mRNA_S-ischiensis_contig9.20679.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20679.1
Unique NamemRNA_S-ischiensis_contig9.20679.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: A0A835YVP5_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP5_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.810e-52
Identity = 80/122 (65.57%), Postives = 102/122 (83.61%), Query Frame = 3 
Query:  195 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPVQSSEGPKGQRAAILRKGA 560
            MSVTGN G+GMP+ILLHDAEG + TVEVKSG+V RG LDE+EDNMNI++K+++KTD  GKT+ L ++Y+RG+QIV VIVPDM+++  MFKRI +WRK+KG+PP  +S    GQRAAILRK A
Sbjct:    1 MSVTGNAGIGMPVILLHDAEGAVCTVEVKSGEVYRGILDEAEDNMNILMKDILKTDVRGKTSTLSKMYIRGSQIVLVIVPDMLRRAAMFKRIVMWRKYKGNPPSLASSANTGQRAAILRKAA 122
[Close]
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: A0A6H5L429_9PHAE (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L429_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 6.970e-51
Identity = 77/110 (70.00%), Postives = 97/110 (88.18%), Query Frame = 3 
Query:  225 MPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPVQSSEGPKGQRAAILRK 554
            MPIILLHDAEGGI+TVE+K+G+V RG LDE+ED+MN++LK+ +KT+  GKT+ LQQLY+RGNQIVF IVP+M++  PMF RI+ WRK+KGHPPV +SEG KGQRAAI+RK
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQWRKYKGHPPVLASEGAKGQRAAIIRK 110
[Close]
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: A0A6U1QDM6_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QDM6_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.690e-49
Identity = 79/120 (65.83%), Postives = 99/120 (82.50%), Query Frame = 3 
Query:  195 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPVQSSEGPKGQRAAILRK 554
            MSVTG +GVG+PII+LHDAEG IVTVE+K+G+  RG LDE+EDNMN IL +V KT   GK +++ QLYVRG+QI FV+VPD ++KGPMFKRIQ+WRK+KG+PP   S  P+GQ AAI+RK
Sbjct:    1 MSVTGKRGVGIPIIMLHDAEGCIVTVELKNGETYRGLLDEAEDNMNCILVDVTKTTPMGKISKVDQLYVRGSQISFVVVPDTLQKGPMFKRIQMWRKYKGNPPSLGSVVPRGQAAAIIRK 120
[Close]
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: D7FT20_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT20_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.010e-48
Identity = 77/112 (68.75%), Postives = 97/112 (86.61%), Query Frame = 3 
Query:  225 MPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPVQSSEGPKGQRAAILRKGA 560
            MPIILLHDAEGGI+TVE+K+G+V RG LDE+ED+MN++LK+ +KT+  GKT+ LQQLY+RGNQIVF IVP+M++  PMF RI+  RK+KGHPPV +SEG KGQRAAI+RK A
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIRGNQIVFCIVPNMLRNAPMFARIKQGRKYKGHPPVLASEGAKGQRAAIIRKAA 112
[Close]
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: A0A7S3K1R1_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1R1_9STRA)

HSP 1 Score: 149 bits (376), Expect = 6.650e-43
Identity = 68/120 (56.67%), Postives = 95/120 (79.17%), Query Frame = 3 
Query:  195 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPVQSSEGPKGQRAAILRK 554
            MSVTG +G+G+PIIL+HD EG IVTVE K+GD+ RG LDE+EDNMN I+K+V KT +EGK +Q++ +++RG+QI+F + P M+KK PMFKR++ WRK +G+  +   E  +GQ AAI+RK
Sbjct:   18 MSVTGKRGIGVPIILMHDGEGTIVTVECKNGDMYRGFLDETEDNMNCIMKDVTKTSAEGKKSQIEHIFIRGSQILFFVFPTMLKKAPMFKRVRTWRKHRGN--ISKGEEARGQAAAIIRK 135
[Close]
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: I2CSB6_NANGC (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSB6_NANGC)

HSP 1 Score: 146 bits (369), Expect = 6.750e-42
Identity = 67/120 (55.83%), Postives = 98/120 (81.67%), Query Frame = 3 
Query:  195 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPVQSSEGPKGQRAAILRK 554
            MSVTG  GVG+PIILLHDAEGGI+TVE ++G++ RG LDE+EDNMN+IL++V KT+  GK ++++ +Y++G+Q+ F+I+PDM+KK PMFKRI++W+K+ G+ P +   G +GQ A I +K
Sbjct:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIYIKGSQVNFMILPDMLKKAPMFKRIKVWKKYHGNVP-ELGAGVRGQAAVISQK 119
[Close]
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: F0W7K3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7K3_9STRA)

HSP 1 Score: 146 bits (369), Expect = 6.750e-42
Identity = 68/125 (54.40%), Postives = 94/125 (75.20%), Query Frame = 3 
Query:  195 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPPV-----QSSEGPKGQRAAILRK 554
            M+VTG +GVG+P ILLHD EG  V++E+KSG++ RG L+E+EDNMN +LKE ++TD  G TT ++ +YVRG+QI+F++ PDM+K  PMFKR++LW+K KG  P          GP+GQ AAI+RK
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTTVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVELVYVRGSQILFIVFPDMLKHAPMFKRVKLWKKHKGVIPSLGQGGPGGAGPRGQAAAIIRK 125
[Close]
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: W4G1B8_9STRA (Small nuclear ribonucleoprotein Sm D3 n=5 Tax=Aphanomyces TaxID=100860 RepID=W4G1B8_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.160e-40
Identity = 67/128 (52.34%), Postives = 91/128 (71.09%), Query Frame = 3 
Query:  195 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKGHPP---------VQSSEGPKGQRAAILR 551
            M+VTG +GVG+P ILLHD EG IVTVE+K+GD+ RG LDE+EDNMN +LK+ I+TD  G TT  + +Y+RG+QIVF++ PDM+K  P FKR++LW+K +G  P         +    GP+GQ  A +R
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVEMKNGDLYRGYLDETEDNMNCLLKDAIRTDVRGITTHCEHVYLRGSQIVFIVFPDMLKHAPFFKRVKLWKKHRGSIPALGLGGGAHIGLGSGPRGQTGAHMR 128
[Close]
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: K3X3X6_GLOUD (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3X6_GLOUD)

HSP 1 Score: 139 bits (351), Expect = 4.570e-39
Identity = 67/130 (51.54%), Postives = 92/130 (70.77%), Query Frame = 3 
Query:  195 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKK-----GPMFKRIQLWRKFKGHPPV-----QSSEGPKGQRAAILRK 554
            M+VTG +GVG+P ILLHD EG IV++E+KSG+  RG LDE+EDNMN +LK+ ++T+  G TT ++Q+Y+RG QI+F+I PD+         PMFKR++LW+K KG  P          GP+GQ AAI+RK
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVSIELKSGETYRGFLDETEDNMNCVLKDAVRTELNGSTTHVEQVYIRGGQILFIIFPDIYPSLLPTHAPMFKRVKLWKKHKGSIPALGQGGPGGGGPRGQAAAIIRK 130
[Close]
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Match: D0NPB0_PHYIT (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Peronosporaceae TaxID=4777 RepID=D0NPB0_PHYIT)

HSP 1 Score: 139 bits (350), Expect = 6.870e-39
Identity = 65/135 (48.15%), Postives = 96/135 (71.11%), Query Frame = 3 
Query:  195 MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILKEVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDM----------IKKGPMFKRIQLWRKFKGHPPVQSSEG-----PKGQRAAILRK 554
            M+VTG +GVG+P ILLHD EG IV++E+K+G+  RG LDE+EDNMN ++K+ ++TD  G T+Q++Q+Y+RG+QI+F++ PD+          +K  PMFKR+++W+K KG  P     G     P+GQ AAI+RK
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTSQVEQVYLRGSQILFIVFPDIYPLQPDIAVTLKHAPMFKRVKMWKKHKGSIPTLGQGGVGGGAPRGQAAAIIRK 135
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVP5_9STRA2.810e-5265.57Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A6H5L429_9PHAE6.970e-5170.00Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A6U1QDM6_9STRA3.690e-4965.83Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
D7FT20_ECTSI2.010e-4868.75Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A7S3K1R1_9STRA6.650e-4356.67Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
I2CSB6_NANGC6.750e-4255.83Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
F0W7K3_9STRA6.750e-4254.40Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Albu... [more]
W4G1B8_9STRA9.160e-4052.34Small nuclear ribonucleoprotein Sm D3 n=5 Tax=Apha... [more]
K3X3X6_GLOUD4.570e-3951.54Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Glob... [more]
D0NPB0_PHYIT6.870e-3948.15Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Pero... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2613975..2616931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue5.2e-39
Seed eggNOG ortholog2880.D7FT20
Preferred nameSMD3
KEGG koko:K07442,ko:K11088,ko:K18738
KEGG Pathwayko03040,ko04139,ko05322,map03040,map04139,map05322
KEGG ModuleM00351,M00352,M00354,M00355,M00398
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005697,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006342,GO:0006351,GO:0006353,GO:0006355,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0017069,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030620,GO:0030702,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032259,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0036211,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046540,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070034,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071208,GO:0071209,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.U7 snRNA binding
EggNOG OGsCOG1958@1,KOG3172@2759
EC2.1.1.219,2.1.1.220
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03032,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein-associated protein D3
Ec32 orthologEc-04_002450.1
Exons3
Model size581
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20679.1prot_S-ischiensis_contig9.20679.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2613975..2616737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817395.674277-CDS-S-ischiensis_contig9:2613974..26142111622817395.674277-CDS-S-ischiensis_contig9:2613974..2614211Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2613975..2614211 -
1695741082.444986-CDS-S-ischiensis_contig9:2613974..26142111695741082.444986-CDS-S-ischiensis_contig9:2613974..2614211Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2613975..2614211 -
1622817395.6861298-CDS-S-ischiensis_contig9:2616426..26165751622817395.6861298-CDS-S-ischiensis_contig9:2616426..2616575Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2616427..2616575 -
1695741082.4595535-CDS-S-ischiensis_contig9:2616426..26165751695741082.4595535-CDS-S-ischiensis_contig9:2616426..2616575Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2616427..2616575 -
1622817395.6972961-CDS-S-ischiensis_contig9:2616736..26167371622817395.6972961-CDS-S-ischiensis_contig9:2616736..2616737Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2616737..2616737 -
1695741082.473672-CDS-S-ischiensis_contig9:2616736..26167371695741082.473672-CDS-S-ischiensis_contig9:2616736..2616737Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2616737..2616737 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817395.7098782-UTR-S-ischiensis_contig9:2616737..26169311622817395.7098782-UTR-S-ischiensis_contig9:2616737..2616931Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2616738..2616931 -
1695741082.4847639-UTR-S-ischiensis_contig9:2616737..26169311695741082.4847639-UTR-S-ischiensis_contig9:2616737..2616931Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2616738..2616931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20679.1

>prot_S-ischiensis_contig9.20679.1 ID=prot_S-ischiensis_contig9.20679.1|Name=mRNA_S-ischiensis_contig9.20679.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=129bp
MSVTGNKGVGMPIILLHDAEGGIVTVEVKSGDVLRGTLDESEDNMNIILK
EVIKTDSEGKTTQLQQLYVRGNQIVFVIVPDMIKKGPMFKRIQLWRKFKG
HPPVQSSEGPKGQRAAILRKGAGAIAAG*
back to top

mRNA from alignment at S-ischiensis_contig9:2613975..2616931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20679.1 ID=mRNA_S-ischiensis_contig9.20679.1|Name=mRNA_S-ischiensis_contig9.20679.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2957bp|location=Sequence derived from alignment at S-ischiensis_contig9:2613975..2616931- (Schizocladia ischiensis KU_0333)
GGCGACCGCTGTGGCAGGGAGGGCGAGGCGCAGCAGCTGCGTGGATCAAG
CCCCTCAACCGCGCTCGCGGAAGGTTGGGGTAGGGGAAGGGAACGCTGCT
CCTAGCGGGTGCTCTCCAGAGCTGGAGCCCTCGTGGCAACTTTTCGGGAA
GGAGGAGCCCCTGAGGAACACGGTGGACCGGGCGCTGCGCAAAGAGTGAG
TTTATTTGCGGCCGTATGTTTGCTCTTGAAGCTTTCTTCCGTGCCAATCA
GGTTTGATGAGTGGTGGGTGTCAGTCGTGGTCGCGGGTTGTTGGTTGCAA
GCCAGGTGACAACGGATCCTTCCCCCGCGTTGTTAACCCAACCCGTGCGG
CCGCAGTGTCTGTGACGGGCAACAAGGGCGTGGGCATGCCCATCATCCTG
CTTCACGATGCTGAAGGGGGGATCGTGACGGTGGAGGTGAAGAGCGGGGA
CGTGCTGAGGGGCACACTGGATGAGTCAGAGGACAACATGAACATCATCC
TCAAGGTGGGGGATCTGGCTGAGATAAAGACAGGCTATATATATACATAT
ATATATATATCTGTACTCATTGGCTTGTCTTGCGACAAAGCCTTGCTTGC
AATTCCGACAGCCCTAAGTCGAAACTTCGGGTTTGCCCTCCGACAGGAGT
AGCTATTTCGCCGTGGACTCTCGCATCCCAATTTGGCCGGGATGGAGCAT
GCCGGGTTTGCACCGGCCAGGCCGTGCACTGGGATAATATATCAGCAGTT
GCATCCTTTTGTGTGGAAAGAAAAGAAGCGGGTGGAAAATAGAGGCGACC
CTATTTTTGCCAGTTCCGGGCCCCAACAGTTGCATCCTTTGTATCAAATC
AACAAGTACCACATCACTATCAAGTTGATTACTTGGCTTTTGGGGTGATA
TTGAAATCCCTGCACAGTTAAGTCATTTTGGCGCATTGGTGATGGGGTGA
ACTGTCGACTGACCTTGTCGGACCTGAGGCTGGGGTGCCCCCCCCGGAAG
TGCATCGTGGGAAGCACAATTGACCGGCAATGGTCGCCTCAGGTGCCGAG
TGTTGCTTCTTTGCTTGGTTTCTATGCCCTGCGGGTGAAAATAAGGGCTT
CTGGTGAGGTCCCCACCCTAGGTTGCTGGGACGGGGCCCAGAACTCGAAC
GCCATCAAAAACAATTTACAAGCATAGCACAACACGGTAGCATATCAATA
TCGCAGGGATTTATGGGCCTTTTGATGCTTCGAAGTACCGTGTGCCGATC
ATCGATTGATTGTCGACATTGAGAGTAACCGAAATCGAATGTATTGATAC
TACTTGTATGTAGTCAGAACACCAATGTTTTTTTACAGACATTATGAAGC
TCGGGGAAAACAAGCACCCATGGAGCAGGCCACGCCGACCGAAACCCCAC
CGCACCCGCTGGCTGCCCCACTACAAGTACCCCGAAGCTACTTATGCGGC
CCCAGAATTGTTGAAGCTACTGTAGCTTCTTCTGTCTCCGGATATTGTCT
ATTTTCGTACTTTGAAGTAGCTAATGCAGGCCGGCGTGACCACGGGTGCA
GGTGTACAGTAGTGCTTGGTGACCAGCACAGCACAGCAGCCCCCACTCCC
TTTCTTGGGCAAAGAGCGGCACGAGAACCTGCTGCAAGCAACACACCAGA
ATGTGTGTGCGTGTGTGTGACATGTCTTGCCCTTGTTCGCTCGATCTCAC
TACTACTTGTAGTAGGTATCACATCACATTGGCACAAAGAGCATAGAAAA
AGAAGTACAGTCGGGGCCACCAGTAAGTTCCGAAAAACATTCAACTTCAA
CGTGCTGACCTTCAACTTGGGATTTGTTATGAAGGCTGAGGCACAAGGTT
TTGACGTGGTACCTTCAGATGAAGCGGCCAATTATTCGGTGAGTTGAACA
AAACGTCAGGAAAGAGCGTACTCAATAATTTCTCTTAAAGGCCAAGGGAA
CTAACTAGTACCACCTACTGTAGAGCGACACATCACATTGGCACAAAGAG
CATAGAAAAAAGTAGAGTGACACACGGAGGGGGACAGTGCGGGGGAATCC
CTCTTGTGCCGTGTGTTGGGACGCATTTCTTGTGCTCGAGCACCGTACTG
CAGCCAAGTACACGAAAGCACAAAGCACACGGCATGCCTGGTTCCTCCAT
CCGACAACTGGAGCTCAGAGATGATAACTTACCCCCGGCGAGTTCCGGGC
CCCATGTTCCCAAAACCGAGACCTCAACAAAAGCCCTTCATTCCCTCGCA
GCCTGCTAACTGCTGCAAGTACTGGACTGCTATATAACTCTAGCAGGTGA
CAGATCAGCCTGCTGTACTACTAGCAACTACTTGGACTTGATGAAAACTC
AGCACACTAGCTACTTTGGATCGAAAACCAGCCAGCAAGCACTGGACTAT
TGCTACTGTAGTAGTAGATGACAGATCAGCCTCCTATACTGACTACTTGG
ACTGGATGAAAACTCAGCCCGCTAACTACTTGGGATTGAAAAATCAGCCA
GCAAGTTCCGCGCCCCGTCCCAAGACTGGGAACTGGCCAGGCGCTTCCGT
TCACTGCCTGTTTGTGTGTTCTTGACTGCCGTCGCCGCTGACGCTTAACC
ACTAGTACGAGAACACTCAATTCTTAAATGGGATAACCACTAATACGAGA
ACACTCATTCTCACACACGCGCGATTGTACCTCGTTGCAATGTGTATGAA
TCGCCGAAACCAACCCGCAGGAGGTTATCAAGACGGATTCGGAGGGGAAG
ACCACGCAGCTGCAACAACTCTACGTCCGGGGCAACCAGATTGTGTTTGT
CATCGTGCCGGACATGATCAAGAAGGGCCCCATGTTCAAGCGCATCCAGC
TGTGGCGGAAGTTCAAGGGTCACCCGCCGGTGCAGTCGTCAGAGGGGCCC
AAGGGCCAGCGGGCGGCCATCTTGCGGAAAGGTGCGGGTGCGATTGCGGC
TGGCTGA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:2613975..2616931-

>mRNA_S-ischiensis_contig9.20679.1 ID=mRNA_S-ischiensis_contig9.20679.1|Name=mRNA_S-ischiensis_contig9.20679.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=774bp|location=Sequence derived from alignment at S-ischiensis_contig9:2613975..2616931- (Schizocladia ischiensis KU_0333)
AATGTCTGTGACGGGCAACAAGGGCGTGGGCATGCCCATCATCCTGCTTC
ACGATGCTGAAGGGGGGATCGTGACGGTGGAGGTGAAGAGCGGGGACGTG
CTGAGGGGCACACTGGATGAGTCAGAGGACAACATGAACATCATCCTCAA
GTGTCTGTGACGGGCAACAAGGGCGTGGGCATGCCCATCATCCTGCTTCA
CGATGCTGAAGGGGGGATCGTGACGGTGGAGGTGAAGAGCGGGGACGTGC
TGAGGGGCACACTGGATGAGTCAGAGGACAACATGAACATCATCCTCAAG
GAGGTTATCAAGACGGATTCGGAGGGGAAGACCACGCAGCTGCAACAACT
CTACGTCCGGGGCAACCAGATTGTGTTTGTCATCGTGCCGGACATGATCA
AGAAGGGCCCCATGTTCAAGCGCATCCAGCTGTGGCGGAAGTTCAAGGGT
CACCCGCCGGTGCAGTCGTCAGAGGGGCCCAAGGGCCAGCGGGCGGCCAT
CTTGCGGAAAGGTGCGGGTGCGATTGCGGCTGGCTGAGAGGTTATCAAGA
CGGATTCGGAGGGGAAGACCACGCAGCTGCAACAACTCTACGTCCGGGGC
AACCAGATTGTGTTTGTCATCGTGCCGGACATGATCAAGAAGGGCCCCAT
GTTCAAGCGCATCCAGCTGTGGCGGAAGTTCAAGGGTCACCCGCCGGTGC
AGTCGTCAGAGGGGCCCAAGGGCCAGCGGGCGGCCATCTTGCGGAAAGGT
GCGGGTGCGATTGCGGCTGGCTGA
back to top