prot_S-ischiensis_contig9.20705.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20705.1
Unique Nameprot_S-ischiensis_contig9.20705.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length243
Homology
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BLAST of mRNA_S-ischiensis_contig9.20705.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.010e-40
Identity = 93/212 (43.87%), Postives = 119/212 (56.13%), Query Frame = 0 
Query:    7 LGNLGEWGPSAGVPKAMDWSLSQRMFDLLESDGDARVMHDALRILSRHEGGFLPSSAASAWTAGERVVVLLALSMVVTNARNLNMYTMEGIERQESLLRKVRKNAPLSAATF--GGMLHSVGGDEAVDRWQARWRELAREAGGGGGAXXXGTEPGSLDEGGADHTAHEDRSGIKGACVVCWCAT-HTRDPAVLLCDGCEGEVHASP-CSGAR 214
            +G +GEWGPS GVPKA+DWSLS+R  + LES+ +ARV+HDALRILSR EGG+LPS     W+ GE V VL AL  +      LN +  +  +R E+L +KV     +S  +F   GML SVGG+ AV+ WQ   + +  E                 DE   D     D     G C+VCWC T H     +L+CDGC+GEVH    CSG R
Sbjct: 1670 VGGMGEWGPSEGVPKALDWSLSRRARECLESEDNARVLHDALRILSRREGGWLPSPTGC-WSPGEWVAVLAALVAMAVETHTLNHFFSDAEQRCENLRKKVVSGTKMSTRSFQASGMLLSVGGNGAVEFWQRLMKSVDGEMD---------AVKNCADE--EDXXXXXDFGKTPGVCIVCWCPTAHIDASQILMCDGCQGEVHLKKSCSGFR 1869
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BLAST of mRNA_S-ischiensis_contig9.20705.1 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 3.450e-40
Identity = 91/217 (41.94%), Postives = 119/217 (54.84%), Query Frame = 0 
Query:    7 LGNLGEWGPSAGVPKAMDWSLSQRMFDLLESDGDARVMHDALRILSRHEGGFLPSSAASAWTAGERVVVLLALSMVVTNARNLNMYTMEGIERQESLLRKVRKNAPLSAATFGGMLHSVGGDEAVDRWQARWRELAREAGGGGGAXXXGTEPGSLDEGGADHTAHEDRSGIK-------GACVVCWCAT-HTRDPAVLLCDGCEGEVHASP-CSGAR 214
            +G +GEWGPS GVPKA+DWSLS+R  + LES+ +ARV+HDALRIL R EGG+LPS     W+ GE V VL AL  +      LN +  +  +R E+L +K      +S  +F GML SVGG+ AV+ WQ   + +                 G +D     + A ED            G C+VCWC T H     +L+CDGC+GEVH    CSG R
Sbjct: 1276 VGGMGEWGPSEGVPKALDWSLSRRARECLESEDNARVLHDALRILGRREGGWLPSPTGC-WSPGEWVAVLAALVAMAVETHTLNHFFSDAEQRCENLRKKAVSGTKMSTRSFQGMLLSVGGNGAVEFWQRLMKSV----------------DGEMDA--VKNCADEDXXXXXXDFGKTPGVCIVCWCPTAHIDASQILMCDGCQGEVHLKKSCSGFR 1473
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20705.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQ21_9PHAE1.010e-4043.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI13_ECTSI3.450e-4041.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 161..242
e-value: 4.1E-6
score: 28.3
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 180..236

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2717117..2722498 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20705.1mRNA_S-ischiensis_contig9.20705.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 2717117..2722500 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20705.1 ID=prot_S-ischiensis_contig9.20705.1|Name=mRNA_S-ischiensis_contig9.20705.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=243bp
TEDAFELGNLGEWGPSAGVPKAMDWSLSQRMFDLLESDGDARVMHDALRI
LSRHEGGFLPSSAASAWTAGERVVVLLALSMVVTNARNLNMYTMEGIERQ
ESLLRKVRKNAPLSAATFGGMLHSVGGDEAVDRWQARWRELAREAGGGGG
AGAGGTEPGSLDEGGADHTAHEDRSGIKGACVVCWCATHTRDPAVLLCDG
CEGEVHASPCSGARPRSRELNNPEARYECPYCQQKENESAAKG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD