prot_S-ischiensis_contig9.20679.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20679.1
Unique Nameprot_S-ischiensis_contig9.20679.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length129
Homology
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: A0A835YVP5_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP5_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.510e-53
Identity = 80/122 (65.57%), Postives = 102/122 (83.61%), Query Frame = 0
Query:    1 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPVQSSEGPKGQRAAILRKGA 122
            MSVTGN G+GMP+ILLHDAEG + TVEVKSG+V RG LDE+EDNMNI++K+++KTD  GKT+ L ++Y+RG+QIV VIVPDM+++  MFKRI +WRK+KG+PP  +S    GQRAAILRK A
Sbjct:    1 MSVTGNAGIGMPVILLHDAEGAVCTVEVKSGEVYRGILDEAEDNMNILMKDILKTDVRGKTSTLSKMYIRGSQIVLVIVPDMLRRAAMFKRIVMWRKYKGNPPSLASSANTGQRAAILRKAA 122          
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: A0A6H5L429_9PHAE (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L429_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 6.280e-52
Identity = 77/110 (70.00%), Postives = 97/110 (88.18%), Query Frame = 0
Query:   11 MPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPVQSSEGPKGQRAAILRK 120
            MPIILLHDAEGGI+TVE+K+G+V RG LDE+ED+MN++LK+ +KT+  GKT+ LQQLY+RGNQIVF IVP+M++  PMF RI+ WRK+KGHPPV +SEG KGQRAAI+RK
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK 110          
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: A0A6U1QDM6_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QDM6_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.360e-50
Identity = 79/120 (65.83%), Postives = 99/120 (82.50%), Query Frame = 0
Query:    1 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPVQSSEGPKGQRAAILRK 120
            MSVTG +GVG+PII+LHDAEG IVTVE+K+G+  RG LDE+EDNMN IL +V KT   GK +++ QLYVRG+QI FV+VPD ++KGPMFKRIQ+WRK+KG+PP   S  P+GQ AAI+RK
Sbjct:    1 MSVTGKRGVGIPIIMLHDAEGCIVTVELKNGETYRGLLDEAEDNMNCILVDVTKTTPMGKISKVDQLYVRGSQISFVVVPDTLQKGPMFKRIQMWRKYKGNPPSLGSVVPRGQAAAIIRK 120          
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: D7FT20_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT20_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.830e-49
Identity = 77/112 (68.75%), Postives = 97/112 (86.61%), Query Frame = 0
Query:   11 MPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPVQSSEGPKGQRAAILRKGA 122
            MPIILLHDAEGGI+TVE+K+G+V RG LDE+ED+MN++LK+ +KT+  GKT+ LQQLY+RGNQIVF IVP+M++  PMF RI+  RK+KGHPPV +SEG KGQRAAI+RK A
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQGRKYKGHPPVLASEGAKGQRAAIIRKAA 112          
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: A0A7S3K1R1_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1R1_9STRA)

HSP 1 Score: 149 bits (376), Expect = 6.370e-44
Identity = 68/120 (56.67%), Postives = 95/120 (79.17%), Query Frame = 0
Query:    1 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPVQSSEGPKGQRAAILRK 120
            MSVTG +G+G+PIIL+HD EG IVTVE K+GD+ RG LDE+EDNMN I+K+V KT +EGK +Q++ +++RG+QI+F + P M+KK PMFKR++ WRK +G+  +   E  +GQ AAI+RK
Sbjct:   18 MSVTGKRGIGVPIILMHDGEGTIVTVECKNGDMYRGFLDETEDNMNCIMKDVTKTSAEGKKSQIEHIFIRGSQILFFVFPTMLKKAPMFKRVRTWRKHRGN--ISKGEEARGQAAAIIRK 135          
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: I2CSB6_NANGC (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSB6_NANGC)

HSP 1 Score: 146 bits (369), Expect = 6.530e-43
Identity = 67/120 (55.83%), Postives = 98/120 (81.67%), Query Frame = 0
Query:    1 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPVQSSEGPKGQRAAILRK 120
            MSVTG  GVG+PIILLHDAEGGI+TVE ++G++ RG LDE+EDNMN+IL++V KT+  GK ++++ +Y++G+Q+ F+I+PDM+KK PMFKRI++W+K+ G+ P +   G +GQ A I +K
Sbjct:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVWKKYHGNVP-ELGAGVRGQAAVISQK 119          
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: F0W7K3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7K3_9STRA)

HSP 1 Score: 146 bits (369), Expect = 6.530e-43
Identity = 68/125 (54.40%), Postives = 94/125 (75.20%), Query Frame = 0
Query:    1 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPV-----QSSEGPKGQRAAILRK 120
            M+VTG +GVG+P ILLHD EG  V++E+KSG++ RG L+E+EDNMN +LKE ++TD  G TT ++ +YVRG+QI+F++ PDM+K  PMFKR++LW+K KG  P          GP+GQ AAI+RK
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTTVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVELVYVRGSQILFIVFPDMLKHAPMFKRVKLWKKHKGVIPSLGQGGPGGAGPRGQAAAIIRK 125          
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: W4G1B8_9STRA (Small nuclear ribonucleoprotein Sm D3 n=5 Tax=Aphanomyces TaxID=100860 RepID=W4G1B8_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.040e-41
Identity = 67/128 (52.34%), Postives = 91/128 (71.09%), Query Frame = 0
Query:    1 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPP---------VQSSEGPKGQRAAILR 119
            M+VTG +GVG+P ILLHD EG IVTVE+K+GD+ RG LDE+EDNMN +LK+ I+TD  G TT  + +Y+RG+QIVF++ PDM+K  P FKR++LW+K +G  P         +    GP+GQ  A +R
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVEMKNGDLYRGYLDETEDNMNCLLKDAIRTDVRGITTHCEHVYLRGSQIVFIVFPDMLKHAPFFKRVKLWKKHRGSIPALGLGGGAHIGLGSGPRGQTGAHMR 128          
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: K3X3X6_GLOUD (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3X6_GLOUD)

HSP 1 Score: 139 bits (351), Expect = 4.540e-40
Identity = 67/130 (51.54%), Postives = 92/130 (70.77%), Query Frame = 0
Query:    1 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKK-----GPMFKRIQLWRKFKGHPPV-----QSSEGPKGQRAAILRK 120
            M+VTG +GVG+P ILLHD EG IV++E+KSG+  RG LDE+EDNMN +LK+ ++T+  G TT ++Q+Y+RG QI+F+I PD+         PMFKR++LW+K KG  P          GP+GQ AAI+RK
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVSIELKSGETYRGFLDETEDNMNCVLKDAVRTELNGSTTHVEQVYIRGGQILFIIFPDIYPSLLPTHAPMFKRVKLWKKHKGSIPALGQGGPGGGGPRGQAAAIIRK 130          
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: D0NPB0_PHYIT (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Peronosporaceae TaxID=4777 RepID=D0NPB0_PHYIT)

HSP 1 Score: 139 bits (350), Expect = 6.840e-40
Identity = 65/135 (48.15%), Postives = 96/135 (71.11%), Query Frame = 0
Query:    1 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDM----------IKKGPMFKRIQLWRKFKGHPPVQSSEG-----PKGQRAAILRK 120
            M+VTG +GVG+P ILLHD EG IV++E+K+G+  RG LDE+EDNMN ++K+ ++TD  G T+Q++Q+Y+RG+QI+F++ PD+          +K  PMFKR+++W+K KG  P     G     P+GQ AAI+RK
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTSQVEQVYLRGSQILFIVFPDIYPLQPDIAVTLKHAPMFKRVKMWKKHKGSIPTLGQGGVGGGAPRGQAAAIIRK 135          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVP5_9STRA2.510e-5365.57Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A6H5L429_9PHAE6.280e-5270.00Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A6U1QDM6_9STRA3.360e-5065.83Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
D7FT20_ECTSI1.830e-4968.75Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A7S3K1R1_9STRA6.370e-4456.67Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
I2CSB6_NANGC6.530e-4355.83Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
F0W7K3_9STRA6.530e-4354.40Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albu... [more]
W4G1B8_9STRA9.040e-4152.34Small nuclear ribonucleoprotein Sm D3 n=5 Tax=Apha... [more]
K3X3X6_GLOUD4.540e-4051.54Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Glob... [more]
D0NPB0_PHYIT6.840e-4048.15Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Pero... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 14..79
e-value: 1.5E-11
score: 54.4
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 16..78
e-value: 7.0E-16
score: 57.7
NoneNo IPR availableGENE3D2.30.30.100coord: 7..90
e-value: 5.4E-27
score: 95.1
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 9..122
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 9..122
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 13..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2613975..2616737 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20679.1mRNA_S-ischiensis_contig9.20679.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 2613975..2616931 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20679.1 ID=prot_S-ischiensis_contig9.20679.1|Name=mRNA_S-ischiensis_contig9.20679.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=129bp
MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILK
EVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKG
HPPVQSSEGPKGQRAAILRKGAGAIAAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf