prot_S-ischiensis_contig9.20719.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20719.1
Unique Nameprot_S-ischiensis_contig9.20719.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length124
Homology
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BLAST of mRNA_S-ischiensis_contig9.20719.1 vs. uniprot
Match: D8LSM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM8_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.050e-21
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 0 
Query:   38 TDVEVLLELPVGGSKSLGVTLARNPREDKIFVKAFPRGPGGQRGLLESTRLVEVGDCLAAVNGGPVDQSN-LALATSILRSAEWPLSL 124
            T+VEV L +P   S   GVT A++PR++KIF+KAFPRGP G+RG+LEST LVE+ DCL A+NG  VD+S+ L    + +R+AE PLSL
Sbjct:    6 TEVEVELHVPDDVSTFFGVTWAQDPRKNKIFIKAFPRGPNGRRGILESTGLVELDDCLTAINGVSVDKSSALHEVMASIRAAESPLSL 93
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20719.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM8_ECTSI2.050e-2156.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.42.10coord: 38..124
e-value: 2.6E-6
score: 29.2
IPR001478PDZ domainPROSITEPS50106PDZcoord: 41..124
score: 10.195
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 44..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2820651..2821390 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20719.1mRNA_S-ischiensis_contig9.20719.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 2820651..2821390 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20719.1 ID=prot_S-ischiensis_contig9.20719.1|Name=mRNA_S-ischiensis_contig9.20719.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=124bp
MQLWRLQFTPNPLGALTMDVPRAWTPARARGGQRGHDTDVEVLLELPVGG
SKSLGVTLARNPREDKIFVKAFPRGPGGQRGLLESTRLVEVGDCLAAVNG
GPVDQSNLALATSILRSAEWPLSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf