prot_S-ischiensis_contig92.20943.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig92.20943.1
Unique Nameprot_S-ischiensis_contig92.20943.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length204
Homology
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 3.860e-42
Identity = 99/184 (53.80%), Postives = 124/184 (67.39%), Query Frame = 0
Query:   22 FAPHVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPST-RVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 204
            FA HVLYLSATPIPRSL LA +G++++SQ+ E P RGAA  +ET++VP+++A EVM RLK   D  D +   VFWV+ +I+ S               S  + +L SA ERYD+L  ELGE+RV+LLHGKM +  KN  LS FS   G   G G  VLV+TSIIEVGVDVP A +C+VENAEMF
Sbjct:  561 FAQHVLYLSATPIPRSLTLALYGDMEISQIREMP-RGAAN-IETTLVPVAKAKEVMDRLKGREDTDDKARCGVFWVLPQINKSE--------------SSARQHLASATERYDALVKELGEDRVTLLHGKMTSAEKNRRLSEFS---GGEKGKGLRVLVSTSIIEVGVDVPRAGVCVVENAEMF 725          
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 1.130e-38
Identity = 95/183 (51.91%), Postives = 116/183 (63.39%), Query Frame = 0
Query:   22 FAPHVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 204
            FA HVLYLSATPIPRSL LA FG++++SQ+ E P RG A  +ET+++P+++A EVM RLK                           G  D DD S S  + +L SA ERYD+L  ELGE+RV+LLHGKM +  KN  LS FS   G   G G  VLV+TSIIEVGVDVP A +C+VENAEMF
Sbjct:  175 FAQHVLYLSATPIPRSLTLALFGDMEISQIREMP-RGTAN-IETTLIPVAKAKEVMDRLK---------------------------GREDTDDKSESSTRQHLASATERYDALVKELGEDRVTLLHGKMTSAEKNKRLSEFS---GGEKGKGLRVLVSTSIIEVGVDVPRAGVCVVENAEMF 325          
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A836CEI0_9STRA (ATP-dependent DNA helicase RecG n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI0_9STRA)

HSP 1 Score: 137 bits (346), Expect = 5.900e-34
Identity = 84/184 (45.65%), Postives = 118/184 (64.13%), Query Frame = 0
Query:   25 HVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPST----RVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 204
            HVLY+SATP PR+L+L AFG+VDV+ L E+P RGA+  V+T++         + R++ +LD  DP+T    +VFWV+  +  +  GG           +R +++L SA  R+ SL   LGEERV LLHG+M A  KN VL+ F++P     G+   VLV T+IIEVGVD+P AR+C++ENAE F
Sbjct:  558 HVLYMSATPTPRTLSLTAFGDVDVALLREKP-RGASQHVQTTLT--------VERVRAILD--DPATAHADKVFWVLPLVQEAPSGG-----------TRRRAHLASAERRHASLAEALGEERVGLLHGRMTAAEKNRVLARFAEP-----GSPMRVLVATTIIEVGVDIPEARVCVIENAEQF 714          
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A2D6M630_9PROT (ATP-dependent DNA helicase RecG n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6M630_9PROT)

HSP 1 Score: 114 bits (285), Expect = 7.530e-26
Identity = 75/180 (41.67%), Postives = 107/180 (59.44%), Query Frame = 0
Query:   25 HVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 204
            +VL ++ATPIPR+L  AAFG++DVS+L+E+P     G V+T VVP+SR  +V+  + R L +G+   RV+WV   ID S                    +L +A ER+D+L   LGE RV L+HG M    K++V++ F       A    +VLV T++IEVGVDVP A + +VE+AE F
Sbjct:  415 NVLVMTATPIPRTLTQAAFGDMDVSRLTEKPP--GRGPVDTRVVPVSRINDVVNAISRCLARGE---RVYWVCPLIDESEA-----------------LDLAAATERFDALSHLLGE-RVGLVHGAMKGKEKDAVMARF-------ASGEITVLVATTVIEVGVDVPEATMMVVEHAERF 564          
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A444LH41_9HYPH (ATP-dependent DNA helicase RecG n=1 Tax=Rhizobium sp. 24NR TaxID=2503024 RepID=A0A444LH41_9HYPH)

HSP 1 Score: 114 bits (284), Expect = 1.030e-25
Identity = 70/183 (38.25%), Postives = 110/183 (60.11%), Query Frame = 0
Query:   24 PHVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGE--VETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 204
            PH+L ++ATPIPR+L LAAFG++DVS+L+E+P    AG   ++T+ +P+ R G++++RL+  L +G    + +W+   ++ S                  QS L SA ER+  L  ELG   V L+HG+M    K++V+++F    GE       +LV T+++EVGVDVP A I ++E+AE F
Sbjct:  422 PHMLVMTATPIPRTLVLAAFGDMDVSKLTEKP----AGRKPIQTATIPLERIGDIVSRLRSALAEGK---KAYWICPLVEESD-----------------QSELMSAEERHAVLSRELGTANVGLVHGRMTGPEKDAVMAAFKS--GE-----VRLLVATTVVEVGVDVPDATIMVIEHAENF 573          
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A8G0T3Z6_9RHOB (ATP-dependent DNA helicase RecG n=1 Tax=Roseovarius sp. SCSIO 43702 TaxID=2823043 RepID=A0A8G0T3Z6_9RHOB)

HSP 1 Score: 113 bits (283), Expect = 1.400e-25
Identity = 74/179 (41.34%), Postives = 107/179 (59.78%), Query Frame = 0
Query:   26 VLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 204
            VL ++ATPIPRSLALA +G+++VS L E+P       V T++V ++R GEV+  L+R + +G    + +WV   +D S                   S+L SA ER+ SL  +LGE RV L+HG+MP + K++ +++F    GE      SVLV T++IEVGVDVP A I ++E AE F
Sbjct:  418 VLVMTATPIPRSLALAQYGDMEVSVLDEKPP--GRKPVRTALVNMARMGEVVEHLRRAVAEG---RQAYWVCPLVDESE-----------------VSDLSSAEERFRSLRAQLGEGRVGLVHGQMPPEEKDAAMAAFQA--GE-----TSVLVATTVIEVGVDVPNASIMVIERAEHF 567          
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A1U9Z3N1_9HYPH (ATP-dependent DNA helicase RecG n=6 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1U9Z3N1_9HYPH)

HSP 1 Score: 113 bits (282), Expect = 1.910e-25
Identity = 70/184 (38.04%), Postives = 108/184 (58.70%), Query Frame = 0
Query:   23 APHVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGE--VETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 204
            APH+L +SATPIPR+L LAAFG++DVS L+E+P    AG   ++T  +P+ R G+++ RL+  L +G  S   +W+   ++ S                     L SA ERY++L   LG ++V L+HG+M +  K++ + +F    GE       +LV T+++EVGVDVP A I ++E+AE F
Sbjct:  418 APHLLVMSATPIPRTLVLAAFGDMDVSNLTEKP----AGRKPIQTVTIPLERIGDIVGRLRDALAQGKKS---YWICPLVEESEA-----------------VELMSAEERYETLAKALGPDKVGLIHGRMSSTDKDAAMEAFRS--GE-----TRLLVATTVVEVGVDVPDASIIVIEHAERF 570          
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A1Q9AFP9_9HYPH (ATP-dependent DNA helicase RecG n=3 Tax=Rhizobium TaxID=379 RepID=A0A1Q9AFP9_9HYPH)

HSP 1 Score: 113 bits (282), Expect = 1.920e-25
Identity = 71/184 (38.59%), Postives = 110/184 (59.78%), Query Frame = 0
Query:   23 APHVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGE--VETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 204
            APH+L ++ATPIPR+L LAAFG++DVS+L+E+P    AG   + T+ +P+ R G+V+ARLKR L +G    + +W+   ++ +                  +S L SA ER+  L   LG + V L+HG+M    K++V+ +F +       +   VLV T+++EVGVDVP A I ++E+AE F
Sbjct:  421 APHMLVMTATPIPRTLVLAAFGDMDVSKLTEKP----AGRKPITTATIPLERIGDVVARLKRALAEG---RKAYWICPLVEETE-----------------ESELMSAEERFQVLTSVLGPD-VGLVHGRMSGTEKDAVMQAFKQ-------SEIKVLVATTVVEVGVDVPDASIIVIEHAERF 572          
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A8J7M4D7_9RHOB (ATP-dependent DNA helicase RecG n=1 Tax=Thermohalobaculum xanthum TaxID=2753746 RepID=A0A8J7M4D7_9RHOB)

HSP 1 Score: 112 bits (281), Expect = 2.600e-25
Identity = 75/179 (41.90%), Postives = 108/179 (60.34%), Query Frame = 0
Query:   26 VLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 204
            +L ++ATPIPR+LALA +G++D+S L E+P       VET +V +SRA EV+ARLK +L +G    R +WV   ++ S           DAS      +L +   R+  L   LG E V+L+HG+MPAD K++ +++F       +G  P VLV T++IEVGVDVP A I ++E AE F
Sbjct:  418 LLVMTATPIPRTLALAGYGDLDISVLDEKPP--GRQPVETRLVSLSRADEVVARLKAVLAEG---RRAYWVCPAVEES-----------DAS------DLVAVETRHRLLADALGAEHVALVHGQMPADAKDAAMAAFQ------SGERP-VLVATTVIEVGVDVPEATIMVIEQAEHF 567          
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Match: A0A2U2CSQ8_9RHOB (ATP-dependent DNA helicase RecG n=1 Tax=Pelagicola sp. LXJ1103 TaxID=2175247 RepID=A0A2U2CSQ8_9RHOB)

HSP 1 Score: 112 bits (280), Expect = 3.540e-25
Identity = 70/182 (38.46%), Postives = 107/182 (58.79%), Query Frame = 0
Query:   23 APHVLYLSATPIPRSLALAAFGEVDVSQLSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRIDPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGKMPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVENAEMF 204
            A  VL ++ATPIPRSL+LA +G++D+S L E+P       ++T+++ + R GEV+ RL+R +D G    + +WV   ++ S                    +L SA ER+  L   LGE  V L+HG+MP + K++ +++F +  GE A     VLV+T++IEVGVDVP A I ++E AE F
Sbjct:  415 AADVLVMTATPIPRSLSLAQYGDMDISVLDEKPP--GRKPIKTALIAMDRVGEVVERLRRAIDDG---RQAYWVCPLVEESE-----------------VVDLSSAEERFTRLRTALGEGNVGLVHGQMPPEQKDAAMAAFQR--GETA-----VLVSTTVIEVGVDVPNASIMVIERAESF 567          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig92.20943.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXY9_9PHAE3.860e-4253.80ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
D7FPN7_ECTSI1.130e-3851.91ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A836CEI0_9STRA5.900e-3445.65ATP-dependent DNA helicase RecG n=1 Tax=Tribonema ... [more]
A0A2D6M630_9PROT7.530e-2641.67ATP-dependent DNA helicase RecG n=2 Tax=Rhodospiri... [more]
A0A444LH41_9HYPH1.030e-2538.25ATP-dependent DNA helicase RecG n=1 Tax=Rhizobium ... [more]
A0A8G0T3Z6_9RHOB1.400e-2541.34ATP-dependent DNA helicase RecG n=1 Tax=Roseovariu... [more]
A0A1U9Z3N1_9HYPH1.910e-2538.04ATP-dependent DNA helicase RecG n=6 Tax=Hyphomicro... [more]
A0A1Q9AFP9_9HYPH1.920e-2538.59ATP-dependent DNA helicase RecG n=3 Tax=Rhizobium ... [more]
A0A8J7M4D7_9RHOB2.600e-2541.90ATP-dependent DNA helicase RecG n=1 Tax=Thermohalo... [more]
A0A2U2CSQ8_9RHOB3.540e-2538.46ATP-dependent DNA helicase RecG n=1 Tax=Pelagicola... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 139..198
e-value: 2.2E-6
score: 28.0
NoneNo IPR availableGENE3D3.40.50.300coord: 62..204
e-value: 4.1E-14
score: 54.4
NoneNo IPR availableGENE3D3.40.50.300coord: 13..58
e-value: 3.1E-8
score: 35.2
NoneNo IPR availablePANTHERPTHR14025FAMILY NOT NAMEDcoord: 25..101
NoneNo IPR availablePANTHERPTHR14025:SF29TRANSCRIPTION-REPAIR-COUPLING FACTORcoord: 139..204
coord: 25..101
NoneNo IPR availablePANTHERPTHR14025FAMILY NOT NAMEDcoord: 139..204
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 22..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig92contigS-ischiensis_contig92:331244..336035 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig92.20943.1mRNA_S-ischiensis_contig92.20943.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig92 331243..336035 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig92.20943.1 ID=prot_S-ischiensis_contig92.20943.1|Name=mRNA_S-ischiensis_contig92.20943.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=204bp
GGGSGGGVAGGKGGGSEAGFAFAPHVLYLSATPIPRSLALAAFGEVDVSQ
LSERPERGAAGEVETSVVPISRAGEVMARLKRLLDKGDPSTRVFWVVSRI
DPSTGGGDGHGDDDDASGSRYQSNLGSAIERYDSLCVELGEERVSLLHGK
MPADMKNSVLSSFSKPIGEGAGAGPSVLVTTSIIEVGVDVPAARICIVEN
AEMF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase