prot_S-ischiensis_contig9.20687.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20687.1
Unique Nameprot_S-ischiensis_contig9.20687.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length94
Homology
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BLAST of mRNA_S-ischiensis_contig9.20687.1 vs. uniprot
Match: D7FT24_ECTSI (Similar to ataxia telangiectasia and Rad3 related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT24_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.630e-13
Identity = 45/95 (47.37%), Postives = 56/95 (58.95%), Query Frame = 0 
Query:    1 AWAVRLLHGLVVDKRSVLSNKLHLVPFVPDLPGL---GRASAALVEALGRPGLAEQLGRLTGLLYDESVQVRLTALKHLLLVLSRDRRLLRPLLL 92
            A A  LL  L+V+K+  +S   H +PF+P L      G   A L   LG   L EQLGRLT LL DES +VR  ALKHL LV+ RD++ L  L+L
Sbjct:  307 ATAAALLRLLIVEKQDKMSTHFHKIPFMPQLXXXXXXGEVGAVLSRELGYQSLREQLGRLTPLLRDESTEVRRAALKHLALVVRRDKQHLAELVL 401
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20687.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT24_ECTSI4.630e-1347.37Similar to ataxia telangiectasia and Rad3 related ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2653642..2654654 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20687.1mRNA_S-ischiensis_contig9.20687.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 2653642..2654656 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20687.1 ID=prot_S-ischiensis_contig9.20687.1|Name=mRNA_S-ischiensis_contig9.20687.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=94bp
AWAVRLLHGLVVDKRSVLSNKLHLVPFVPDLPGLGRASAALVEALGRPGL
AEQLGRLTGLLYDESVQVRLTALKHLLLVLSRDRRLLRPLLLGS
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