mRNA_S-ischiensis_contig9.20687.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20687.1
Unique NamemRNA_S-ischiensis_contig9.20687.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20687.1 vs. uniprot
Match: D7FT24_ECTSI (Similar to ataxia telangiectasia and Rad3 related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT24_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.630e-13
Identity = 45/95 (47.37%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:    1 AWAVRLLHGLVVDKRSVLSNKLHLVPFVPDLPGL---GRASAALVEALGRPGLAEQLGRLTGLLYDESVQVRLTALKHLLLVLSRDRRLLRPLLL 276
            A A  LL  L+V+K+  +S   H +PF+P L      G   A L   LG   L EQLGRLT LL DES +VR  ALKHL LV+ RD++ L  L+L
Sbjct:  307 ATAAALLRLLIVEKQDKMSTHFHKIPFMPQLXXXXXXGEVGAVLSRELGYQSLREQLGRLTPLLRDESTEVRRAALKHLALVVRRDKQHLAELVL 401
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT24_ECTSI4.630e-1347.37Similar to ataxia telangiectasia and Rad3 related ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2653642..2654656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue5.7e-11
Seed eggNOG ortholog2880.D7FT24
KEGG koko:K06640
KEGG Pathwayko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0033554,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0890@2759
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817396.0003088-CDS-S-ischiensis_contig9:2653641..26538421622817396.0003088-CDS-S-ischiensis_contig9:2653641..2653842Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2653642..2653842 +
1695741082.7297406-CDS-S-ischiensis_contig9:2653641..26538421695741082.7297406-CDS-S-ischiensis_contig9:2653641..2653842Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2653642..2653842 +
1622817396.0119388-CDS-S-ischiensis_contig9:2654573..26546541622817396.0119388-CDS-S-ischiensis_contig9:2654573..2654654Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2654574..2654654 +
1695741082.7453458-CDS-S-ischiensis_contig9:2654573..26546541695741082.7453458-CDS-S-ischiensis_contig9:2654573..2654654Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2654574..2654654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20687.1prot_S-ischiensis_contig9.20687.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2653642..2654654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20687.1

>prot_S-ischiensis_contig9.20687.1 ID=prot_S-ischiensis_contig9.20687.1|Name=mRNA_S-ischiensis_contig9.20687.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=94bp
AWAVRLLHGLVVDKRSVLSNKLHLVPFVPDLPGLGRASAALVEALGRPGL
AEQLGRLTGLLYDESVQVRLTALKHLLLVLSRDRRLLRPLLLGS
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mRNA from alignment at S-ischiensis_contig9:2653642..2654656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20687.1 ID=mRNA_S-ischiensis_contig9.20687.1|Name=mRNA_S-ischiensis_contig9.20687.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1015bp|location=Sequence derived from alignment at S-ischiensis_contig9:2653642..2654656+ (Schizocladia ischiensis KU_0333)
GCGTGGGCCGTGCGGCTGCTGCATGGGCTGGTTGTGGACAAGAGGTCCGT
TCTCAGCAATAAGCTCCACCTGGTCCCCTTCGTGCCCGACCTGCCCGGGC
TGGGGAGGGCCAGCGCCGCCCTGGTGGAGGCGCTGGGGCGGCCGGGGCTG
GCGGAGCAGCTGGGGCGGCTCACGGGCCTCTTGTACGACGAGAGCGTCCA
GGTGATTCATATGAATTGTAACGGGGTACAATCGCACGTGTGTGAGATTG
AGTGTTCTCAGAGCGTCCAGGTACGGCTTGAGTTAGCAAAACAGTTGACT
GACTGCTGCAGCGATCTGGCAATGTGCGGGGCGCAGGGGGGATGGGGAGG
CCCTGCTGGCCTTCCGGAAATGCGGGCCTTTTGCGGGAGATTGGGAACGG
TTCGGCGGGCCAGTTTGTTTCTGCTGAAGAAAGTGGCCATTATTATCATA
CACTGTAGGAGGGGGGGGGGTTCGGGCCTGTCAGCCCTAGTCTGCACCTC
TCACGCCCTGGCCACCTGCGAACTCTTCTTCGCTCCACAAACGTCCGGTT
TCGCCTGCCCTTTTGGACTCCGAAACCTGGCAGTTTCCCGCTGGGGGGGT
CCTCACGGTTGTTGTCGCTCATTCACTACTTGGTTTTAAGTGTTTAGCGG
CCTGCTGCTGTACCTCTGCTTCAGTTTGGCCTGCTAGTAACCCCCCGACA
TCCCTCCCTCCCTCCCCCACCACCACCGCCCCCCCGACCCCTCGTAAAAC
AGAAATTATCAACACACGCACGCGCACACACGCACACATGGAAGTCCGTC
CGCCTGACCTCAAATCCCCAACTCCCTCCCTCCCGGCCCCACTACCCCCC
CCCCCACCCCCCGCACTAAAAACGAACACACAACACCAACACACACGCAC
ACGCACACGCACACGCACACACACACACACAGGTCCGCCTGACCGCCCTC
AAGCACCTCCTCCTCGTCCTCTCCCGGGACCGCCGCCTCCTGCGGCCCCT
CCTCCTGGGCAGCTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2653642..2654656+

>mRNA_S-ischiensis_contig9.20687.1 ID=mRNA_S-ischiensis_contig9.20687.1|Name=mRNA_S-ischiensis_contig9.20687.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=564bp|location=Sequence derived from alignment at S-ischiensis_contig9:2653642..2654656+ (Schizocladia ischiensis KU_0333)
GCGTGGGCCGTGCGGCTGCTGCATGGGCTGGTTGTGGACAAGAGGTCCGT
TCTCAGCAATAAGCTCCACCTGGTCCCCTTCGTGCCCGACCTGCCCGGGC
TGGGGAGGGCCAGCGCCGCCCTGGTGGAGGCGCTGGGGCGGCCGGGGCTG
GCGGAGCAGCTGGGGCGGCTCACGGGCCTCTTGTACGACGAGAGCGTCCA
GGCGTGGGCCGTGCGGCTGCTGCATGGGCTGGTTGTGGACAAGAGGTCCG
TTCTCAGCAATAAGCTCCACCTGGTCCCCTTCGTGCCCGACCTGCCCGGG
CTGGGGAGGGCCAGCGCCGCCCTGGTGGAGGCGCTGGGGCGGCCGGGGCT
GGCGGAGCAGCTGGGGCGGCTCACGGGCCTCTTGTACGACGAGAGCGTCC
AGGTCCGCCTGACCGCCCTCAAGCACCTCCTCCTCGTCCTCTCCCGGGAC
CGCCGCCTCCTGCGGCCCCTCCTCCTGGGCAGCGTCCGCCTGACCGCCCT
CAAGCACCTCCTCCTCGTCCTCTCCCGGGACCGCCGCCTCCTGCGGCCCC
TCCTCCTGGGCAGC
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