mRNA_S-ischiensis_contig1.206.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.206.1
Unique NamemRNA_S-ischiensis_contig1.206.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.206.1 vs. uniprot
Match: D8LT97_ECTSI (Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT97_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.410e-17
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:   28 GGKGPFCSRCSNTDPLQRPQVILCTACARGFHTFCVGEKAVPFKLTSAQESRHHAAYIKKHL-AGWQCPQCQTQAS 252
            GG  P C+RCSN D   + QVI C+ C++GFHTFCVGEK +P+ L   ++     A++ +H+ A WQC +CQTQAS
Sbjct:   82 GGNEPHCARCSNADAGGQAQVITCSECSQGFHTFCVGEKRIPYALFPPEQRVLRDAFVAEHIGARWQCSKCQTQAS 157
[Close]
BLAST of mRNA_S-ischiensis_contig1.206.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 6.060e-17
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:   28 GGKGPFCSRCSNTDPLQRPQVILCTACARGFHTFCVGEKAVPFKLTSAQESRHHAAYIKKHL-AGWQCPQCQTQAS 252
            GG  P C+RCSN D   + QVI C+ C +GFHTFCVGEK +P+ L   ++     A++ +H+ A WQC +CQTQAS
Sbjct:  610 GGNEPHCARCSNADAGGQAQVITCSECGQGFHTFCVGEKRIPYALFPPEQRVLRDAFVAEHIGARWQCSKCQTQAS 685
[Close]
BLAST of mRNA_S-ischiensis_contig1.206.1 vs. uniprot
Match: A0A7S3XUL3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUL3_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 3.870e-15
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   37 GPFCSRCSNTDPLQRPQVILCTACARGFHTFCVGEKAVPFKLTSAQESRHHAAYIKKHLAGWQCPQCQ 240
            G  C +C     + +PQ+++C  C+   HTFC GEK +PF      E +HHA Y+++H   W+CP C+
Sbjct:   67 GTTCFKCGENGVIDKPQLLVCAQCSTRLHTFCAGEKRIPFGFRDNTERKHHAGYLRRHYRAWRCPDCR 134
[Close]
BLAST of mRNA_S-ischiensis_contig1.206.1 vs. uniprot
Match: A0A7S2SUI1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUI1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.260e-7
Identity = 23/67 (34.33%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   46 CSRCSNTDPLQRPQVILCTACARGFHTFCVGEKAVPFKLTSAQESRHHAAYIKKHLAGWQCPQCQTQ 246
            C+ C   D  QR Q+I C+ C +  HT CVG++ +PFKL++ +E  +   +I K+ + ++C  C  +
Sbjct:  335 CNICHTDDIKQRSQIIKCSVCQKACHTKCVGQRRIPFKLSTMKERLNRDNFIHKYFSDFRCTACDRE 401
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LT97_ECTSI4.410e-1750.00Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JR06_9PHAE6.060e-1750.00FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S3XUL3_HETAK3.870e-1538.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2SUI1_9STRA1.260e-734.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:1335977..1336560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue5.1e-15
Seed eggNOG ortholog2880.D8LT97
KEGG koko:K04512,ko:K05745,ko:K10293,ko:K11238
KEGG Pathwayko04011,ko04310,ko04810,map04011,map04310,map04810
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031254,GO:0031334,GO:0031344,GO:0031345,GO:0032153,GO:0032154,GO:0032155,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034622,GO:0035091,GO:0040011,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051258,GO:0051493,GO:0051495,GO:0051674,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0098590,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1902903,GO:1902905,GO:1904170,GO:1904171
EggNOG free text desc.actin binding
EggNOG OGsKOG1922@1,KOG1922@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815394.4222827-CDS-S-ischiensis_contig1:1335976..13361771622815394.4222827-CDS-S-ischiensis_contig1:1335976..1336177Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1335977..1336177 -
1695739678.4625113-CDS-S-ischiensis_contig1:1335976..13361771695739678.4625113-CDS-S-ischiensis_contig1:1335976..1336177Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1335977..1336177 -
1622815394.436107-CDS-S-ischiensis_contig1:1336473..13365601622815394.436107-CDS-S-ischiensis_contig1:1336473..1336560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1336474..1336560 -
1695739678.4740603-CDS-S-ischiensis_contig1:1336473..13365601695739678.4740603-CDS-S-ischiensis_contig1:1336473..1336560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 1336474..1336560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.206.1prot_S-ischiensis_contig1.206.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 1335977..1336560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.206.1

>prot_S-ischiensis_contig1.206.1 ID=prot_S-ischiensis_contig1.206.1|Name=mRNA_S-ischiensis_contig1.206.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=96bp
VGNASQAFFGGKGPFCSRCSNTDPLQRPQVILCTACARGFHTFCVGEKAV
PFKLTSAQESRHHAAYIKKHLAGWQCPQCQTQASISQAPPAATMAG
back to top

mRNA from alignment at S-ischiensis_contig1:1335977..1336560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.206.1 ID=mRNA_S-ischiensis_contig1.206.1|Name=mRNA_S-ischiensis_contig1.206.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=584bp|location=Sequence derived from alignment at S-ischiensis_contig1:1335977..1336560- (Schizocladia ischiensis KU_0333)
GTGGGCAACGCCTCCCAGGCGTTCTTTGGGGGGAAGGGCCCGTTCTGCTC
GAGGTGTAGCAACACGGACCCGCTGCAGCGGCCACAGGTGACGGTGTTGC
ATGGGGTATGGAATGTCGATGGCTTTGGTAGTTGGGTGCACGCAGTAAGT
GTGTAAGGTCGGCTGCAATCGCGTATCGATGAAGTAGGTACTCCGTATGG
CAATTGGGTGGGATGTAAGAGCTTGCGTCAGTTTTTCTGTGGAGTTATAG
GTCTATTTGTTCCGATTGGTTGACTAGACGGTCATCGCGGATGTGTCCGA
CCGGTAAGGAAGTAGGTTGTGTGGTTCGACACACGCAGTACCTAATCAAT
CGGCCTCCCATGTCTGTCGACACTGCACTGCAGGTGATCCTGTGCACGGC
GTGCGCCCGGGGTTTCCACACCTTCTGCGTTGGCGAGAAGGCCGTGCCGT
TCAAGCTCACCTCCGCGCAGGAGAGCCGCCACCACGCTGCCTACATCAAG
AAGCACCTGGCCGGGTGGCAGTGCCCCCAGTGCCAGACCCAGGCCTCCAT
ATCCCAGGCCCCGCCTGCCGCGACGATGGCTGGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:1335977..1336560-

>mRNA_S-ischiensis_contig1.206.1 ID=mRNA_S-ischiensis_contig1.206.1|Name=mRNA_S-ischiensis_contig1.206.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=576bp|location=Sequence derived from alignment at S-ischiensis_contig1:1335977..1336560- (Schizocladia ischiensis KU_0333)
GTGGGCAACGCCTCCCAGGCGTTCTTTGGGGGGAAGGGCCCGTTCTGCTC
GAGGTGTAGCAACACGGACCCGCTGCAGCGGCCACAGGTGGGCAACGCCT
CCCAGGCGTTCTTTGGGGGGAAGGGCCCGTTCTGCTCGAGGTGTAGCAAC
ACGGACCCGCTGCAGCGGCCACAGGTGATCCTGTGCACGGCGTGCGCCCG
GGGTTTCCACACCTTCTGCGTTGGCGAGAAGGCCGTGCCGTTCAAGCTCA
CCTCCGCGCAGGAGAGCCGCCACCACGCTGCCTACATCAAGAAGCACCTG
GCCGGGTGGCAGTGCCCCCAGTGCCAGACCCAGGCCTCCATATCCCAGGC
CCCGCCTGCCGCGACGATGGCTGGGGTGATCCTGTGCACGGCGTGCGCCC
GGGGTTTCCACACCTTCTGCGTTGGCGAGAAGGCCGTGCCGTTCAAGCTC
ACCTCCGCGCAGGAGAGCCGCCACCACGCTGCCTACATCAAGAAGCACCT
GGCCGGGTGGCAGTGCCCCCAGTGCCAGACCCAGGCCTCCATATCCCAGG
CCCCGCCTGCCGCGACGATGGCTGGG
back to top