mRNA_S-ischiensis_contig1.1072.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1072.1
Unique NamemRNA_S-ischiensis_contig1.1072.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig1.1072.1 vs. uniprot
Match: D7FW97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW97_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.670e-31
Identity = 58/115 (50.43%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   16 SRRACWHRAVRGWWADPDAINHYFGPETAMYFAWMNFYTAWLLLPGLASIVVYSHKIYFGYTEDNHPYTPFFTLFVVLWACLFQTFWRRARWKWAWRFGTALVREEEAPRPGFKG 360
            SR   W   + G  AD   +N+YFGPETA YFAW+NFY  WLL+PG+A ++V  HK   G   DN+ +TP + L V+LWA  FQ +W+R   +W+W+FGTALV EEE  R  F G
Sbjct:  165 SRTRVWENCLYGVGADVKGVNNYFGPETAFYFAWINFYFRWLLVPGIAGLLVTVHKAIVGRETDNYRWTPLYALIVMLWAASFQKYWKRTCAEWSWKFGTALVSEEEILRAEFVG 279          
BLAST of mRNA_S-ischiensis_contig1.1072.1 vs. uniprot
Match: A0A813JHV4_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JHV4_POLGL)

HSP 1 Score: 100 bits (249), Expect = 3.270e-22
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = 1
Query:    7 EHGSRRACWHRAVRGWWADPDAINHYFGPETAMYFAWMNFYTAWLLLPGLASIVVYSHKIYFGYTEDNHPYTPFFTLFVVLWACLFQTFWRRARWKWAWRFGT------------ALVREEEAPRPGFKG 360
            E  +R A W   +   +   + +  YFG + A YFAW+N +TAWL +P L  +  Y+H    G+T D+HP+ PF++LF VLW  +F   W RA   WAW++G             A  + EE  RP F G
Sbjct:  160 ERSARLAVWQSGMFKMFVPVEPVQEYFGSQVAFYFAWLNSFTAWLSVPALIGLACYAHMQVHGFTVDDHPFLPFYSLFAVLWGVVFVCHWERASAAWAWKWGVLGAQRDSRVFQNAAAQIEEQVRPEFTG 289          
BLAST of mRNA_S-ischiensis_contig1.1072.1 vs. uniprot
Match: A0A7S2RRJ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRJ8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.300e-22
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   67 DAINHYFGPETAMYFAWMNFYTAWLLLPGLASIVVYSHKIYFGYTEDNHPYTPFFTLFVVLWACLFQTFWRRARWKWAWRFGTALVREEEAPRPGFKG 360
            + I  Y G   A YFAWMNF+T  L+LP    + +Y HK+Y+G+T +NHPY P + LF+V WA LF   W+R    WA ++GT    E +  RP F+G
Sbjct:    1 EEIQAYLGSHIAFYFAWMNFFTQSLVLPAFLGLAMYLHKVYYGFTVENHPYLPLYALFMVFWAILFVQCWKRKSASWACQWGTIGEAERDDVRPEFRG 98          
BLAST of mRNA_S-ischiensis_contig1.1072.1 vs. uniprot
Match: A0A812TEM0_9DINO (ANO10 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812TEM0_9DINO)

HSP 1 Score: 90.1 bits (222), Expect = 1.440e-18
Identity = 50/120 (41.67%), Postives = 65/120 (54.17%), Query Frame = 1
Query:   19 RRACWHRAVRGWWADPDAINHYFGPETAMYFAWMNFYTAWLLLPGLASIVVYSHKIYFGYTEDNHPYTPFFTLFVVLWACLFQTFW--RRARWKWAWRF-GTALV---REEEAPRPGFKG 360
            RRA W  ++R       +++ YFG E A+YFAWMN +T WLL P    +  Y    +FGYT D+ PY PF +LFVV W+  F   W  R +   W W   G  L+   R EE  RPG+ G
Sbjct:  179 RRALWKVSLRNILTPVASVHRYFGSEVALYFAWMNHFTLWLLAPAGVGVAAYCRMNFFGYTVDDDPYLPFHSLFVVFWSACFLRSWDQRCSELSWHWNVHGIELLTGLRPEEY-RPGYHG 297          
BLAST of mRNA_S-ischiensis_contig1.1072.1 vs. uniprot
Match: A0A1Q9EWA3_SYMMI (Anoctamin-10 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EWA3_SYMMI)

HSP 1 Score: 84.7 bits (208), Expect = 5.020e-17
Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 1
Query:   70 AINHYFGPETAMYFAWMNFYTAWLLLPGLASIVVYSHKIYFGYTEDNHPYTPFFTLFVVLWACLFQTFW--RRARWKWAWRF-GTALV---REEEAPRPGFKG 360
            +++ YFG E A+YFAWMN +T WLL P    +  Y    +FGYT D+ PY PF +LFVV W+  F   W  R +   W W   G  L+   R EE  RPG+ G
Sbjct:   35 SVHRYFGSEVALYFAWMNHFTLWLLAPAGVGVAAYCRMNFFGYTVDDDPYLPFHSLFVVFWSACFLRSWDQRCSELSWHWNVHGIELLTGLRPEEY-RPGYHG 136          
BLAST of mRNA_S-ischiensis_contig1.1072.1 vs. uniprot
Match: A0A7S0DS14_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DS14_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 1.430e-16
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 1
Query:   67 DAINHYFGPETAMYFAWMNFYTAWLLLPGLASIVVYSHKIYFG-YTEDNHPYTPFFTLFVVLWACLFQTFWRRARWKWAWRFGTALVREEEAPRPGFKG 360
            + I  Y+G E A YFAW++F+T WLL P   S+V +S   + G YT D+ PY PFF+LFV+ W+ L+  +W R    +A R+GT     +E+ RP F+G
Sbjct:  193 NGIREYYGSEVAFYFAWLDFFTLWLLAP---SLVGFSLWYFRGEYTVDDSPYIPFFSLFVIFWSALYIKYWDRQASDFACRWGTLDAARKESIRPQFEG 288          
BLAST of mRNA_S-ischiensis_contig1.1072.1 vs. uniprot
Match: A0A812T4N2_9DINO (Ano10 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812T4N2_9DINO)

HSP 1 Score: 80.5 bits (197), Expect = 3.480e-15
Identity = 38/99 (38.38%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   67 DAINHYFGPETAMYFAWMNFYTAWLLLPGLASIVVYSHKIYFGYTEDNHPYTPFFTLFVVLWACLFQTFWRRARWKWAWRFGTALVREEEAPRPGFKGV 363
            D I  YFG   A YFAW+ FYT WL+ P L    ++  ++++G  +    + P F+LF+ LW+ LF  FW+R   + A R+G      EE  RP F+G 
Sbjct:  357 DRIAAYFGETVAFYFAWLEFYTQWLVFPALVGAALFVAQVWYGTVDVT--WVPLFSLFMALWSTLFLEFWKRRNAELAHRWGVLNYEHEEVTRPQFRGT 453          
BLAST of mRNA_S-ischiensis_contig1.1072.1 vs. uniprot
Match: A0A5A8E694_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E694_CAFRO)

HSP 1 Score: 80.5 bits (197), Expect = 3.490e-15
Identity = 38/99 (38.38%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   67 DAINHYFGPETAMYFAWMNFYTAWLLLPGLASIVVYSHKIYFGYTEDNHPYTPFFTLFVVLWACLFQTFWRRARWKWAWRFGTALVREEEAPRPGFKGV 363
            D I  YFG   A YFAW+ FYT WL+ P L    ++  ++++G  +    + P F+LF+ LW+ LF  FW+R   + A R+G      EE  RP F+G 
Sbjct:  510 DRIAAYFGETVAFYFAWLEFYTQWLVFPALVGAALFVAQVWYGTVDVT--WVPLFSLFMALWSTLFLEFWKRRNAELAHRWGVLNYEHEEVTRPQFRGT 606          
BLAST of mRNA_S-ischiensis_contig1.1072.1 vs. uniprot
Match: A0A5A8DR02_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DR02_CAFRO)

HSP 1 Score: 80.5 bits (197), Expect = 3.560e-15
Identity = 38/99 (38.38%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   67 DAINHYFGPETAMYFAWMNFYTAWLLLPGLASIVVYSHKIYFGYTEDNHPYTPFFTLFVVLWACLFQTFWRRARWKWAWRFGTALVREEEAPRPGFKGV 363
            D I  YFG   A YFAW+ FYT WL+ P L    ++  ++++G  +    + P F+LF+ LW+ LF  FW+R   + A R+G      EE  RP F+G 
Sbjct:  797 DRIAAYFGETVAFYFAWLEFYTQWLVFPALVGAALFVAQVWYGTVDVT--WVPLFSLFMALWSTLFLEFWKRRNAELAHRWGVLNYEHEEVTRPQFRGT 893          
BLAST of mRNA_S-ischiensis_contig1.1072.1 vs. uniprot
Match: A0A8J2SNX7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNX7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.620e-15
Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 1
Query:   52 WWA----DPDAINHYFGPETAMYFAWMNFYTAWLLLPGLASIVVYSHKIYFGYTEDNHPYTPFFTLFVVLWACLFQTFWRRARWKWAWRFGTALVREEEAPRPGFKGV 363
            WWA        I+  FG + A+YFAWMNF+  WLL+P L    VY  +I  G + D+  + P + L V LWA LF  FW R   + A   G  L+  +   RPG++G 
Sbjct:  200 WWAWVCAPSQKIHKAFGSDVALYFAWMNFFQLWLLIPSLVGGYVYHLRIEEGVSIDDDQWAPVYALAVCLWAALFCKFWSRREAQVAVDHGDVLLASDGGVRPGYRGA 307          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW97_ECTSI2.670e-3150.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A813JHV4_POLGL3.270e-2236.92Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A7S2RRJ8_9STRA3.300e-2244.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812TEM0_9DINO1.440e-1841.67ANO10 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A1Q9EWA3_SYMMI5.020e-1743.69Anoctamin-10 n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7S0DS14_9EUKA1.430e-1643.43Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A812T4N2_9DINO3.480e-1538.38Ano10 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A5A8E694_CAFRO3.490e-1538.38Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DR02_CAFRO3.560e-1538.38Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A8J2SNX7_9STRA4.620e-1538.89Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7405564..7407439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue2.5e-27
Seed eggNOG ortholog2880.D7FW97
KEGG koko:K19327
KEGG TC1.A.17.1
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2513@1,KOG2513@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Hectar predicted targeting categorysignal anchor
Exons3
Model size369
Cds size366
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1072.1prot_S-ischiensis_contig1.1072.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7405564..7407437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.1355956-CDS-S-ischiensis_contig1:7405563..74056591622815481.1355956-CDS-S-ischiensis_contig1:7405563..7405659Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7405564..7405659 +
1695739726.3641636-CDS-S-ischiensis_contig1:7405563..74056591695739726.3641636-CDS-S-ischiensis_contig1:7405563..7405659Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7405564..7405659 +
1622815481.146732-CDS-S-ischiensis_contig1:7406650..74068501622815481.146732-CDS-S-ischiensis_contig1:7406650..7406850Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7406651..7406850 +
1695739726.3824446-CDS-S-ischiensis_contig1:7406650..74068501695739726.3824446-CDS-S-ischiensis_contig1:7406650..7406850Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7406651..7406850 +
1622815481.1764681-CDS-S-ischiensis_contig1:7407367..74074371622815481.1764681-CDS-S-ischiensis_contig1:7407367..7407437Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7407368..7407437 +
1695739726.3942719-CDS-S-ischiensis_contig1:7407367..74074371695739726.3942719-CDS-S-ischiensis_contig1:7407367..7407437Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7407368..7407437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1072.1

>prot_S-ischiensis_contig1.1072.1 ID=prot_S-ischiensis_contig1.1072.1|Name=mRNA_S-ischiensis_contig1.1072.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
THEHGSRRACWHRAVRGWWADPDAINHYFGPETAMYFAWMNFYTAWLLLP
GLASIVVYSHKIYFGYTEDNHPYTPFFTLFVVLWACLFQTFWRRARWKWA
WRFGTALVREEEAPRPGFKGVK
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mRNA from alignment at S-ischiensis_contig1:7405564..7407439+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1072.1 ID=mRNA_S-ischiensis_contig1.1072.1|Name=mRNA_S-ischiensis_contig1.1072.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1876bp|location=Sequence derived from alignment at S-ischiensis_contig1:7405564..7407439+ (Schizocladia ischiensis KU_0333)
ACGCACGAGCACGGCAGCAGGAGGGCGTGCTGGCACCGTGCGGTGAGAGG GTGGTGGGCAGACCCGGACGCCATCAACCACTACTTTGGGCCTGAGGTGT GTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGCGCGTGTCC GTGTGTTTGTGTGTGCGCACACGCGCACGCATTATGTGCGCCTCGGTGCT TACTGGGCTACTTCGAAGTATGTGTTTATTTTTTGCTTGGAAGTACTCCA TCTGCAAGCTGTGTGTGCGCGCTTGACTGTGTACGTGCTGCCTTCCAAAC AATAGCTACTGTAGCAATTGCTTCCAATCGCGTGCCACACTGTTGAGGCA GTACCTGGGTGTGAGTACGAAGTACAGTCGCAGTACGCCAGTACAGTACA GCAGTACTGTGCCTGCACTGCATTACTTTTATGCACTGTACTCTAGTACG TGGTAGTAGTACTCGAGTACTGTAGGATAGAGCGAGAAAAGTGAGTAGAC AGGGGAAAGTGCTTTGCCTTCCGCCTAGTTCTCACACCCCCCAGGGGGAA GGGCCCAGCTCTCCCCCAGGGCAGGCCCCGCATGGGTGTCAACCCTTGTC TTTGGCACCCATGTCTCCCGATTGAAAAGCTGGCACTACCACCACCATCA CTACCACCATCACCACCCACCGCCGCCACCACCACCGGCCCCCACAACCA CCACCCATCACCACTCTCGCCGCCGCCAGTGCTCATCGCGACACACCGCC ACCGCCACCGCCCCCGCCACCCCCACCCTCCACCACCACCATCCGCCACC ACGCACCACGCACCGTCCATCACCACTGACTGTCACCACCACCCGACACT CATCACTACCCACCACCACCGCCACCGCCGCCGCCACCGGCCCCACCACC CTCCACCACCACGCACCGCCATCACCACTGTCACCACCACCAACGCTCAT CACCACCCACCACCGCCGCCACCCGCCGCCACCACCCCTACGCACCACCC ATCACGACGGCCACGGCCACGATCGCTCATGGTCACCCGCCGCCGACGCA CCGCCGCCACCACAACCGGGGTACGGGTGGGGGTCAGACGGCCATGTACT TCGCTTGGATGAACTTCTACACGGCCTGGCTGCTGCTGCCCGGTTTGGCC AGCATCGTGGTGTACAGCCACAAGATTTACTTTGGGTACACGGAGGACAA CCACCCGTACACGCCCTTCTTTACGCTCTTCGTGGTCCTGTGGGCTTGCC TCTTCCAGACCTTCTGGCGGAGGGCACGGTGGAAGTGGTGAGGGTCGGGC CGGTGGTAGGGGGGGGGCAAGGATTGACGTATCGACGCGCATGGGTAGGT ATTGCTGTGATGTATGCTTATTTCTATGTACTGTGCTCTAGGTTGTCACG GGACGCCCGGGGTAGATTGCTTTTGCGACATCAGCGCTTGGGTGTTCGGA AAAGGCACGTCCAAGTGATTCATCTGTCGGTCCAATACCAAGTGTTTAGT AGTACATACCCTCGCGTATGTTGTGGTACATGACAGTTGTACAGTGCGTA CCCAAGTATCTCGTACGAGCGTCTCACCTCACCTTGATACGTCGATCAAT GCTGCCTATTCAGCATCCGAGTAGCGGTATCCCGACAAACCAAAACTTCA GAGGGGGAGGAGGCGGGGCAATGCCTACACCGACCGCGCTAAATCTGAGC ACGGTTCAAGTCGCAGTGCTGTAGTTTGGATGTTGTTTTGTCTGCTATGG CGTGGCACGCGCGTTTATTACGGCATGACCGAATGTTTCCCGCCCTCGCT GCAGGGCGTGGCGGTTTGGGACGGCCCTGGTCCGTGAGGAGGAGGCCCCT CGCCCGGGCTTCAAGGGGGTCAAGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7405564..7407439+

>mRNA_S-ischiensis_contig1.1072.1 ID=mRNA_S-ischiensis_contig1.1072.1|Name=mRNA_S-ischiensis_contig1.1072.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig1:7405564..7407439+ (Schizocladia ischiensis KU_0333)
ACGCACGAGCACGGCAGCAGGAGGGCGTGCTGGCACCGTGCGGTGAGAGG
GTGGTGGGCAGACCCGGACGCCATCAACCACTACTTTGGGCCTGAGACGC
ACGAGCACGGCAGCAGGAGGGCGTGCTGGCACCGTGCGGTGAGAGGGTGG
TGGGCAGACCCGGACGCCATCAACCACTACTTTGGGCCTGAGACGGCCAT
GTACTTCGCTTGGATGAACTTCTACACGGCCTGGCTGCTGCTGCCCGGTT
TGGCCAGCATCGTGGTGTACAGCCACAAGATTTACTTTGGGTACACGGAG
GACAACCACCCGTACACGCCCTTCTTTACGCTCTTCGTGGTCCTGTGGGC
TTGCCTCTTCCAGACCTTCTGGCGGAGGGCACGGTGGAAGTGACGGCCAT
GTACTTCGCTTGGATGAACTTCTACACGGCCTGGCTGCTGCTGCCCGGTT
TGGCCAGCATCGTGGTGTACAGCCACAAGATTTACTTTGGGTACACGGAG
GACAACCACCCGTACACGCCCTTCTTTACGCTCTTCGTGGTCCTGTGGGC
TTGCCTCTTCCAGACCTTCTGGCGGAGGGCACGGTGGAAGTGGGCGTGGC
GGTTTGGGACGGCCCTGGTCCGTGAGGAGGAGGCCCCTCGCCCGGGCTTC
AAGGGGGTCAAGGGCGTGGCGGTTTGGGACGGCCCTGGTCCGTGAGGAGG
AGGCCCCTCGCCCGGGCTTCAAGGGGGTCAAG
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