mRNA_S-ischiensis_contig1.1070.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1070.1
Unique NamemRNA_S-ischiensis_contig1.1070.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1070.1 vs. uniprot
Match: D7FW98_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW98_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 9.230e-19
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 3 
Query:  267 MVWNRRKQVWVEV---AEAPAPVEDEAPKGPVVVSSNAYANGSNQNSGNFLGDRPMTRVHAPPGGASTFSFG 473
            MVWNRRKQ W+EV    E+P+     +P     +SSNAYA+G NQN+GNFL D+P+TR+HAPPGGAS+ SFG
Sbjct:    1 MVWNRRKQQWIEVDVTEESPSKAAAASPTSSTALSSNAYASGVNQNAGNFLTDKPITRIHAPPGGASSISFG 72
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BLAST of mRNA_S-ischiensis_contig1.1070.1 vs. uniprot
Match: A0A7S0X2V9_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X2V9_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 2.870e-9
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  339 PKGPVVVSSNAYANGSNQNSGNFLGDRPMTRVHAPPGGASTFSFGMGMDNEQSVPKTPAPPASAMAEA 542
            P      SSNA+ANGS+QN+GNF+ DRP TR+HAPPGG S  SFG   DN  S P T + P +A A A
Sbjct:  115 PSAAHAASSNAFANGSDQNNGNFITDRPTTRLHAPPGGHSQISFGT--DNVFSAPVTSSRPNTAAAAA 180
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BLAST of mRNA_S-ischiensis_contig1.1070.1 vs. uniprot
Match: G4YIZ7_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YIZ7_PHYSP)

HSP 1 Score: 63.2 bits (152), Expect = 3.400e-9
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 3 
Query:  315 PAPVEDEAPKGPVVVSSNAYANGSNQNSGNFLGDRPMTRVHAPPGGASTFSFG 473
            PAP +   P G    SSN+YA+GSNQN GN L DR +TR+HAPPGG S+  FG
Sbjct:   88 PAPHQQAQPAGRGGASSNSYASGSNQNCGNVLTDRRITRIHAPPGGVSSIHFG 140
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BLAST of mRNA_S-ischiensis_contig1.1070.1 vs. uniprot
Match: A0A2R5GBR3_9STRA (Protein SPIRAL1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBR3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.540e-9
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 3 
Query:  297 VEVAEAPAPVEDE------APKGPVV---VSSNAYANGSNQNSGNFLGDRPMTRVHAPPGGASTFSFG 473
            VE A  P P+ D+      AP   +    VSSNA+A+GSN N+GNF+ DRP TRVHAPPGG S  +FG
Sbjct:   75 VEQAPEPVPIVDKTNIATTAPAPGIEKGNVSSNAFASGSNMNAGNFITDRPTTRVHAPPGGRSQITFG 142
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BLAST of mRNA_S-ischiensis_contig1.1070.1 vs. uniprot
Match: A0A7S2RVM1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RVM1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 8.460e-9
Identity = 35/59 (59.32%), Postives = 39/59 (66.10%), Query Frame = 3 
Query:  297 VEVAEAPAPVEDEAPKGPVVVSSNAYANGSNQNSGNFLGDRPMTRVHAPPGGASTFSFG 473
            V  A AP   + E P    V SSNAYA GSNQN GNF+ +RP TRVHAPPGG S  +FG
Sbjct:  178 VHTAPAPGTKKVEPPVDSRV-SSNAYATGSNQNCGNFITERPTTRVHAPPGGVSNITFG 235
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BLAST of mRNA_S-ischiensis_contig1.1070.1 vs. uniprot
Match: K3X8R6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8R6_GLOUD)

HSP 1 Score: 61.2 bits (147), Expect = 2.390e-8
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 3 
Query:  360 SSNAYANGSNQNSGNFLGDRPMTRVHAPPGGASTFSFG 473
            SSN+YANGSNQN+GN L DR +TR+HAPPGG S+ +FG
Sbjct:  118 SSNSYANGSNQNAGNVLTDRRITRIHAPPGGTSSITFG 155
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BLAST of mRNA_S-ischiensis_contig1.1070.1 vs. uniprot
Match: C1MUJ1_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MUJ1_MICPC)

HSP 1 Score: 63.2 bits (152), Expect = 2.710e-8
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 3 
Query:  336 APKGPVVVSSNAYANGSNQNSGNFLGDRPMTRVHAPPGGASTFSFGMGMD 485
            AP     VSSNAYANG++QN GN++ DRP TR+HAPPGG S  S G G +
Sbjct:   89 APSQARAVSSNAYANGADQNCGNYITDRPSTRLHAPPGGVSQISLGGGYE 138
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BLAST of mRNA_S-ischiensis_contig1.1070.1 vs. uniprot
Match: A0A7S0NNN3_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NNN3_MICPS)

HSP 1 Score: 61.6 bits (148), Expect = 9.570e-8
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 3 
Query:  360 SSNAYANGSNQNSGNFLGDRPMTRVHAPPGGASTFSFGMG 479
            SSNA+ANG++QN GNF+ DRP TR+HAPPGG S  SFG G
Sbjct:   90 SSNAFANGADQNCGNFITDRPTTRLHAPPGGQSQISFGGG 129
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BLAST of mRNA_S-ischiensis_contig1.1070.1 vs. uniprot
Match: A0A7S3XEE4_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XEE4_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 9.650e-8
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 3 
Query:  363 SNAYANGSNQNSGNFLGDRPMTRVHAPPGGASTFSF 470
            SNAYANG+NQN GN L DR  TR+HAPPGGASTF  
Sbjct:   76 SNAYANGANQNCGNVLTDRSTTRLHAPPGGASTFKL 111
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BLAST of mRNA_S-ischiensis_contig1.1070.1 vs. uniprot
Match: A4RZ02_OSTLU (SAP domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RZ02_OSTLU)

HSP 1 Score: 61.6 bits (148), Expect = 1.150e-7
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 3 
Query:  354 VVSSNAYANGSNQNSGNFLGDRPMTRVHAPPGGASTFSFG 473
            + SSNA+A+G+NQNSGN L DRP TR HAPPGG S+ SFG
Sbjct:    1 MTSSNAFASGANQNSGNVLTDRPTTRTHAPPGGRSSISFG 40
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW98_ECTSI9.230e-1959.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0X2V9_9CHLO2.870e-955.88Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
G4YIZ7_PHYSP3.400e-958.49Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A2R5GBR3_9STRA3.540e-952.94Protein SPIRAL1 n=1 Tax=Hondaea fermentalgiana Tax... [more]
A0A7S2RVM1_9STRA8.460e-959.32Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
K3X8R6_GLOUD2.390e-871.05Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
C1MUJ1_MICPC2.710e-860.00Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S0NNN3_MICPS9.570e-870.00Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S3XEE4_9CHLO9.650e-875.00Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A4RZ02_OSTLU1.150e-770.00SAP domain-containing protein n=1 Tax=Ostreococcus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7401206..7402015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue4.2e-16
Seed eggNOG ortholog2880.D7FW98
EggNOG OGs2E6EP@1,2SD4N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_003880.1
Exons2
Model size648
Cds size453
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1070.1prot_S-ischiensis_contig1.1070.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7401206..7401821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815480.9990585-CDS-S-ischiensis_contig1:7401205..74015821622815480.9990585-CDS-S-ischiensis_contig1:7401205..7401582Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7401206..7401582 -
1695739726.294519-CDS-S-ischiensis_contig1:7401205..74015821695739726.294519-CDS-S-ischiensis_contig1:7401205..7401582Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7401206..7401582 -
1622815481.0138745-CDS-S-ischiensis_contig1:7401745..74018211622815481.0138745-CDS-S-ischiensis_contig1:7401745..7401821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7401746..7401821 -
1695739726.3055525-CDS-S-ischiensis_contig1:7401745..74018211695739726.3055525-CDS-S-ischiensis_contig1:7401745..7401821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7401746..7401821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.0254407-UTR-S-ischiensis_contig1:7401821..74020151622815481.0254407-UTR-S-ischiensis_contig1:7401821..7402015Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7401822..7402015 -
1695739726.3147671-UTR-S-ischiensis_contig1:7401821..74020151695739726.3147671-UTR-S-ischiensis_contig1:7401821..7402015Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7401822..7402015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1070.1

>prot_S-ischiensis_contig1.1070.1 ID=prot_S-ischiensis_contig1.1070.1|Name=mRNA_S-ischiensis_contig1.1070.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=151bp
MSTRTSQTTFSLGEGPAPPTPGKKMVWNRRKQVWVEVAEAPAPVEDEAPK
GPVVVSSNAYANGSNQNSGNFLGDRPMTRVHAPPGGASTFSFGMGMDNEQ
SVPKTPAPPASAMAEALTQPATPESEQTVPSEAPMTTPTKSTAADKEGEE
E
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mRNA from alignment at S-ischiensis_contig1:7401206..7402015-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1070.1 ID=mRNA_S-ischiensis_contig1.1070.1|Name=mRNA_S-ischiensis_contig1.1070.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=810bp|location=Sequence derived from alignment at S-ischiensis_contig1:7401206..7402015- (Schizocladia ischiensis KU_0333)
TTCGTGCCTTCGCGCCCTGATCTCGCATTCACAGCTCGGCGTCCCACCCA
GTCTTGATTGCAAGCAGGGACTGACGGCGAAAGTGCGTACTCTACCTCGA
CACGTGTTGCAAACCCAAAGCGAGCGATTGCCTCGCCCAGGTAGAGGGAT
ATTCCGTCCGCGGCCGTTGGGCGCGAATCACAAATCCGTACACAATGAGC
ACCCGCACGTCCCAGACAACGTTCTCTCTGGGGGAGGGGCCGGCACCGCC
GACTCCAGGGAAGAAGATGGGTGAGTGCCAGCGTGCAGTGCGATTCGGAG
CGCGAGAACGTAGGGGGCTTGGCTGGGCTAGTGAGCCGAGATCTGGGACA
CCGCACGCTGATGGGGTCCCCACTCCGCCCACCCGTTATCAATTAATTCA
CACCCCCCAAATCCCCTTGCCTGCTGCTTGCAGTGTGGAACAGGAGGAAG
CAAGTGTGGGTGGAGGTGGCCGAAGCCCCGGCGCCTGTTGAGGATGAGGC
ACCCAAGGGCCCTGTGGTGGTGTCCTCCAACGCGTATGCAAACGGATCAA
ACCAGAACAGCGGGAACTTCTTGGGGGACAGGCCGATGACCCGCGTGCAC
GCGCCACCCGGTGGCGCGTCCACGTTCTCCTTTGGCATGGGCATGGATAA
CGAGCAGTCAGTGCCCAAGACGCCGGCCCCCCCTGCATCGGCCATGGCTG
AGGCCCTCACGCAGCCCGCGACGCCCGAGTCGGAGCAGACTGTGCCTTCT
GAGGCCCCCATGACCACGCCCACCAAGAGCACGGCTGCGGACAAGGAGGG
AGAGGAGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7401206..7402015-

>mRNA_S-ischiensis_contig1.1070.1 ID=mRNA_S-ischiensis_contig1.1070.1|Name=mRNA_S-ischiensis_contig1.1070.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=906bp|location=Sequence derived from alignment at S-ischiensis_contig1:7401206..7402015- (Schizocladia ischiensis KU_0333)
ATGAGCACCCGCACGTCCCAGACAACGTTCTCTCTGGGGGAGGGGCCGGC
ACCGCCGACTCCAGGGAAGAAGATGGATGAGCACCCGCACGTCCCAGACA
ACGTTCTCTCTGGGGGAGGGGCCGGCACCGCCGACTCCAGGGAAGAAGAT
GGTGTGGAACAGGAGGAAGCAAGTGTGGGTGGAGGTGGCCGAAGCCCCGG
CGCCTGTTGAGGATGAGGCACCCAAGGGCCCTGTGGTGGTGTCCTCCAAC
GCGTATGCAAACGGATCAAACCAGAACAGCGGGAACTTCTTGGGGGACAG
GCCGATGACCCGCGTGCACGCGCCACCCGGTGGCGCGTCCACGTTCTCCT
TTGGCATGGGCATGGATAACGAGCAGTCAGTGCCCAAGACGCCGGCCCCC
CCTGCATCGGCCATGGCTGAGGCCCTCACGCAGCCCGCGACGCCCGAGTC
GGAGCAGACTGTGCCTTCTGAGGCCCCCATGACCACGCCCACCAAGAGCA
CGGCTGCGGACAAGGAGGGAGAGGAGGAGTGTGGAACAGGAGGAAGCAAG
TGTGGGTGGAGGTGGCCGAAGCCCCGGCGCCTGTTGAGGATGAGGCACCC
AAGGGCCCTGTGGTGGTGTCCTCCAACGCGTATGCAAACGGATCAAACCA
GAACAGCGGGAACTTCTTGGGGGACAGGCCGATGACCCGCGTGCACGCGC
CACCCGGTGGCGCGTCCACGTTCTCCTTTGGCATGGGCATGGATAACGAG
CAGTCAGTGCCCAAGACGCCGGCCCCCCCTGCATCGGCCATGGCTGAGGC
CCTCACGCAGCCCGCGACGCCCGAGTCGGAGCAGACTGTGCCTTCTGAGG
CCCCCATGACCACGCCCACCAAGAGCACGGCTGCGGACAAGGAGGGAGAG
GAGGAG
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