mRNA_S-ischiensis_contig1.148.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.148.1
Unique NamemRNA_S-ischiensis_contig1.148.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.148.1 vs. uniprot
Match: D7FWD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD4_ECTSI)

HSP 1 Score: 374 bits (959), Expect = 2.820e-129
Identity = 183/227 (80.62%), Postives = 202/227 (88.99%), Query Frame = 3 
Query:   42 EDAPSVPKTLAERCEGRQVIVVLEKASLETVKTKKGDFQLLNCDDHRSLITKKSGKDPKDLRPDILHQELLALLDSPLNKAGKLQVYIHTNQNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLKIRATSTSTTLLKVVKNPITRHLPPGCKIYGMSSTGTLYNPHHLAAGLPDDVPVVFHIGAMATGHITVEERPEIEEMVSISEYPLSGAAAISRLMGAIENHWGLF 722
            E  PSVP TL ER +GR+VIV+L++ASLETVKTKKGDFQLLNCDDHR L+TKKSGKDPKDLRPDI+HQELLALLDSPLNKAGKLQVYI T  NVLIEVNPQ+RIPRTFKRFSGLMVQLLHKLKIRA   ST LLKVVKNP TRHLPPG K +G+S  GTLYNP+H AA LPDD P+VF+IGAMA+GH+T +E PEIEEM++ISEYPLSGAAAISRL G IENHWG+F
Sbjct:   12 EGPPSVPATLDERSQGRRVIVILKRASLETVKTKKGDFQLLNCDDHRRLVTKKSGKDPKDLRPDIVHQELLALLDSPLNKAGKLQVYILTTLNVLIEVNPQIRIPRTFKRFSGLMVQLLHKLKIRAAGNSTMLLKVVKNPPTRHLPPGSKTFGLSVEGTLYNPNHFAATLPDDAPIVFYIGAMASGHLTKDENPEIEEMIAISEYPLSGAAAISRLFGGIENHWGIF 238
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BLAST of mRNA_S-ischiensis_contig1.148.1 vs. uniprot
Match: A0A836CMU2_9STRA (Alpha/beta knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMU2_9STRA)

HSP 1 Score: 353 bits (905), Expect = 3.550e-121
Identity = 165/228 (72.37%), Postives = 203/228 (89.04%), Query Frame = 3 
Query:   36 KAEDAPSVPKTLAERCEGRQVIVVLEKASLETVKTKKGDFQLLNCDDHRSLITKKSGKDPKDLRPDILHQELLALLDSPLNKAGKLQVYIHTNQNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLKIRATSTSTTLLKVVKNPITRHLPPGCKIYGMSSTGTLYNPHHLAAGLPDDVPVVFHIGAMATGHITVEERPEIEEMVSISEYPLSGAAAISRLMGAIENHWGL 719
            K ++   +PKTL E+CEGR+V+VVL +ASLETVKT++G+FQLLNCDDH+SLITKKSGKDP DLRPDI+HQELLALLDSPLNKAG+LQVY+HT + VL+EV+PQ RIPRTFKRFSGLMVQLLHKLKIRA +++ TLL+VVKNP+TRHLP G +IYGMS  GTLYNP   AA LP+DVP+V ++GAMA GH+T+ + PE+EEM+S+SEYPLSGAAAI+R++GAIE+ WG+
Sbjct:    2 KDDEHVQLPKTLEEKCEGRRVVVVLWRASLETVKTRRGEFQLLNCDDHKSLITKKSGKDPADLRPDIVHQELLALLDSPLNKAGRLQVYVHTGKGVLVEVSPQTRIPRTFKRFSGLMVQLLHKLKIRAANSNATLLRVVKNPVTRHLPAGARIYGMSVVGTLYNPRLFAAQLPEDVPIVLYVGAMAQGHLTIADHPEVEEMISVSEYPLSGAAAIARVLGAIESEWGI 229
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BLAST of mRNA_S-ischiensis_contig1.148.1 vs. uniprot
Match: A0A6U0WJW5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0WJW5_9STRA)

HSP 1 Score: 315 bits (807), Expect = 2.680e-105
Identity = 152/210 (72.38%), Postives = 179/210 (85.24%), Query Frame = 3 
Query:   90 RQVIVVLEKASLETVKTKKGDFQLLNCDDHRSLITKKSGKDPKDLRPDILHQELLALLDSPLNKAGKLQVYIHTNQNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLKIRATSTSTTLLKVVKNPITRHLPPGCKIYGMSSTGTLYNPHHLAAGLPDDVPVVFHIGAMATGHITVEERPEIEEMVSISEYPLSGAAAISRLMGAIENHWGL 719
            ++VIVVL+KASLETV+TKKGD+QLLN DDHR + T ++ ++P+D RPDILHQEL+ALLDSPLNKAGKLQVYI T  NVLIEVNP+ RIPRTFKRFS LMVQLLHKLKIR+      LL+V+KNP+TRHLP G  IYG+S TG LYNPHH A+ LPDD P+VF IGAM+TGHIT+ + P IEEM+SISEYPLSGA AI+RL+G IENHWG+
Sbjct:   86 QRVIVVLDKASLETVRTKKGDYQLLNADDHRRIAT-QNDRNPRDYRPDILHQELMALLDSPLNKAGKLQVYIKTTANVLIEVNPKTRIPRTFKRFSALMVQLLHKLKIRSADGKDMLLRVIKNPVTRHLPAGAHIYGLSCTGELYNPHHFASALPDDAPIVFIIGAMSTGHITLNDHPYIEEMISISEYPLSGATAINRLVGGIENHWGI 294
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BLAST of mRNA_S-ischiensis_contig1.148.1 vs. uniprot
Match: A0A7S3Q0K3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0K3_9STRA)

HSP 1 Score: 303 bits (775), Expect = 1.520e-99
Identity = 150/236 (63.56%), Postives = 186/236 (78.81%), Query Frame = 3 
Query:   42 EDAPSVPKTLAER----CEGRQVIVVLEKASLETVKTKKGDFQLLNCDDHRSLITKKSGKDPKDLRPDILHQELLALLDSPLNKAGKLQVYIHTNQNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLKIRATSTSTTLLKVVKNPITRHLPPGCKIYGMSSTGTLYNPHHLAAGL------PDDVPVVFHIGAMATGHITVEERPEIEEMVSISEYPLSGAAAISRLMGAIENHWGL 719
            E APSV  T  +R       +++I++L++A LETVK +KG F+LLNCDDHR L  KK  +DPK+ RPDI HQELLAL+DSPLNK+G LQVY  TN+NVL+EVNP +RIPRT+KRFSGLMVQLLHK+KI+A +TSTTL+KV+K P ++HLPPG ++YGMS  GTLY+P+ LA  L       D  PVVF IGAMA GHITVE+ P IE+M+S+SEYPLSGAAAISR++G IEN WG+
Sbjct:  122 EIAPSVQSTDQQRKSSQASKQKIIILLDQARLETVKNRKGLFELLNCDDHRDLCKKKLKRDPKEFRPDIAHQELLALIDSPLNKSGSLQVYFRTNKNVLVEVNPSIRIPRTYKRFSGLMVQLLHKMKIKAGNTSTTLMKVIKGPFSQHLPPGARVYGMSCQGTLYSPNGLATALIPDEQTSDSPPVVFVIGAMAAGHITVEDHPYIEKMISVSEYPLSGAAAISRILGGIENQWGI 357
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BLAST of mRNA_S-ischiensis_contig1.148.1 vs. uniprot
Match: A0A4D9DCH5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCH5_9STRA)

HSP 1 Score: 297 bits (761), Expect = 2.610e-99
Identity = 149/224 (66.52%), Postives = 181/224 (80.80%), Query Frame = 3 
Query:   51 PSVPKTLAERCEGRQVI-VVLEKASLETVKTKKGDFQLLNCDDHRSLITKKSGKDPKDLRPDILHQELLALLDSPLNKAGKLQVYIHTNQNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLKIRATSTSTTLLKVVKNPITRHLPPGCKIYGMSSTGTLYNPHHLAAGLPDDVPVVFHIGAMATGHITVEERPEIEEMVSISEYPLSGAAAISRLMGAIENHWGL 719
            P     + E    ++VI VVL+KASLETVK K G + LLNCDDH++++ KKSGK+P D RPDILHQELLALLDSPLNK GKL+VYI ++ NVLIEVN + RIPRT+KRF+GLMVQLLHKLK+R+     TLLKV+KNP+TR+LP G K YG S  GTLYNP+ LA  LPDD PVVF +GAMA GHITV++ P IEEMVS+S++PLSGA AI+RL+GAIEN+WG+
Sbjct:    4 PESSHDVTESLRNKEVITVVLDKASLETVKMKSGQYCLLNCDDHQAMM-KKSGKNPADYRPDILHQELLALLDSPLNKVGKLKVYIRSSSNVLIEVNAKCRIPRTYKRFAGLMVQLLHKLKVRSADGKATLLKVIKNPVTRYLPAGFKCYGFSVQGTLYNPNALACTLPDDKPVVFVLGAMAAGHITVQDHPYIEEMVSVSDFPLSGATAINRLLGAIENYWGI 226
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BLAST of mRNA_S-ischiensis_contig1.148.1 vs. uniprot
Match: A0A7R9W9I7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W9I7_9STRA)

HSP 1 Score: 294 bits (753), Expect = 1.610e-97
Identity = 151/238 (63.45%), Postives = 186/238 (78.15%), Query Frame = 3 
Query:   42 EDAPSVPKTLAER----CEGRQVIVVLEKASLETVKTKKGDFQLLNCDDHRSLITKKSGKDPKDLRPDILHQELLALLDSPLNKAGKLQVYIHTNQNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLKIRATSTSTTLLKVVKNPITRHLPPGCKIYGMSSTGTLYNPHHLAAGL--PDDV------PVVFHIGAMATGHITVEERPEIEEMVSISEYPLSGAAAISRLMGAIENHWGL 719
            E APSV    AER       +Q+IV+L++A LETVK K+G F+LLNCDDHR L  +K  KDPKD RPDI HQE+LALLDSPLNKAG LQVYI T +NVLIE+NP +RIPRT+KRFSGL+VQLLHK+KI+A  +S TL+KV+KNP ++HLP G +++GMS  GTLY+P+ LAA L  PD        PV F +GAMATGH+TVE+ P IE+M S+SEYPLSGAAAISR++G IEN+WG+
Sbjct:   28 EIAPSVTSLDAERKSTESSKKQIIVLLDQARLETVKNKRGIFELLNCDDHRELCKRKLKKDPKDFRPDICHQEMLALLDSPLNKAGCLQVYIKTCKNVLIEINPSIRIPRTYKRFSGLIVQLLHKMKIKAGGSSETLMKVIKNPFSQHLPAGTRVFGMSCQGTLYSPNALAAALVPPDPSAASGAPPVCFIVGAMATGHVTVEDHPYIEKMFSVSEYPLSGAAAISRILGGIENYWGI 265
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BLAST of mRNA_S-ischiensis_contig1.148.1 vs. uniprot
Match: A0A7S2WTR9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTR9_9STRA)

HSP 1 Score: 289 bits (740), Expect = 6.530e-96
Identity = 143/228 (62.72%), Postives = 178/228 (78.07%), Query Frame = 3 
Query:   39 AEDAPSVPKTLAERCEG-RQVIVVLEKASLETVKTKKGDFQLLNCDDHRSLITKKSGKDPKDLRPDILHQELLALLDSPLNKAGKLQVYIHTNQNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLKIRATSTSTTLLKVVKNPITRHLPPGCKIYGMSSTGTLYNPHHLAAGLPDDVPVVFHIGAMATGHITVEERPEIEEMVSISEYPLSGAAAISRLMGAIENHWGL 719
            A +AP+V + +     G R++IV+L  ASLET KTK+GD++LLNCDDHR  I KK G DP + RPDILHQELLAL+DSPLNKAG LQVYIHT +NVLIEVNP++R+PRTFKRFSGLMVQLLHK KIRA+  S  L+KV+KNP +RH+P GC+ +G S  GTLY P   A+ +PDD P +   GAMA+G I V++ P IE+M SISEYPLSGA A++R+ GAIE+ WG+
Sbjct:   14 AAEAPAVERVVEAAGHGNRKIIVLLTLASLETTKTKRGDYELLNCDDHRQ-IAKKYGLDPAEYRPDILHQELLALIDSPLNKAGLLQVYIHTRKNVLIEVNPKMRVPRTFKRFSGLMVQLLHKFKIRASGNSEMLMKVIKNPFSRHIPAGCRCFGFSVKGTLYKPSSFASLMPDDQPCLLVFGAMASGSIQVQDHPYIEDMASISEYPLSGACALNRICGAIESRWGI 240
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BLAST of mRNA_S-ischiensis_contig1.148.1 vs. uniprot
Match: A0A6S8XKM1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XKM1_9STRA)

HSP 1 Score: 283 bits (724), Expect = 1.030e-92
Identity = 138/216 (63.89%), Postives = 171/216 (79.17%), Query Frame = 3 
Query:   90 RQVIVVLEKASLETVKTKKGDFQLLNCDDHRSLITKKSGKDPKDLRPDILHQELLALLDSPLNKAGKLQVYIHTNQNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLKIRATSTSTTLLKVVKNPITRHLPPGCKIYGMSSTGTLYNPHHLAAGL------PDDVPVVFHIGAMATGHITVEERPEIEEMVSISEYPLSGAAAISRLMGAIENHWGL 719
            +++IV+L+ A LETVK ++  ++LLNCDDHR L T+K  KDPK  RPDI HQELLAL+DSPLNKAG LQVYI T  NVL+E++P +RIPRT+KRFSGLMVQLLHK+KI+A+ +STTL+KV+KNP +RHLP G ++YGMS  G LY+P  LA  +       DD PV F IGAMA GHIT ++ P IEEM S+SEYPLSGAAAISR++G IEN WG+
Sbjct:   78 KKIIVLLDLARLETVKNRRDTYELLNCDDHRDLCTRKLKKDPKQYRPDICHQELLALIDSPLNKAGCLQVYIKTTSNVLVEIHPSIRIPRTYKRFSGLMVQLLHKMKIKASGSSTTLMKVIKNPFSRHLPAGTRVYGMSVGGKLYSPMSLAQAVLSDDPEGDDPPVCFIIGAMAAGHITKDDHPYIEEMFSVSEYPLSGAAAISRILGGIENRWGI 293
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BLAST of mRNA_S-ischiensis_contig1.148.1 vs. uniprot
Match: A0A6V1NKS5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NKS5_HETAK)

HSP 1 Score: 280 bits (716), Expect = 1.690e-92
Identity = 144/211 (68.25%), Postives = 167/211 (79.15%), Query Frame = 3 
Query:   90 RQVIVVLEKASLETVKTKKGDFQLLNCDDHRSLITKKSGKDPKDLRPDILHQELLALLDSPLNKAGKLQVYIHTNQNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLKIRATSTSTTLLKVVKNPITRHLPPGCKIYGMSSTGTLYNPHHLAAGLPDDVPVVFHIGAMATGHITVEERPEIEEMVSISEYPLSGAAAISRLMGAIENHWGLF 722
            R  IV+L+KA LETVKTK+G F+LLNCDDHR+L  K   KDP  LRPDILHQELLALLDSPLNKAGKL+VYI+T +NVLI+VNP +RIPRTFKRF+GLMVQLLHKLKIR+T+ S TLL+V+K P TRHLP  C  Y  S TGTLYNP+  A  LP   P  F IGAMA+GHI  E+ P+  E VS+SEYPLSGA AI+RLMGA+E   G+F
Sbjct:   16 RPYIVLLDKAVLETVKTKRGTFELLNCDDHRNLAGKIK-KDPATLRPDILHQELLALLDSPLNKAGKLKVYINTTKNVLIDVNPAIRIPRTFKRFAGLMVQLLHKLKIRSTNGSDTLLRVIKAPYTRHLPADCHTYVFSVTGTLYNPNQFAGQLPAGKPCCFVIGAMASGHIREEDHPQTVEKVSLSEYPLSGATAINRLMGALETQHGIF 225
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BLAST of mRNA_S-ischiensis_contig1.148.1 vs. uniprot
Match: K0T898_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T898_THAOC)

HSP 1 Score: 280 bits (715), Expect = 1.610e-91
Identity = 137/216 (63.43%), Postives = 173/216 (80.09%), Query Frame = 3 
Query:   90 RQVIVVLEKASLETVKTKKGDFQLLNCDDHRSLITKKSGKDPKDLRPDILHQELLALLDSPLNKAGKLQVYIHTNQNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLKIRATSTSTTLLKVVKNPITRHLPPGCKIYGMSSTGTLYNPHHLAAGL----PDDVP--VVFHIGAMATGHITVEERPEIEEMVSISEYPLSGAAAISRLMGAIENHWGL 719
            +++IV+L++A LET+K ++G+++LLNCDDHR L  KK  KDPK+ RPDI HQELLALLDSPLNK+G LQVYI T++NVLIE++P VRIPRT+KRF+GLMVQLLHK+KI+A+   TTL+KV+KNP ++HLP G  +YGMS  G LYNP  LA  L    P+D    V F IGAMA GH+TVE+ P I +M SISEYPLSGA AI+R++GAIEN WG+
Sbjct:   66 KRLIVLLDQARLETIKNRRGNYELLNCDDHRDLCKKKLKKDPKEFRPDICHQELLALLDSPLNKSGHLQVYIRTSKNVLIELHPSVRIPRTYKRFAGLMVQLLHKMKIKASENGTTLMKVIKNPFSQHLPVGTHVYGMSCQGLLYNPTGLAKALIPVSPEDAEHQVCFIIGAMAAGHVTVEDHPYISKMFSISEYPLSGATAINRILGAIENQWGI 281
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD4_ECTSI2.820e-12980.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMU2_9STRA3.550e-12172.37Alpha/beta knot methyltransferase n=1 Tax=Tribonem... [more]
A0A6U0WJW5_9STRA2.680e-10572.38Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3Q0K3_9STRA1.520e-9963.56Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A4D9DCH5_9STRA2.610e-9966.52Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7R9W9I7_9STRA1.610e-9763.45Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2WTR9_9STRA6.530e-9662.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6S8XKM1_9STRA1.030e-9263.89Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A6V1NKS5_HETAK1.690e-9268.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K0T898_THAOC1.610e-9163.43Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:913648..919159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score373.2
Seed ortholog evalue8.7e-101
Seed eggNOG ortholog2880.D7FWD4
Preferred nameEMG1
KEGG koko:K14568
KEGG Pathwayko03008,map03008
GOsGO:0000154,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0001510,GO:0001701,GO:0001824,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005856,GO:0005874,GO:0005880,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0006997,GO:0007000,GO:0007275,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0015630,GO:0016043,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0017126,GO:0019843,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031167,GO:0031974,GO:0031981,GO:0032040,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0034399,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0042742,GO:0043009,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051704,GO:0051707,GO:0070013,GO:0070037,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098542,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140098,GO:0140102,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.ribosomal RNA small subunit methyltransferase
EggNOG OGsCOG1756@1,KOG3073@2759
EC2.1.1.260
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/beta knot methyltransferases
Ec32 orthologEc-25_000590.1
Exons6
Model size725
Cds size705
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815389.0930803-CDS-S-ischiensis_contig1:913647..9137131622815389.0930803-CDS-S-ischiensis_contig1:913647..913713Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 913648..913713 -
1695739675.5023725-CDS-S-ischiensis_contig1:913647..9137131695739675.5023725-CDS-S-ischiensis_contig1:913647..913713Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 913648..913713 -
1622815389.1067102-CDS-S-ischiensis_contig1:914454..9144871622815389.1067102-CDS-S-ischiensis_contig1:914454..914487Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 914455..914487 -
1695739675.5181282-CDS-S-ischiensis_contig1:914454..9144871695739675.5181282-CDS-S-ischiensis_contig1:914454..914487Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 914455..914487 -
1622815389.119849-CDS-S-ischiensis_contig1:915127..9152551622815389.119849-CDS-S-ischiensis_contig1:915127..915255Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 915128..915255 -
1695739675.538897-CDS-S-ischiensis_contig1:915127..9152551695739675.538897-CDS-S-ischiensis_contig1:915127..915255Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 915128..915255 -
1622815389.1342735-CDS-S-ischiensis_contig1:917601..9177121622815389.1342735-CDS-S-ischiensis_contig1:917601..917712Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 917602..917712 -
1695739675.5558295-CDS-S-ischiensis_contig1:917601..9177121695739675.5558295-CDS-S-ischiensis_contig1:917601..917712Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 917602..917712 -
1622815389.1491215-CDS-S-ischiensis_contig1:918683..9189541622815389.1491215-CDS-S-ischiensis_contig1:918683..918954Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 918684..918954 -
1695739675.5667646-CDS-S-ischiensis_contig1:918683..9189541695739675.5667646-CDS-S-ischiensis_contig1:918683..918954Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 918684..918954 -
1622815389.1636953-CDS-S-ischiensis_contig1:919043..9191391622815389.1636953-CDS-S-ischiensis_contig1:919043..919139Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 919044..919139 -
1695739675.5784743-CDS-S-ischiensis_contig1:919043..9191391695739675.5784743-CDS-S-ischiensis_contig1:919043..919139Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 919044..919139 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815389.1840997-UTR-S-ischiensis_contig1:919139..9191591622815389.1840997-UTR-S-ischiensis_contig1:919139..919159Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 919140..919159 -
1695739675.5879478-UTR-S-ischiensis_contig1:919139..9191591695739675.5879478-UTR-S-ischiensis_contig1:919139..919159Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 919140..919159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.148.1prot_S-ischiensis_contig1.148.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 913648..919139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.148.1

>prot_S-ischiensis_contig1.148.1 ID=prot_S-ischiensis_contig1.148.1|Name=mRNA_S-ischiensis_contig1.148.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=235bp
MGTKRKAEDAPSVPKTLAERCEGRQVIVVLEKASLETVKTKKGDFQLLNC
DDHRSLITKKSGKDPKDLRPDILHQELLALLDSPLNKAGKLQVYIHTNQN
VLIEVNPQVRIPRTFKRFSGLMVQLLHKLKIRATSTSTTLLKVVKNPITR
HLPPGCKIYGMSSTGTLYNPHHLAAGLPDDVPVVFHIGAMATGHITVEER
PEIEEMVSISEYPLSGAAAISRLMGAIENHWGLF*
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mRNA from alignment at S-ischiensis_contig1:913648..919159-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.148.1 ID=mRNA_S-ischiensis_contig1.148.1|Name=mRNA_S-ischiensis_contig1.148.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5512bp|location=Sequence derived from alignment at S-ischiensis_contig1:913648..919159- (Schizocladia ischiensis KU_0333)
GAACAAGTGGCACCACAGCCATGGGGACCAAGCGCAAGGCCGAGGACGCT
CCGTCGGTGCCCAAGACGCTGGCGGAGCGATGCGAAGGTCGCCAGGTTAT
CGTCGTTTTGGAAAAGGTGAGCTCCAGCTTTCGGTGCGTCTCGAACCGAG
CCTCTGCCGCACACCTACCTGTGCACAGTCTAACCGCGCATTCTCCGGTT
CCCAGGCTTCGCTCGAGACGGTGAAGACAAAAAAGGGCGACTTCCAGCTG
CTCAACTGCGACGACCACCGAAGCCTCATCACGAAGAAGTCCGGCAAGGA
TCCCAAGGACCTGCGGCCGGACATCTTGCACCAGGAGTTGCTGGCGCTGC
TGGACAGCCCCCTGAACAAGGCCGGCAAGCTGCAAGTGTACATCCACACG
AACCAGAACGTGCTTATCGAGGTCAACCCCCAGGTTCGCATACCCAGGAC
CTTCAAGCGCTTCTCGGGGCTCATGGGTGAGTGTCGCTCCGGACCCGACC
AAGCTGCGACAAAGCGCGCTCGACTTTTTTTACATTTTAACCCTTTCATC
CCTGAGGTCCATATAACCATAGGGTGTTAGTGTGTACGCCCGATTTACCA
GGGGTAAAAAAGGGTTGACGCCCAGGTAAAGTATTTTTCGTGTCGCTCAC
CGGACATCTGGTAGGCCTGGCGAGCACGACGTTTGGCGTGATAATTAACA
TGTCACTGGCAGGAGGCCCCTGCCATCTCATGGCCGGGGCGGTCCGAGGC
CCTGGCTGCCAGTGTTGTGAACTGGCAAGGCCTACCAGTTTGCCTGTTAA
CCCTTTTATCCCTGCTAGATTGGACTTACACACCAAAACCCTATGATTAT
ACGAACCTCAGGGGTAAAAGGGTTAGCCGGTCTCGTGACCGGGCGTTTTT
AACCGGTTGCCGGTAGCGGCTAAAGTATTGCCAAAATCAACGAATGGCGG
TCGTGTTGCCCGCTCCGGCTACACGATTGGCCACCAGTCAGTTAACCGGT
TAAACCAGTTTACTGGTACCGACCGGGAAAATCCGGCACCAGTTCACAGC
CCTACTGGTTGCCAGTTTTCCACCTGGGAAGATGCGCATCTGTTGGGCAC
TTGAGGGAGTCGCGTACCCCTCGCGTGCTGCGGCCTCTGTCACGGCTAGA
CGTGGGGGCTCTGCGCCCGGGACAAAATATTCAACTTTTGCACGCGGGCC
TTGCCATCTCTGTGTGATTCATATAATTGTACTCGTAACGAGGTACAATC
GCACGTGTATGAGATTGCCGTCTCTGTATGTTCTGCATCTTTGTTTGCCC
AAGGGCGCTTGCTGTGACATACTGCGAAGCAGTTACAAGTAGCAGCTCCC
ACAAAGTCACCGACTGCAGCCCTCATACAGCTAAAAACGGCCTTCCAACC
GCGCGCCCCTGCCGCACGCACGCACACACCCACCCCCCATCCCCCAGTAC
AACTTCTCCACAAGCTCAAGATCAGGGCTACCAGCACAAGCACCACGCTG
CTCAAGGTGGTTAAAAACCCCATCACCAGGCATCTCCCGCCCGGGTGCAA
AATCTACGGTGAGGGGCTCACCTGCTGTATACAGGCATTTGTATCTGTAT
AGTACACGTCTGTATACAATATATCACAGTAAAAACTCCGACAAACGGGC
TGGGTACGTGTAAAAACCCCATCACCAGGCACCTACTGCCCGGGTGCACA
GTCAACGGTGAGGGGCTCAAAACGCCGACGGACAGGCCGGGTACTTGTAC
GTGTGCAGTGCCGGTCAGGAACGATATATGTGTGGGGCACCAGGGGGCTG
TGCGGCGGTCTGCGGTTCTCGTAATATGGGAGGCAGTCCAACAGCACTAC
TACTTCGAAGTACTTCCTCCGGTCTGCATTCTTGGACACCGCTTTTTTAG
AGTGCGGTGAACGTTGCTGTGACGGTCGTCCACAAACGAACGATACACCA
TCGTGACGGCAGTCTCTTGAAGTTCCAAACCCCCCCAAAAAAAGCGAAAT
TGGCCCATTAAGTTCTCGAGATAGGGACGTTTGCATGCGGCGAATATTTT
CACCCCCAAAAAACGGTGTGCTAGAATGACCCGATTTGTGCATGACAATC
GCAGGTGCTAACTTCAGGGAGCGATAACTCGAGCTCTAGCCCTCCGATCG
GGCTGCAACTTTCACCATTGCGACCACCACCTCCAAAACTTCCGAGTCGG
AGAAAAAATTAATCAGCCGTATCATACGTACGTATGTAGGTACGTACGTA
CGTACGATACGGTGAAATCGGGTGAAATCGGTTCTATTTATGCTCATAAC
ATCAGAACCGCAATTCCGATTTCGACGAAAAATTGTCAGAATGTTGTTCT
CGATGAGAGCAATCCATCATGACTGACTCCGCTTGCTAATTCGATCTATA
GCCCGAGAACGGCTTGCATGGCCGATGGCATTTGAATTGGCCCCTGGACG
GCCGCATACGGCCCGGGAAAGGTACGATATGTGATATGATACGTTCTTCC
GTTGGGTGCCCAATTTGGCGGACGGATTCCTGAGTTGACTGGCTCCCTGA
AGCAAGAAACCGCGCAAAAATCTGCCTCTCACAGCCCACAAACGAGCGTC
GCAACTGCAGCGGCGGCACTGTCAGCATATATCGCAGCCCCACCCGGAAG
GTTCGCAGTCACCGGCGCATAACTCCAGAACCACTTCAGCGTTTGAGCTG
AAATTTGAAAGGTGGTAAGGGGTGGGCATGACATATGCATATGCCAAACG
GCATGCATTGGCACGAAGTATTTGCAGCATGCAGGACCAGCAAACAAAAC
GGTGCCTAATAATGTGGACCGGAGGAAGTACTATGTAAGGTAGTAGTTCT
AGTACTCTCTGCAGTACATGTTTTAGTGTATACTCGTACAAGTATATGTA
GAGTATGTACTCAAGTATATATCCCTCTCGACTGAGGCGCGGGGTCAATG
GTCTCGGGACGCACCACGTGAGTACATACTACGTATATATATATACATGC
TATAGTACGAGTAGTACTTGTGGTATGTGCTTCGACGTATTGTACTCATT
GGCTCCTCTTGCAACATAACCTCTTAGCTACAGTTCTTGGGTATCCCGAA
ACTCCATCCGCTAACTATTTGGGTTCTCGAAACTCAAGTCTCCCCAACTA
CTACAGTGAGTAGTATCCTAGAGTATACGTACTGGTACTCATTGGCTCGT
CGTGCGACATAACCTATTTGGCGCACGTAGCCGACAGCCGTATCTCAAAT
CTTAAAGTGTATATGTACTCACGTGGTGCTTGCCGTAGTCCCGATACCAT
TGACCCCGCATGCTGGAGTATCGTGCAGCAGTATATATTGTATGTACTCG
AGTACTCATGATTCACGTGAAGCATCTTTAACTCCTCCGCACTAACGCTG
AGCGTAGTCATAGCTTTGCGGCCATTAGCCCCCGCGTTCCAACTCTACGA
GTATTAGTACACATATATCATTCCGAGGGGAGCACCGTTGCCCAGAGATG
GTGGGCCTGAAAGAAAATCCGAAGACGCAAACGTCTTCTCTCCGCAGTGA
TGGAATATCTAAGCAAACCAACACATTTATCGACAGTACTGATCTAGATA
TCTATCGATAGTCGATATTGGATAGTTCGACCCACAATAAATCCAAGCAG
GTAGCAAACACCATCCACAAAATCAGTCGAGCCCGATAGCTATCTACTGC
TGGATATTCCATCACTGTCTCCCCATGGCCTGTTTGCCCCCAGCCCACGC
GCCCCCGGGCGCCCGCGGGGACAGGCATGTCCTCTACAGGTATGCTGTGC
AACCCGCACCACCTGGCGGCAGGTCTGATGAAAACGCCTTCTGTCCGTGG
CCTGTTTGCCCCGCCCCCCCTCCCCGGCCCACGTGCCCGGGCCCGGGCGA
ACAGGCATGTCCTCTACAGGCACACTGTACAACCCGCACCACCTGGCGGC
GGGTCTGCCAGACGATGTGCCTGTGGTTTTTCACATTGGCGCCATGGCCA
CCGGCCACATCACCGTGGAGGAGAGGCCAGAGGTGGGTAGGCGTTTTGTA
AGTGGGGGGGGGGGCTGGTCCCGTCTTCTTCCTTGTCTGTTCTCAGCGTA
TGTGTGTGTGCGTGTGCGTGTTTTTAAGGGGGGGGGTTGACTTTCCTACT
GCGTACCTATCGTACTCAACAGGCGTTTGGGTACTGTGCTGTATTTTACC
GTACACACCCACGCCGGCGTGTTTAGTCGCTCTTTGTCTCGTTTGGCTTT
TTCCAGTTGCGATGTCTGGTCCTTAATACCCCCGCACCATGCCATGCAGG
GGGGCAGATTGTCCGCTGGGATACGTATGCAAGTACACTACTAGAGTAGT
ACAGTACTACTTTGTACTTCGAAGTACATGCTTTAGTACTCCGAAATGTG
TGTGCTACAGTAGTCTACTCTTGGTACTCGTAGGTATGTGCAGAGCACAT
CTTCTGGCGGCCTTCCGGCCCGGACAAGTGCAAACCTGCCGTGTTCCTTC
CTGCTTTCCTCGCAATGGAAGCCGGGAAACGCGACTCTTTTGCCCGCCGC
GCCCTCTAACCCCACTCCCCGCCCCGCTTTGCCGCCTCCTCATGGTGTCA
TCGTCGTCATCGTCATCTTCGTTGTCGTCGTCTTCGTCGTCACCCACCCC
TTCCGGCCACCCCTTCCGGCAGATTGAAGAGATGGTGTCCATTTCGGAGT
ACCCGGTGAGCTAGCCCTTTTACCCCTGGTAAATTGGACTTACCACTAAA
ACCCTATGATTATACCCCAGGGGTAAAAGGGTTGATAACTTACTTGCCAC
GGGCGCTTTGACGGCCGGCTTGTGCATCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCTTGATATGAGAGCGGGCCAGGGCCGTTCTCTGTGTGGCTGAGTT
TGCTTGGCGGCAAGTGTCTTTTTCATCTGGCCTGCCGGCCTGCCTGCTTG
CCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCCACC
TGCCTGCCTGCCCACCTGCCTGCCTGCCTGCCTGCCCGCCTGCCCTGTGC
TTGCCCTGCCTGCCCGCCCTGCCTGCCCGCCCTGCCTGCCCGCCTGACTT
GTCCGCGCCTCGAGGGCGATCCCCCCGACAGTTCAGTTTCGGTCTCGTCC
TGCCTCCAGGGGCACTGCTTTCTGTACAATGTTTTTCTTTATTTTCTGCT
CTATTTGCCCTGCGAGTGAAGGCGAGTGAAAGGAAGGGCTTCCGGGGGTG
GGGCCCTGAACTCGCGTAAGTAGGAACACCTCTTCGTTCCCACTCGCTCG
TTTATCTTCATGCAAAAAAAAAAAAATGCACCTCATGCTGGATCTATTGC
GCCACCCTCTCCCCCCGGCCCACTGGCCGGCCGCTCCCCGCCAATAACCG
CCCGCCCGTCCCCAACCCATGAACCGACCTTGCCCAATTCTACCAGCTGA
GCGGAGCGGCGGCAATATCACGGCTTATGGGGGCCATCGAGAACCACTGG
GGCCTGTTCTAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:913648..919159-

>mRNA_S-ischiensis_contig1.148.1 ID=mRNA_S-ischiensis_contig1.148.1|Name=mRNA_S-ischiensis_contig1.148.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1410bp|location=Sequence derived from alignment at S-ischiensis_contig1:913648..919159- (Schizocladia ischiensis KU_0333)
ATGGGGACCAAGCGCAAGGCCGAGGACGCTCCGTCGGTGCCCAAGACGCT
GGCGGAGCGATGCGAAGGTCGCCAGGTTATCGTCGTTTTGGAAAAGATGG
GGACCAAGCGCAAGGCCGAGGACGCTCCGTCGGTGCCCAAGACGCTGGCG
GAGCGATGCGAAGGTCGCCAGGTTATCGTCGTTTTGGAAAAGGCTTCGCT
CGAGACGGTGAAGACAAAAAAGGGCGACTTCCAGCTGCTCAACTGCGACG
ACCACCGAAGCCTCATCACGAAGAAGTCCGGCAAGGATCCCAAGGACCTG
CGGCCGGACATCTTGCACCAGGAGTTGCTGGCGCTGCTGGACAGCCCCCT
GAACAAGGCCGGCAAGCTGCAAGTGTACATCCACACGAACCAGAACGTGC
TTATCGAGGTCAACCCCCAGGTTCGCATACCCAGGACCTTCAAGCGCTTC
TCGGGGCTCATGGGCTTCGCTCGAGACGGTGAAGACAAAAAAGGGCGACT
TCCAGCTGCTCAACTGCGACGACCACCGAAGCCTCATCACGAAGAAGTCC
GGCAAGGATCCCAAGGACCTGCGGCCGGACATCTTGCACCAGGAGTTGCT
GGCGCTGCTGGACAGCCCCCTGAACAAGGCCGGCAAGCTGCAAGTGTACA
TCCACACGAACCAGAACGTGCTTATCGAGGTCAACCCCCAGGTTCGCATA
CCCAGGACCTTCAAGCGCTTCTCGGGGCTCATGGTACAACTTCTCCACAA
GCTCAAGATCAGGGCTACCAGCACAAGCACCACGCTGCTCAAGGTGGTTA
AAAACCCCATCACCAGGCATCTCCCGCCCGGGTGCAAAATCTACGTACAA
CTTCTCCACAAGCTCAAGATCAGGGCTACCAGCACAAGCACCACGCTGCT
CAAGGTGGTTAAAAACCCCATCACCAGGCATCTCCCGCCCGGGTGCAAAA
TCTACGGCATGTCCTCTACAGGCACACTGTACAACCCGCACCACCTGGCG
GCGGGTCTGCCAGACGATGTGCCTGTGGTTTTTCACATTGGCGCCATGGC
CACCGGCCACATCACCGTGGAGGAGAGGCCAGAGGCATGTCCTCTACAGG
CACACTGTACAACCCGCACCACCTGGCGGCGGGTCTGCCAGACGATGTGC
CTGTGGTTTTTCACATTGGCGCCATGGCCACCGGCCACATCACCGTGGAG
GAGAGGCCAGAGATTGAAGAGATGGTGTCCATTTCGGAGTACCCGATTGA
AGAGATGGTGTCCATTTCGGAGTACCCGCTGAGCGGAGCGGCGGCAATAT
CACGGCTTATGGGGGCCATCGAGAACCACTGGGGCCTGTTCTAACTGAGC
GGAGCGGCGGCAATATCACGGCTTATGGGGGCCATCGAGAACCACTGGGG
CCTGTTCTAA
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