prot_S-ischiensis_contig9.20778.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20778.1
Unique Nameprot_S-ischiensis_contig9.20778.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length183
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20778.1 vs. uniprot
Match: D7FSA2_ECTSI (Xpo1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA2_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 5.880e-24
Identity = 62/108 (57.41%), Postives = 72/108 (66.67%), Query Frame = 0 
Query:    1 MEALPRLPAGAAALQRAGAVLAGSLAPWLGSRPALLAHAFSQVVGSLQVAEEGRPHS-MRTKGEDHVGAVALMKLVTAAGPTLSAAPGLPRHLLETYLSLSRRLLRHR 107
            +E LP LP G   LQR+ AVL G LA WL  RP  L  A   V+G L + EEG   + MR KGEDHVGAVAL KLV+AAGP+L+A P LP HLL+ YL LS +L  HR
Sbjct:  729 VEMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEEGGGQAFMRDKGEDHVGAVALSKLVSAAGPSLAAVPSLPTHLLQRYLGLSAQLQSHR 836
[Close]
BLAST of mRNA_S-ischiensis_contig9.20778.1 vs. uniprot
Match: A0A6H5L1R2_9PHAE (Xpo1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R2_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 8.350e-20
Identity = 59/109 (54.13%), Postives = 70/109 (64.22%), Query Frame = 0 
Query:    1 MEALPRLPAGAAALQRAGAVLAGSLAPWLGSRPALLAHAFSQVVGSLQVAEEGRPHS-MRTKGEDHV-GAVALMKLVTAAGPTLSAAPGLPRHLLETYLSLSRRLLRHR 107
            ++ LP LP G   LQR+ AVL G LA WL  RP  L  A   V+G L + EEG   + MR KGEDHV GAVAL KLV+AAGP+L+A   LP HLL+ Y  LS +L  HR
Sbjct:  726 VDMLPSLPPGRRELQRSAAVLVGGLAAWLARRPRSLEPALQSVLGVLGLEEEGGGQAFMRDKGEDHVVGAVALSKLVSAAGPSLAAVRSLPTHLLQRYHGLSSQLQSHR 834
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20778.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSA2_ECTSI5.880e-2457.41Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L1R2_9PHAE8.350e-2054.13Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3154140..3157446 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20778.1mRNA_S-ischiensis_contig9.20778.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 3154112..3157446 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20778.1 ID=prot_S-ischiensis_contig9.20778.1|Name=mRNA_S-ischiensis_contig9.20778.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=183bp
MEALPRLPAGAAALQRAGAVLAGSLAPWLGSRPALLAHAFSQVVGSLQVA
EEGRPHSMRTKGEDHVGAVALMKLVTAAGPTLSAAPGLPRHLLETYLSLS
RRLLRHRYAGTWAADAVETAATAVAGPWQQQQQQQWRPGGGAGGAVPWDD
DGDPSSPPPLHAGSTRLLLACLCKLLGAGLGSG
back to top