mRNA_S-ischiensis_contig1.1001.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1001.1
Unique NamemRNA_S-ischiensis_contig1.1001.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1001.1 vs. uniprot
Match: D7FMM9_ECTSI (Similar to ATP synthase mitochondrial F1 complex assembly factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM9_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 1.090e-108
Identity = 169/268 (63.06%), Postives = 207/268 (77.24%), Query Frame = 1 
Query:  196 RHLSSVPEVTHQRIKGRSRFYKTVSVQP-----------AAGVDG----LWEVVLDSRVLKTPARKPLQFDSFELAMAVATEWDAQTGGRGIEPATMPLMALASTAIDQIMPDAKPTVETCLKYLPTDTVCYLTPEADPELVRGQRKLWAPLREWSDKELGVRMETTDSIFQRPAHPTASLVRAREVVEALDAWTLAALQSVTMECKSLVIGLGLVLRHITADQAFDAARLEEETNVERWGMVEGGHDLDRSNTNLTLAAASTLLWLR 954
            R +SS PE+THQRIKGRSRFYKTV+++            AA   G     WE++LDSRVLKTP R+PLQFDS ELAMAVA EWDAQ   +GIEPA MPLMALASTA+DQ+  D + TV TCLKYLPTDTVC+L+P+ DP + R QR+LW+PLR+W+++ LG+ + TT  I + P HP  +L RAR+++E+LD W LAA+QS TMECKSLVI L L+ R  T ++AFDAARLEEE NVERWGM+EGGHD+DR+NT LTL AASTL+WLR
Sbjct:   74 REMSSAPELTHQRIKGRSRFYKTVTIREIVADKAGDEASAAAAVGDKSPRWEILLDSRVLKTPGRRPLQFDSPELAMAVAAEWDAQDTSKGIEPAVMPLMALASTALDQVASDREKTVATCLKYLPTDTVCFLSPDPDPVIARRQRQLWSPLRDWTEEALGIPVATTTEIHRTPQHPPEALARARDLLESLDEWGLAAVQSATMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRANTTLTLTAASTLIWLR 341
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BLAST of mRNA_S-ischiensis_contig1.1001.1 vs. uniprot
Match: A0A835YM22_9STRA (ATP synthase-like protein mitochondrial F1 complex assembly factor 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM22_9STRA)

HSP 1 Score: 265 bits (678), Expect = 2.150e-80
Identity = 137/273 (50.18%), Postives = 177/273 (64.84%), Query Frame = 1 
Query:  160 GPRPGPHRAEVA----RHLSSVPEVTHQRIKGRSRFYKTVSVQPAAGVDGL---WEVVLDSRVLKTPARKPLQFDSFELAMAVATEWDAQTGGRGIEPATMPLMALASTAIDQIMPDAKPTVETCLKYLPTDTVCYLTPEADPELVRGQRKLWAPLREWSDKELGVRMETTDSIFQRPAHPTASLVRAREVVEALDAWTLAALQSVTMECKSLVIGLGLVLRHITADQAFDAARLEEETNVERWGMVEGGHDLDRSNTNLTLAAASTLLWLRR 957
            GP    H A++     R   SV +  HQ+IKGR RFYK VSV      D     W+V+LD+R L+TPAR+PL F +  LA AVA EWDAQT   GIEPA MPLM L +TA+DQ+  + +PT++  + YL TDTVC+  P+ D  +++ Q+K W PL  W+ K LG  +  T     RP HP   + +AR +V  LD + L+A+Q +TMECKSLV+ L +  R IT +QAFDAARLEE  N+E WG+VEGGHDLD  +T L L+AAS LLWL R
Sbjct:   27 GPWQQQHAADLPLRCQRRNMSVQDTVHQKIKGRRRFYKIVSVDQVKASDSSGPQWQVLLDNRPLRTPARRPLHFPTEALARAVAAEWDAQTRSTGIEPAVMPLMTLCATALDQVAVNPEPTIDNVMNYLHTDTVCFFAPDDDRIILKRQKKTWGPLHTWASKALGGELVKTQHAIARPQHPPEVVDQARAIVAGLDPFALSAVQCITMECKSLVVALAVAYRQITMEQAFDAARLEEGFNIEHWGLVEGGHDLDICSTKLQLSAASMLLWLTR 299
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BLAST of mRNA_S-ischiensis_contig1.1001.1 vs. uniprot
Match: A0A7S3HNX9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNX9_9STRA)

HSP 1 Score: 226 bits (577), Expect = 8.940e-66
Identity = 117/251 (46.61%), Postives = 162/251 (64.54%), Query Frame = 1 
Query:  199 HLSSVPEVTHQRIKGRSRFYKTVSVQPAA-GVDGLWEVVLDSRVLKTPARKPLQFDSFELAMAVATEWDAQTGGR-GIEPATMPLMALASTAIDQIMPDAKPTVETCLKYLPTDTVCYLTPEADPELVRGQRKLWAPLREWSDKELGVRMETTDSIFQRPAHPTASLVRAREVVEALDAWTLAALQSVTMECKSLVIGLGLVLRHITADQAFDAARLEEETNVERWGMVEGGHDLDRSNTNLTLAAASTLL 945
            H S VP V HQ I GR+RFYK V V P   G  G + + LD RVLKTP R PL   +  LAM++A EWDAQT  R GI+P  MP+M++ASTAIDQI  D    V+TC++YLPTDT  +  P+ D  L   Q+K + P+ EW+ KEL + + T+ S+  R  HP A+  + R ++E +D +TL  +Q  T+ECKS+++ L  + R I  ++A  A+R+EEE  VE WG+VEGGHD+DR N  + L++  T +
Sbjct:   21 HFSQVPAV-HQSISGRTRFYKKVDVIPTPDGKAGQYSITLDGRVLKTPGRNPLILPNLNLAMSIAAEWDAQTNKRMGIQPVNMPMMSIASTAIDQIQVDRTHAVDTCMRYLPTDTALFHAPDYDRILQAQQKKHFLPVLEWAQKELDMNLATSQSMAGRIEHPEAAYNKLRSILEKMDYYTLTCVQGATLECKSILLSLAFISRFIDLEKAIAASRIEEEFQVEIWGVVEGGHDMDRLNNAVRLSSVGTFM 270
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BLAST of mRNA_S-ischiensis_contig1.1001.1 vs. uniprot
Match: A0A6V1NN32_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NN32_HETAK)

HSP 1 Score: 221 bits (564), Expect = 7.130e-64
Identity = 118/243 (48.56%), Postives = 155/243 (63.79%), Query Frame = 1 
Query:  226 HQRIKGRSRFYKTVSVQPAAGVDGLWEVVLDSRVLKTPARKPLQFDSFELAMAVATEWDAQTGGRGIEPATMPLMALASTAIDQIMPDAKPTVETCLKYLPTDTVCYLTPEADPELVRGQRKLWAPLREWSDKELGVRMETTDSIFQRPAHPTASLVRAREVVEALDAWTLAALQSVTMECKSLVIGLGLVLRHITADQAFDAARLEEETNVERWGMVEGGHDLDRSNTNLTLAAASTLLWLR 954
            HQ IKGR RFY  VSV+      G +E+ LD R LKTP R  + F + + A+AVA EWD+QT  +GIEP TMPLM L +TAID I  D  PT++  LKY PTDT CY   E +  L + Q KL  P+ E   K  GV + TTD++  +  HP  S+ + +++VE+LD + L+ALQ  TMECKSLV+GL L    IT ++A    R+EEE  +E WG +E GHDLDR  T + L+AAS L+ L+
Sbjct:   45 HQTIKGRKRFYNNVSVKRVES--GKFEIQLDGRSLKTPGRNSMHFPNEQYALAVAAEWDSQTEKKGIEPGTMPLMTLTATAIDHISVDPSPTLDNILKYFPTDTACYFANEEERILRKRQIKLLDPVIEKLSKTFGVDIATTDAMITKVPHPPESISKMKDIVESLDPFALSALQCATMECKSLVLGLSLTSGLITVEEAQACCRIEEEFQIEVWGEIENGHDLDRVGTAVQLSAASVLMQLK 285
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BLAST of mRNA_S-ischiensis_contig1.1001.1 vs. uniprot
Match: A0A7S1XL47_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL47_9STRA)

HSP 1 Score: 211 bits (537), Expect = 6.370e-60
Identity = 117/260 (45.00%), Postives = 159/260 (61.15%), Query Frame = 1 
Query:  208 SVPEVTHQRIKGRSRFYKTVSVQPA-----AGVD------GLWEVVLDSRVLKTPARKPLQFDSFELAMAVATEWDAQTGGRGIEPATMPLMALASTAIDQIMPDAKPTVETCLKYLPTDTVCYLTPEADPELVRGQRKLWAPLREWSDKELGVRMETTDSIFQRPAHPTASLVRAREVVEALDAWTLAALQSVTMECKSLVIGLGLVLRHITADQAFDAARLEEETNVERWGMVEGGHDLDRSNTNLTLAAASTLLWLR 954
            S P+ THQ IKGR+RFY    V PA     A V       G W+V LD R L TPAR PL   S  LA A+A EWD Q+   GIEP+ MPLM+LASTA+DQI  DA+PT+   L +L TDT C+L P  +  L   Q +++APL  W  +  G  +  ++ I  +P HP  ++      +  +D + LAALQ  T  CKS+V+GL +V   +T ++A  A RLEE+ NVE+WG+VEGGHD+D + +  +L++A+T L LR
Sbjct:   24 SAPQ-THQTIKGRTRFYVRTGVMPAKDEAAAAVXXXXXXXGGWQVTLDGRPLPTPARAPLVLPSEPLAWAIAAEWDNQSTPVGIEPSFMPLMSLASTALDQIAVDAEPTINALLPFLKTDTACFLAPPEERILRARQEEVFAPLLAWVRERYGADLAVSEDIIAKPDHPADAVAALEAAMRGMDCFELAALQCATFNCKSMVMGLAVVEHELTPEEAQRACRLEEDFNVEQWGLVEGGHDVDMAASLASLSSATTFLRLR 282
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BLAST of mRNA_S-ischiensis_contig1.1001.1 vs. uniprot
Match: A0A7S2WTT0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTT0_9STRA)

HSP 1 Score: 204 bits (520), Expect = 2.520e-57
Identity = 122/256 (47.66%), Postives = 156/256 (60.94%), Query Frame = 1 
Query:  211 VPEVTHQRIKGRSRFYKTVSVQPAAGVDGL-WEVVLDSRVLKTPARKPLQFDSFELAMAVATEWDAQTGGRGIEPATMPLMALASTAIDQIMPDAKPTVETCLKYLPTDTVCYLTPEADP--ELVRGQRKLWAPLREWSDKELGVRMETTDSIFQRPAHPTASLVRAREVVEALDAWTLAALQSVTMECKSLVIGLGLVLRHITADQAFDAARLEEETNVERWGMVEGGHDLDRSNTNLTLAAASTLLWLRRGGDG 969
            + E  H  IKGR RFYK V+VQ   G     +EV LD R L+TP R+ + FDS ELAMAVA EWDAQ    GIEPATMPLM+L ST +DQ   D    +   LK+LPTDT C+   EA     LVR Q K +  L +W   + GV + TT+ I  +  H   ++ R   +++ALD   L A+Q  TME KS+V+ L LVLR +T   A + ARLEEE  +E+WG+VEGGHDLDR+ + +  A+ S  L L  G DG
Sbjct:   29 IREKVHPTIKGRRRFYKQVAVQALDGSGATKYEVQLDGRSLRTPGRRAMHFDSQELAMAVALEWDAQAP-EGIEPATMPLMSLMSTWLDQTSQDRPTVITGALKFLPTDTCCFFNEEAPATRNLVRRQEKHFFKLLDWLADDWGVELSTTNGIT-KVKHEDEAVRRVEAMLDALDDAALTAVQCATMEGKSVVLALALVLRRVTPKAAEEIARLEEEFQMEQWGLVEGGHDLDRAASKVQFASTSAFLRLLDGEDG 282
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BLAST of mRNA_S-ischiensis_contig1.1001.1 vs. uniprot
Match: A0A485KYK3_9STRA (Aste57867_13634 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYK3_9STRA)

HSP 1 Score: 198 bits (503), Expect = 4.570e-55
Identity = 107/241 (44.40%), Postives = 152/241 (63.07%), Query Frame = 1 
Query:  232 RIKGRSRFYKTVSVQPAAGVDGLWEVVLDSRVLKTPARKPLQFDSFELAMAVATEWDAQTGGRGIEPATMPLMALASTAIDQIMPDAKPTVETCLKYLPTDTVCY-LTPEADPELVRGQRKLWAPLREWSDKELGVRMETTDSIFQRPAHPTASLVRAREVVEALDAWTLAALQSVTMECKSLVIGLGLVLRHITADQAFDAARLEEETNVERWGMVEGGHDLDRSNTNLTLAAASTLLWL 951
            +I GRSRFYK V ++P    DG + V LD + ++TP+R  LQ  +  LA  VA EWDAQ     I+P TMP+M LAST++D    D +  +E  +KYL TDT+C+ +  +   +L   Q K WAPLR+W +KE G  ++       R  H  A++ R R ++++LD + L A + +  ECKS+V+ L L+ RHITA +A +  RLEEE  +ERWG+VEGGHDLDR N ++ + +AS  LWL
Sbjct:   43 KIAGRSRFYKVVGIEPEG--DG-YCVTLDGKKVRTPSRSLLQLPTKALASVVAMEWDAQR--ETIQPTTMPMMTLASTSLDHW--DTEFIMEELMKYLQTDTICFPVESQHQEKLASRQEKKWAPLRKWFEKEFGGELDVNHGTISRLEHDVAAVNRVRALLDSLDPFELMAFRLIVRECKSMVVALALMKRHITAKEAIELGRLEEEFQIERWGLVEGGHDLDRVNCSVNVHSASFFLWL 276
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BLAST of mRNA_S-ischiensis_contig1.1001.1 vs. uniprot
Match: A0A482S1E3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1E3_9ARCH)

HSP 1 Score: 197 bits (500), Expect = 2.150e-54
Identity = 113/245 (46.12%), Postives = 148/245 (60.41%), Query Frame = 1 
Query:  220 VTHQRIKGRSRFYKTVSVQPAAGVDGLWEVVLDSRVLKTPARKPLQFDSFELAMAVATEWDAQTGGR-GIEPATMPLMALASTAIDQIMPDAKPTVETCLKYLPTDTVCYLTPEADPELVRGQRKLWAPLREWSDKELGVRMETTDSIFQRPAHPTASLVRAREVVEALDAWTLAALQSVTMECKSLVIGLGLVLRHITADQAFDAARLEEETNVERWGMVEGGHDLDRSNTNLTLAAASTLLWL 951
            +THQ   GR RFYK V V+  A  +  + + LD R L+TPAR  L   +F LA+A+A EWDAQT  R GIEP TMPLM LASTAIDQI P  + T+ET L Y+PTD+  Y T E D  L   Q+    P+    +  L +R+ TT  + Q+ +HP     +    +  LD +TLAA+QS   E KSLV+ L LV +  +  +   A+RLEEE   E WG+VEGGHD+DR N ++ L+AA T   L
Sbjct:   48 LTHQGFAGRKRFYKHVGVKKIA--ENKFGIELDGRTLRTPARNNLHLPTFSLALAIAAEWDAQTDQRKGIEPVTMPLMTLASTAIDQIAPHPEGTIETVLSYMPTDSALYFTTEQDRYLYNKQQTHLLPILSKFNDALQIRVATTQDMSQKISHPVGVQEKIAFFLSKLDCFTLAAVQSAVKESKSLVLSLSLVGKLASLQEVVLASRLEEEVQCEIWGVVEGGHDMDRLNNSVGLSAAHTFTEL 290
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BLAST of mRNA_S-ischiensis_contig1.1001.1 vs. uniprot
Match: A0A6G0XTA7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTA7_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.830e-52
Identity = 104/241 (43.15%), Postives = 151/241 (62.66%), Query Frame = 1 
Query:  232 RIKGRSRFYKTVSVQPAAGVDGLWEVVLDSRVLKTPARKPLQFDSFELAMAVATEWDAQTGGRGIEPATMPLMALASTAIDQIMPDAKPTVETCLKYLPTDTVCY-LTPEADPELVRGQRKLWAPLREWSDKELGVRMETTDSIFQRPAHPTASLVRAREVVEALDAWTLAALQSVTMECKSLVIGLGLVLRHITADQAFDAARLEEETNVERWGMVEGGHDLDRSNTNLTLAAASTLLWL 951
            +I GRSRFYK V ++P    +G   V LD + ++TPAR  LQ  +  LA AVA EWDAQ     I+P+TMP+MALASTA+D    D     +  +KYL TDT+C+ +  +   +L   Q K WAPLR+W + E G  ++       +  H   ++ +  E ++++D + L A + +  ECKS+V+ L L+ RHITA +A +  RLEEE  +ERWG+VEGGHDLDR+N ++++ +AS  LWL
Sbjct:   47 KIAGRSRFYKVVGIEPEG--EGFC-VTLDGKRVRTPARSLLQLPTKSLAAAVAMEWDAQR--ETIQPSTMPMMALASTALDHW--DFDFIHQELMKYLQTDTICFPVESQHQEKLAARQEKKWAPLRKWFETEFGGELDVNHGSISKLQHDAQAVEKVGEFLQSIDHFELMAFRLIVRECKSMVVALALMKRHITAKEAIELGRLEEEFQIERWGLVEGGHDLDRANCSVSVHSASFFLWL 280
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BLAST of mRNA_S-ischiensis_contig1.1001.1 vs. uniprot
Match: A0A024TVQ1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TVQ1_9STRA)

HSP 1 Score: 185 bits (469), Expect = 3.040e-50
Identity = 103/241 (42.74%), Postives = 146/241 (60.58%), Query Frame = 1 
Query:  232 RIKGRSRFYKTVSVQPAAGVDGLWEVVLDSRVLKTPARKPLQFDSFELAMAVATEWDAQTGGRGIEPATMPLMALASTAIDQIMPDAKPTVETCLKYLPTDTVCY-LTPEADPELVRGQRKLWAPLREWSDKELGVRMETTDSIFQRPAHPTASLVRAREVVEALDAWTLAALQSVTMECKSLVIGLGLVLRHITADQAFDAARLEEETNVERWGMVEGGHDLDRSNTNLTLAAASTLLWL 951
            +I GRSRFYK V ++  A  DG + + LD + ++TP+R  LQ  +  LA AVA EWDAQ     I+P TMP+M LASTA+D    D    +E  +KYL TDT+C+ +  +   +L   Q K W PLR+W + E G  ++       +  H   ++   R  V ++D + L A + +  ECKS+V+ L L+ RHITA +A +  RLEEE  +ERWG+VEGGHDLDR N ++ + +AS  LWL
Sbjct:   38 KIAGRSRFYKAVGIE--AEGDG-YCITLDGKKVRTPSRSLLQLPTKSLAAAVAKEWDAQH--ETIQPTTMPIMTLASTALDHW--DFDFIIEEIMKYLQTDTICFPVESQHQEKLAARQEKKWQPLRKWFETEFGGELDINYGTINKLEHSPVAVENVRAFVYSMDKFELMAFRLIVRECKSMVVALALLKRHITAKEAIELGRLEEEYQIERWGLVEGGHDLDRVNCSVNVHSASFFLWL 271
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMM9_ECTSI1.090e-10863.06Similar to ATP synthase mitochondrial F1 complex a... [more]
A0A835YM22_9STRA2.150e-8050.18ATP synthase-like protein mitochondrial F1 complex... [more]
A0A7S3HNX9_9STRA8.940e-6646.61Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6V1NN32_HETAK7.130e-6448.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1XL47_9STRA6.370e-6045.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WTT0_9STRA2.520e-5747.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485KYK3_9STRA4.570e-5544.40Aste57867_13634 protein n=1 Tax=Aphanomyces stella... [more]
A0A482S1E3_9ARCH2.150e-5446.12Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6G0XTA7_9STRA2.830e-5243.15Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TVQ1_9STRA3.040e-5042.74Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:6933941..6939094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score341.3
Seed ortholog evalue4.9e-91
Seed eggNOG ortholog2880.D7FMM9
KEGG koko:K07556
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0008150,GO:0009987,GO:0016043,GO:0016604,GO:0016607,GO:0022607,GO:0031974,GO:0031981,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043461,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0065003,GO:0070013,GO:0070071,GO:0071840
EggNOG free text desc.proton-transporting ATP synthase complex assembly
EggNOG OGsCOG5387@1,KOG3015@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionsimilar to ATP synthase mitochondrial F1 complex assembly factor 2
Ec32 orthologEc-23_000930.1
Exons6
Model size1884
Cds size954
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1001.1prot_S-ischiensis_contig1.1001.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 6934820..6939043 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.0313244-UTR-S-ischiensis_contig1:6933940..69348191622815475.0313244-UTR-S-ischiensis_contig1:6933940..6934819Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6933941..6934819 -
1695739722.8796477-UTR-S-ischiensis_contig1:6933940..69348191695739722.8796477-UTR-S-ischiensis_contig1:6933940..6934819Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6933941..6934819 -
1622815475.1222339-UTR-S-ischiensis_contig1:6939043..69390941622815475.1222339-UTR-S-ischiensis_contig1:6939043..6939094Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6939044..6939094 -
1695739722.9674084-UTR-S-ischiensis_contig1:6939043..69390941695739722.9674084-UTR-S-ischiensis_contig1:6939043..6939094Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6939044..6939094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.0461056-CDS-S-ischiensis_contig1:6934819..69350021622815475.0461056-CDS-S-ischiensis_contig1:6934819..6935002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6934820..6935002 -
1695739722.890631-CDS-S-ischiensis_contig1:6934819..69350021695739722.890631-CDS-S-ischiensis_contig1:6934819..6935002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6934820..6935002 -
1622815475.056674-CDS-S-ischiensis_contig1:6936050..69362481622815475.056674-CDS-S-ischiensis_contig1:6936050..6936248Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6936051..6936248 -
1695739722.907941-CDS-S-ischiensis_contig1:6936050..69362481695739722.907941-CDS-S-ischiensis_contig1:6936050..6936248Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6936051..6936248 -
1622815475.0680914-CDS-S-ischiensis_contig1:6936602..69366841622815475.0680914-CDS-S-ischiensis_contig1:6936602..6936684Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6936603..6936684 -
1695739722.927475-CDS-S-ischiensis_contig1:6936602..69366841695739722.927475-CDS-S-ischiensis_contig1:6936602..6936684Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6936603..6936684 -
1622815475.0829737-CDS-S-ischiensis_contig1:6937382..69374471622815475.0829737-CDS-S-ischiensis_contig1:6937382..6937447Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6937383..6937447 -
1695739722.936933-CDS-S-ischiensis_contig1:6937382..69374471695739722.936933-CDS-S-ischiensis_contig1:6937382..6937447Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6937383..6937447 -
1622815475.0970457-CDS-S-ischiensis_contig1:6938260..69383801622815475.0970457-CDS-S-ischiensis_contig1:6938260..6938380Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6938261..6938380 -
1695739722.9453945-CDS-S-ischiensis_contig1:6938260..69383801695739722.9453945-CDS-S-ischiensis_contig1:6938260..6938380Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6938261..6938380 -
1622815475.1108537-CDS-S-ischiensis_contig1:6938737..69390431622815475.1108537-CDS-S-ischiensis_contig1:6938737..6939043Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6938738..6939043 -
1695739722.9536655-CDS-S-ischiensis_contig1:6938737..69390431695739722.9536655-CDS-S-ischiensis_contig1:6938737..6939043Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6938738..6939043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1001.1

>prot_S-ischiensis_contig1.1001.1 ID=prot_S-ischiensis_contig1.1001.1|Name=mRNA_S-ischiensis_contig1.1001.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=318bp
MQVAPALRAAGKILRRRLGPPAATGWRDICTDPRRRGPRPGPHRAEVARH
LSSVPEVTHQRIKGRSRFYKTVSVQPAAGVDGLWEVVLDSRVLKTPARKP
LQFDSFELAMAVATEWDAQTGGRGIEPATMPLMALASTAIDQIMPDAKPT
VETCLKYLPTDTVCYLTPEADPELVRGQRKLWAPLREWSDKELGVRMETT
DSIFQRPAHPTASLVRAREVVEALDAWTLAALQSVTMECKSLVIGLGLVL
RHITADQAFDAARLEEETNVERWGMVEGGHDLDRSNTNLTLAAASTLLWL
RRGGDGATPVKLPPRQT*
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mRNA from alignment at S-ischiensis_contig1:6933941..6939094-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1001.1 ID=mRNA_S-ischiensis_contig1.1001.1|Name=mRNA_S-ischiensis_contig1.1001.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5154bp|location=Sequence derived from alignment at S-ischiensis_contig1:6933941..6939094- (Schizocladia ischiensis KU_0333)
ACTTGCAGCGCTTGCCGGCGGTTGGGCGAAGAGTGCGGTACACGATTGGG
CATGCAGGTAGCCCCGGCTCTTCGGGCGGCGGGGAAGATATTACGTCGGC
GCTTGGGACCCCCCGCGGCCACGGGCTGGCGCGACATATGCACGGACCCC
CGGCGGCGCGGGCCTCGGCCAGGCCCTCATCGAGCGGAGGTTGCGAGACA
CCTCTCCTCCGTGCCCGAAGTCACCCACCAGCGGATCAAGGGTCGCTCCC
GCTTCTACAAAACAGTGTCTGTCCAGCCAGCCGCTGGAGTCGATGGTTTA
TGGGAGGTTGTCCTGGACTCGCGTGTGCTTAAGACTCCCGCTCGCAAGCC
CCTCCAGGTAAGTGAAAACACGTGTGTGCTGGGTGCGACAAGGGGCCTCA
CGAGCAAGGGGCTACCCGTGGAAGAGCGAGATTGCAAGTAGTGCGGCTTG
TCAATACAGTACTACTGGTGCGTGCTTTTGCAGGAACAGGGTGGGCAGAT
GACGCAGGGGTGGACAAATGCTGTGTGCGCGCATGAACACACAGCACATT
GAGCACCTACCAGTACAAACGTGTTTGCAGAGCTTTTTTTCCAAGGATGC
CATTCGGGTGTGAAAGGCGTGGCATTAGGGGGGCTCTGAAGCGCATGAGG
CCAACAGCGAAGCATGGGCTGACCCCCCGTCACCCGCACACGCTCTGCTG
CCATCGATGCGTAGTTTGACAGCTTTGAGCTGGCCATGGCCGTGGCCACG
GAATGGGATGCACAGACGGGGGGTCGCGGAATTGAGCCCGCCACCATGCC
ACTGATGGCCCTTGCGTCCACCGCAATAGACCAGGTGAGCTGCCCTGGGG
CTCTCCGCTCCAGCCTGGGCGCACCAACATCAATTGCCTTTAGTGCAGTT
TTTGGGGCCTTGCCATCCCCCGTCCGTCTGCGTGGTACAACTCTGCCCCG
CTATGAGCCTCCACCCCCCATCGCGACTGACTATGCAGTATTGTATTAGC
ATGAGCTGGGTGAACAAGTGTTCAGTCCAGACTAGCTGTGAGTGTTTATC
CCTCACTGCGTTGTTTGCTTATCGCATGGAGGCGGGCGGGGGATTGCTCC
AAACTCGGAAGATGTCGCGTGGCCAGTGGTGTCTGCGCTGCTTTCGGCAA
CGAAGCACCTTCTATAGCTTGGAAGTGCAATGCTTTGCATGTAGCTTACG
CGCGAACTGCGTCTTTTGACGGAGCCGTGGTGTGCATGGCCAGAAACCAT
ACTACCGAAGTACAGTGAATGCAATTATTCTTGGGCAAGGCTGAGTCCGA
ACTCGCCAGCCATGCTTTATATTATGTCCAGTGCAGTGTGAGTACATGTA
CTGTATGCATACATCAAAACGTGCAGTATGTATACTGCACGTATATGTAC
GGCCGAGGCGCGTGGTCAATGGTCTCGGGGCTACGGCGAGCACAACATGA
GTACCAGTATATATATATGTACTCACGTGGTGCTTGCCACATACATACAT
ATATGTGTGTATATACTTCGAAGTATATATGTACTCACGTGGTGCTTATT
GTAGTCCCGAGACCATATATATATATATGTATATATATAGGAAGTATATC
TAATCCTTGCACCCCGGTCACCGGCCACCGCCTCCCTCTCGGGCCAGATA
ATGCCGGACGCCAAGCCGACGGTGGAGACATGCCTCAAGTACCTGCCTAC
CGACACCGTGTGGTGAGGAGGAGCGCGCGGGTGTCGATCGGGCACCAGAG
GCATGGACTCTGTTTAGCTTGTTTGTTGCTGCTTCCAGTCAATTACGGCA
GTGTGGATGTGACGCATGTCCGTCTCTCCCATGACTGGGGTTGTGTACGC
CTCAAGTGCCGCGGCCTGGCGCGTCCGTGTGGCGGGGGGCGAGGGTTTTG
CTCTTGTTGTGGTGGTGGCGGCGACGCAGTGCCCCAAGCTGTGGCGTATG
GGTCCCCTGACTATCGATCGTTCATCTCACTTGGGGTTGCGGTACCAGCA
CAGGCACTCGATGTGGCCTTGGGACTACGGCAAGCACACCCTGAGCACAT
ATATGATCACTGGAGTACTGGAGTACTCAGTACACACATGTGCTCTGCGC
GCTGCAAGTAGCAGTGCGGGGGTGAGGGGCATACGTGCTTCTGCAAGCGT
GGGGAATCTGAACCACCATAGGATATGTGGCAGTACAGGGACGCTGGCAA
AAGCTGCCGTTTCCCCTTGCGGGGGCAACCGGAATCCAGTACCGCCTGCA
GCCGTGGTGCGAACGAGGAATGTAAACGTGTTTGCCTCCACGGGGAGGGA
AATGCACTCATGTCCTCGCCCGCCGCCCGGCCCGTCTCCGTCACCACCGC
CCCTTCCCATTCCCTCCGTCCCGTGCTGCCGGGCTGGTGCTCACTGGCCC
ACCCTGGCAGCTACCTGACACCGGAAGCAGACCCAGAGTTGGTGAGGGGC
CAGCGGAAGCTTTGGGCGCCCTTGCGGGAGTGGAGCGACAAGGTGTGTGT
CCCCGATTTAGGCTCTCCCCCTGCACCTGGACACGATATCCCCCAAGTCT
CTTTTGTGACTACTACATACGAAGTAGTAGGTATGCAAGACTGCAGGACG
GTTTTGCGCAGAAGATACGTAGCAAGCGAGCGGGAAAGAGACGTGTCCTT
ACTCGCACGTCTCGCTTGCCCGCGGATTTCCGCACTCGCTTGGGCGTGCT
GTGCATCGTTTCACGTGCCGCCATCCTCCCAAGGGTGAGCCAGCGATTCG
CACGCGGCGCGCGGCAAAGGCTTTCGCTCAAAGACCGACTCGGCCACTGT
ACTTACCCGCTCTAGACGTGGTACCGCTTGCCCTGCCGGCCCCAAGGAGC
TGGGCGTCCGCATGGAGACCACGGACAGCATCTTCCAGCGGCCCGCGCAC
CCCACGGCGTCGCTGGTGCGCGCGCGGGAGGTGGTGGAGGCGCTGGACGC
GTGGACGCTGGCCGCCCTTCAGAGCGTGACCATGGAGTGCAAGTCCCTGG
TCATCGGCCTGGGATTGGTGCTCCGCCACATCACTGCGGACCAGGTGGGG
GGTGCGGTGGGTGGGAGTGGTGGCGTTGGTTTGGGGGTCGGCAGGGGGAG
GCGGGCGTGCGTGTGCGCGTGTGCGCAAGGCGGGCGAGCAGGTGGCCTTT
TCTTGGCGGCACCTCATGTGCCCGGCTGCTGCAGGATACTTGGAAGTACT
ACTGTACAGAGTAGTGGGAGCCCCTTGAAGCGTAGACGGCTTTCACGCAA
GGTGGAGGGCTGCCGCTGCCCCCCCCCCCCCTTAGCACCCTGGCTCAACC
GGGGGCAGGAAGGGGCCTGCTCTGCCTCGGTCGACAGTTATGGTTCATGG
TCTCGGGACTATGGCAAGCGCAACGTGAGCAATTGGGTACTTTGAAGATC
TCATACTGTTCCGAGGAGGGAGGGGGCCTGCTCCGTCTCGGTCGACGCGC
GTGGTTCAATGGTCTCGTGACTATGGCAAGCAAAACGCGCGTAGTCGAGT
ACTCAACTACTTCCAAACCCGGTCATGGGCCTCGGTACCGCAGCAAGCAC
AGCGGGCATGCATATGCACTTACAAGTGTCTTCCAAGCCTGCTTCCGAGC
GTGTACTAGTATTGTGTAGTACAGTACATGTACGGTGCTTTGAAGGAGTG
CCTCGAGCGCTGTACGAGAGTACTTCCTGGCCAAGTGTTCTGAGTGTACT
CGTACAGTACTTGCAGTGTGTGAGTCGGAAGACGTGGACTATCCTCTTCC
TTGGCTCCAGAAGTACCCGGCGCACGTTGCTCCGACGTCGATGTGTGCCG
AGTACTGGGCGCTTGCTGTGCTACGTACGGTCGTGCAGTGCATGCACTCG
CGCTCGTGTTGCTCGGCAGTGTACAGTGGTGTACAGTATACTACACGTGT
ATGTTGTATTTTTCGCAGTGCACTACTAGTACTATGGGGCATGCCGGTAT
ATTCATGTTCCAGCACGTGTGTGTGCGTGCATACGGATGAACACCGCACA
TGCTGGAGATGTAGGAACCAGCGCCCCGAGAAACACACACGCCAACATTG
CTTCGCAACATGTATTGCCTTCACCTCCTGTGCACTGAACAGGCGTTTGA
TGCGGCCCGGCTGGAGGAGGAGACAAACGTAGAGAGATGGGGCATGGTAG
AGGGCGGCCATGACCTCGACCGCTCCAATACCAACCTCACCCTGGCTGCT
GCGTCCACGCTGCTGTGGCTGCGGCGGGGTGGAGACGGGGCCACGCCAGT
CAAACTGCCACCACGGCAAACCTAAGGTGGCAATGCGGACAGCAGCACTG
GCGCTCACTGACAGGCTGCTGAAACTTGCAAAAGTAGCCAACTGGAACTG
GCACAACTTTTGGGGAGCCTGAGGGCCAGGTGCGTATGTGGCCGGCCCCC
GGCCCCGTTGCCGGCGCCCGTGCCCGCCACAATGGGATGCGAAGTGCCAC
AGTAGCCATGCACGGAACAAGGGTTATTGTCGCGGTACTTGCAGGAGCAG
CGGACCCCTGCTGCCCCATTGCCGGCGCCGCCGCCGCCGCCACAATGGGA
TGCGAAGTGCCACGGGTAGCCATGCACGGAACAAGGGTTATTGTCGTGGT
ACTTGTGGTGTCTCATCTCCACCCCACCACCCGGAGTGGAGAGGAGAAGG
AGGAGTGGCAGCAGGGGTCCGCTAGCCCTACCGCGACAACCCCGAGCGGA
GGGGAGGAGGAGGAGGAGGAGTGGCAGCTGCCCCTACGGTGACAATTACC
CTTATTCCGTGCATGGATACCCGTGGCACTTTGCTAAGTTATTGTGGCGG
TGGCGGCGACAATGGGGCCGGCGGCCGAGCCACATGTCCCGTGCCGTGGA
TGTGACTCTGTTTGTTTTGGGAGGCCCGGACCCTCAAGGCTGCCGCCGCA
ATCTCCGCGGTGCCCACTGAACGTGGGGCTGTTTCTTCAACTGCTTCGAA
TTGTTGCTGCCGTGTTTATGGGCTGTGCGTGCACTGGCACACGAAGTTCA
GTAAGTGTCCTCGAGTACGAGTACGGCACATGCTTGCGGGTACTTATGAC
CAGGTTTTAACACTGTACTTGTGAGCAGAATTAAAAGGGTGACCCCGTTC
GCGGCCATCACGTGCCATTTGAAGTCATTGGGCTTGCTCAGCGGCTCTTG
CCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:6933941..6939094-

>mRNA_S-ischiensis_contig1.1001.1 ID=mRNA_S-ischiensis_contig1.1001.1|Name=mRNA_S-ischiensis_contig1.1001.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1908bp|location=Sequence derived from alignment at S-ischiensis_contig1:6933941..6939094- (Schizocladia ischiensis KU_0333)
ATGCAGGTAGCCCCGGCTCTTCGGGCGGCGGGGAAGATATTACGTCGGCG
CTTGGGACCCCCCGCGGCCACGGGCTGGCGCGACATATGCACGGACCCCC
GGCGGCGCGGGCCTCGGCCAGGCCCTCATCGAGCGGAGGTTGCGAGACAC
CTCTCCTCCGTGCCCGAAGTCACCCACCAGCGGATCAAGGGTCGCTCCCG
CTTCTACAAAACAGTGTCTGTCCAGCCAGCCGCTGGAGTCGATGGTTTAT
GGGAGGTTGTCCTGGACTCGCGTGTGCTTAAGACTCCCGCTCGCAAGCCC
CTCCAGATGCAGGTAGCCCCGGCTCTTCGGGCGGCGGGGAAGATATTACG
TCGGCGCTTGGGACCCCCCGCGGCCACGGGCTGGCGCGACATATGCACGG
ACCCCCGGCGGCGCGGGCCTCGGCCAGGCCCTCATCGAGCGGAGGTTGCG
AGACACCTCTCCTCCGTGCCCGAAGTCACCCACCAGCGGATCAAGGGTCG
CTCCCGCTTCTACAAAACAGTGTCTGTCCAGCCAGCCGCTGGAGTCGATG
GTTTATGGGAGGTTGTCCTGGACTCGCGTGTGCTTAAGACTCCCGCTCGC
AAGCCCCTCCAGTTTGACAGCTTTGAGCTGGCCATGGCCGTGGCCACGGA
ATGGGATGCACAGACGGGGGGTCGCGGAATTGAGCCCGCCACCATGCCAC
TGATGGCCCTTGCGTCCACCGCAATAGACCAGTTTGACAGCTTTGAGCTG
GCCATGGCCGTGGCCACGGAATGGGATGCACAGACGGGGGGTCGCGGAAT
TGAGCCCGCCACCATGCCACTGATGGCCCTTGCGTCCACCGCAATAGACC
AGATAATGCCGGACGCCAAGCCGACGGTGGAGACATGCCTCAAGTACCTG
CCTACCGACACCGTGTGATAATGCCGGACGCCAAGCCGACGGTGGAGACA
TGCCTCAAGTACCTGCCTACCGACACCGTGTGCTACCTGACACCGGAAGC
AGACCCAGAGTTGGTGAGGGGCCAGCGGAAGCTTTGGGCGCCCTTGCGGG
AGTGGAGCGACAAGCTACCTGACACCGGAAGCAGACCCAGAGTTGGTGAG
GGGCCAGCGGAAGCTTTGGGCGCCCTTGCGGGAGTGGAGCGACAAGGAGC
TGGGCGTCCGCATGGAGACCACGGACAGCATCTTCCAGCGGCCCGCGCAC
CCCACGGCGTCGCTGGTGCGCGCGCGGGAGGTGGTGGAGGCGCTGGACGC
GTGGACGCTGGCCGCCCTTCAGAGCGTGACCATGGAGTGCAAGTCCCTGG
TCATCGGCCTGGGATTGGTGCTCCGCCACATCACTGCGGACCAGGAGCTG
GGCGTCCGCATGGAGACCACGGACAGCATCTTCCAGCGGCCCGCGCACCC
CACGGCGTCGCTGGTGCGCGCGCGGGAGGTGGTGGAGGCGCTGGACGCGT
GGACGCTGGCCGCCCTTCAGAGCGTGACCATGGAGTGCAAGTCCCTGGTC
ATCGGCCTGGGATTGGTGCTCCGCCACATCACTGCGGACCAGGCGTTTGA
TGCGGCCCGGCTGGAGGAGGAGACAAACGTAGAGAGATGGGGCATGGTAG
AGGGCGGCCATGACCTCGACCGCTCCAATACCAACCTCACCCTGGCTGCT
GCGTCCACGCTGCTGTGGCTGCGGCGGGGTGGAGACGGGGCCACGCCAGT
CAAACTGCCACCACGGCAAACCTAAGCGTTTGATGCGGCCCGGCTGGAGG
AGGAGACAAACGTAGAGAGATGGGGCATGGTAGAGGGCGGCCATGACCTC
GACCGCTCCAATACCAACCTCACCCTGGCTGCTGCGTCCACGCTGCTGTG
GCTGCGGCGGGGTGGAGACGGGGCCACGCCAGTCAAACTGCCACCACGGC
AAACCTAA
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