_contig1:3536468..35365341695739655.183117-CDS-S-ischiensis_contig1:3536468..3536534Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 3536469..3536534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.518.1

>prot_S-ischiensis_contig1.518.1 ID=prot_S-ischiensis_contig1.518.1|Name=mRNA_S-ischiensis_contig1.518.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=96bp
GAGGGTVVAPRGRREGRRSSGPHRSRGGASSQAHRLGVSTKARGARGSHG
HRLSRQGNGNDAKSLRRVSDAALEVASNVLAQASSMSAGGRLAGNS
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mRNA from alignment at S-ischiensis_contig1:3534420..3536534+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.518.1 ID=mRNA_S-ischiensis_contig1.518.1|Name=mRNA_S-ischiensis_contig1.518.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2115bp|location=Sequence derived from alignment at S-ischiensis_contig1:3534420..3536534+ (Schizocladia ischiensis KU_0333)
GGAGCCGGTGGGGGCACCGTTGTGGCTCCGAGGGGACGGAGGGAGGGACG
GCGATCAAGCGGGCCCCACCGCTCAAGAGGAGGAGCATCAAGTCAAGGTG
GGCGTGGGTTTTCGGTTTGCTCACCGTCCGCCGATCCCGGGGCTTACGGC
GTGCATTTCGACCCGTCACGATGGTGACGACGATGATGATGAAGAAAAGA
AGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGAAGGAGAAGAAGGAGAAGCAGAAGCAGATACCTCAGAACACATT
GTTAGACATGTAGGGTACAGCGTACCACGGTGGTGAACGAAACGTCCCCC
GTTCCCCTCCCCTCACGCTGACACTCGCTCAATACTCACTATGGCACTAC
TGCACTGTACTATCGTTCCCCCCACTGTTTGCTTGGAACCAGCTCATCGG
CTGGGGGTGTCTACCAAGGCTAGGGGTGCCCGGGGCAGCCATGGGCACCG
CCTGAGCCGCCAGGGCAACGGAAACGATGCCAAGAGCCTGCGACGGGTGT
CGGACGCAGCGTTGGAGGTACGGGGAGATTTGTGTTTGGCGAAATGGCTT
GTGAAATGATTGCACTGGTCAGTGTTTTGCAAGAAGATAGAAAGCGAGTG
GGAAAGAGGAGGTGTTCCTACTTACGCGAGTTCAGGGCCCCATCCCCGTT
GGTTAGTTAGTTACGGCAAGCACGATGTGAGCACATATACCACGTAGTAT
ATATATAAGAGCTGGTCAGTTGCAACCGCCAAAACGTGACGGGCGGACGG
GTATGCTGTGCGCGCCTGTATCAAGGCAGCGGTGCACGGAAAAGTGTCAA
CGGGCCCTCTATGATTGTGGAATGTATCAAATCATTAATCGCGCCCCCAC
TTACCGCCCGAAGGTGTGTAAGGACCGGTACCTGCTTTGGGCGCCTTTCA
GCCGTTAATCTGACTCAAGTCGGACAAATGTTGGGCGCGCTATAGTGCGA
GGGACGAAACAATGTGGAACACAGAGGCTCGGGGATCAGTTCGCTAACGG
AAAGGATCAGTGCTTATCTCCAAAATATATGGAGAAATATGCCTATGCTG
GATTGCTGTGAAGCACACCACCCCACCAAGGTGAGGGGTTGGTAAGTATC
CTTGGCCTGTCCTCCACTGAAAATGCAGATCGGCCGCGGCAACTGCACTT
GTTTTTGTCCGGCCCGCCAACCGTTGGCTTGCTCGCGATCGAGTCAATCG
GGGTCATGGTTTGATCGCCATGCCGCTTGCATTACTTAGTGACATACTTT
GAGGTAATTTCAATACAACGCTCGCAGTCCACGTTGTACAGTAGAAGTAC
TTCGACGTTTAGTACTTGGGAAGTGCTTTTACTTCGTAGTACGTATACTT
GGGTGTTGATTGGCATTGTGTATCCATCGAGGGAGGGGCCCCGATCCGTC
TTGGTCGCGGCGCGGGGTCAATGGTCTCGGGACTATGGCAAGCACTGCTA
GGTGTGAGTACACACGAAGTACATACGAGTATATCAAGGAAGTAGTACAA
TGGTACTCGAGTACCAGGCACTGTTAGGTGTGAGTACATACGAACTACAT
ACGAGTATATCAAGGAAGTAGTACAGTGGTACTGTACTCGAGTACCAAGA
CTGTTGTTTGGTGTGAGCTCCTTGAAGGGTGACATCTCCCACTGCCAAGA
GTTGTGTACGGTCGGAGTTTCGGCCCATGGCTTCAGGCGGGGCCGAGCGC
CTTTTACCTTCACGGGCAGATTGTCGGGCTCGGGCGGGGAAGGGCGTGAG
ACAGAGTGCCAGACAGTTCAGTGGACAGACAAGACAGACGCATACAAGCA
GACATGTGATTGCATCCCCGTCCAGTTTATTTTTGTTTTCTTTTTGCCCT
GCGAGGGGAAGAAGGGCTTCGTTGAGTCCCGTTTCGGGACGAGCCTTTTG
GCACGGGGCCTGGAACTCGCTGCTTACCTACCACGCAAATACTTATCCGT
GGCGCACCACTCATCGCGCTTCATTCCCCTCATCATCCCGCACGGGCAGG
TTGCGTCCAACGTGCTCGCACAGGCTTCCTCCATGAGTGCCGGTGGCCGT
CTCGCTGGCAACAGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:3534420..3536534+

>mRNA_S-ischiensis_contig1.518.1 ID=mRNA_S-ischiensis_contig1.518.1|Name=mRNA_S-ischiensis_contig1.518.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=576bp|location=Sequence derived from alignment at S-ischiensis_contig1:3534420..3536534+ (Schizocladia ischiensis KU_0333)
GGAGCCGGTGGGGGCACCGTTGTGGCTCCGAGGGGACGGAGGGAGGGACG
GCGATCAAGCGGGCCCCACCGCTCAAGAGGAGGAGCATCAAGTCAAGGGA
GCCGGTGGGGGCACCGTTGTGGCTCCGAGGGGACGGAGGGAGGGACGGCG
ATCAAGCGGGCCCCACCGCTCAAGAGGAGGAGCATCAAGTCAAGCTCATC
GGCTGGGGGTGTCTACCAAGGCTAGGGGTGCCCGGGGCAGCCATGGGCAC
CGCCTGAGCCGCCAGGGCAACGGAAACGATGCCAAGAGCCTGCGACGGGT
GTCGGACGCAGCGTTGGAGCTCATCGGCTGGGGGTGTCTACCAAGGCTAG
GGGTGCCCGGGGCAGCCATGGGCACCGCCTGAGCCGCCAGGGCAACGGAA
ACGATGCCAAGAGCCTGCGACGGGTGTCGGACGCAGCGTTGGAGGTTGCG
TCCAACGTGCTCGCACAGGCTTCCTCCATGAGTGCCGGTGGCCGTCTCGC
TGGCAACAGTGTTGCGTCCAACGTGCTCGCACAGGCTTCCTCCATGAGTG
CCGGTGGCCGTCTCGCTGGCAACAGT
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